Wall clock time and date at job start Mon Mar 30 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99888 * 2 1 4 4 C 1.52999 * 109.47039 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47171 * 64.99681 * 4 3 2 6 6 C 1.42908 * 114.00006 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.50029 * 329.91929 * 6 5 4 8 8 C 1.53117 * 109.50161 * 89.99689 * 6 5 4 9 9 C 1.53128 * 109.15521 * 177.59549 * 8 6 5 10 10 C 1.53030 * 109.27933 * 302.34620 * 9 8 6 11 11 N 1.46846 * 109.52526 * 59.17960 * 10 9 8 12 12 C 1.46900 * 111.00301 * 174.15878 * 11 10 9 13 13 H 1.08997 * 109.47656 * 186.04624 * 12 11 10 14 14 C 1.53001 * 109.46971 * 306.05095 * 12 11 10 15 15 C 1.50699 * 109.46724 * 66.04645 * 12 11 10 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 12 11 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 12 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.46844 * 111.19928 * 298.26027 * 11 10 9 24 24 H 1.08997 * 109.46703 * 300.00263 * 1 2 3 25 25 H 1.08994 * 109.47340 * 60.00482 * 1 2 3 26 26 H 1.08997 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47751 * 59.99687 * 3 2 1 28 28 H 1.09000 * 109.46610 * 299.99453 * 3 2 1 29 29 H 1.08994 * 109.47303 * 304.99281 * 4 3 2 30 30 H 1.09002 * 109.47074 * 184.99414 * 4 3 2 31 31 H 1.08999 * 109.52244 * 57.69597 * 8 6 5 32 32 H 1.08997 * 109.57612 * 297.52851 * 8 6 5 33 33 H 1.09005 * 109.50009 * 182.40693 * 9 8 6 34 34 H 1.08999 * 109.50050 * 62.29027 * 9 8 6 35 35 H 1.09008 * 109.46338 * 299.16531 * 10 9 8 36 36 H 1.09001 * 109.45554 * 179.19416 * 10 9 8 37 37 H 1.08995 * 109.47372 * 60.00095 * 14 12 11 38 38 H 1.09002 * 109.47140 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47215 * 299.99593 * 14 12 11 40 40 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46565 * 181.75722 * 23 11 10 42 42 H 1.08999 * 109.46221 * 301.72328 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3812 0.4191 -1.3246 7 1 5.8786 1.2112 -0.7648 8 6 5.7841 -0.9425 -0.7515 9 6 7.2943 -1.1315 -0.9200 10 6 7.6561 -1.0137 -2.4022 11 7 7.2510 0.3060 -2.9029 12 6 7.7064 0.5074 -4.2850 13 1 7.4881 1.5295 -4.5943 14 6 9.2143 0.2609 -4.3660 15 6 6.9902 -0.4567 -5.1952 16 1 6.2686 -1.1494 -4.7880 17 6 7.2562 -0.4545 -6.5481 18 7 6.6308 -1.2956 -7.3427 19 14 8.5048 0.7430 -7.2526 20 1 9.8517 0.1176 -7.2410 21 1 8.5256 1.9783 -6.4286 22 1 8.1299 1.0852 -8.6481 23 6 5.7984 0.4919 -2.7951 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8462 -0.8901 29 1 3.8515 0.5684 0.8409 30 1 3.9785 2.1765 0.0888 31 1 5.2564 -1.7329 -1.2852 32 1 5.5277 -0.9835 0.3070 33 1 7.5809 -2.1169 -0.5526 34 1 7.8224 -0.3638 -0.3543 35 1 7.1383 -1.7903 -2.9653 36 1 8.7326 -1.1335 -2.5239 37 1 9.4326 -0.7612 -4.0568 38 1 9.5521 0.4099 -5.3916 39 1 9.7323 0.9582 -3.7076 40 1 6.8182 -1.2943 -8.2944 41 1 5.5256 1.4656 -3.2022 42 1 5.2893 -0.2917 -3.3563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179346151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:22 Heat of formation + Delta-G solvation = -84.608750 kcal Electronic energy + Delta-G solvation = -20260.963508 eV Core-core repulsion = 17241.505580 eV Total energy + Delta-G solvation = -3019.457928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.08302 -37.99939 -36.72009 -33.89102 -31.82460 -30.71723 -29.57160 -28.32774 -26.31878 -25.07586 -23.70188 -22.44365 -22.15318 -20.12533 -19.03987 -16.84236 -16.68296 -16.51872 -15.72030 -15.47168 -15.08252 -14.62790 -14.36383 -14.17376 -13.51714 -13.15268 -12.93192 -12.90129 -12.56881 -12.37907 -12.08263 -11.88243 -11.61361 -11.42307 -11.18187 -10.90328 -10.76802 -10.51049 -10.39354 -10.16184 -9.93237 -9.77300 -9.68776 -9.58879 -9.34198 -9.02521 -8.56004 -7.17158 -6.08166 -4.08858 3.27195 3.38054 3.40396 3.69420 3.77952 4.39904 4.92435 4.98284 5.12539 5.20058 5.22917 5.24705 5.27020 5.33148 5.39523 5.44870 5.52402 5.58670 5.65417 5.77526 5.94515 6.08165 6.23451 6.24689 6.33508 6.44125 6.47931 6.50463 6.67878 6.69766 6.83256 6.89462 7.05114 7.06648 7.21790 7.55467 7.59347 8.10702 8.16782 8.48258 8.94440 9.54795 11.04834 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.005014 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.051336 B = 5582.943918 C = 6140.450088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.374 6.374 6 C 0.094 3.906 7 H 0.060 0.940 8 C -0.137 4.137 9 C -0.113 4.113 10 C 0.052 3.948 11 N -0.526 5.526 12 C 0.176 3.824 13 H 0.040 0.960 14 C -0.146 4.146 15 C -0.544 4.544 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.265 1.265 22 H -0.298 1.298 23 C 0.069 3.931 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 4.840 15.678 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.012 4.012 5 O -0.292 6.292 6 C 0.036 3.964 7 H 0.078 0.922 8 C -0.175 4.175 9 C -0.151 4.151 10 C -0.076 4.076 11 N -0.252 5.252 12 C 0.068 3.932 13 H 0.058 0.942 14 C -0.204 4.204 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.191 1.191 22 H -0.226 1.226 23 C -0.059 4.059 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.239 4.912 15.639 17.210 hybrid contribution 0.174 0.203 -0.876 0.916 sum -5.065 5.115 14.763 16.425 Atomic orbital electron populations 1.22729 0.81395 1.02743 0.99678 1.87991 1.19310 1.27396 1.95316 1.22578 0.92812 0.85387 1.00568 1.22474 0.92903 0.97273 0.88586 1.87977 1.22742 1.81584 1.36896 1.22165 0.79965 0.96121 0.98138 0.92205 1.22030 0.96815 0.98507 1.00141 1.21574 0.94986 1.00865 0.97712 1.22042 1.00714 0.91720 0.93130 1.62284 1.11286 1.28448 1.23137 1.19690 0.91566 0.97222 0.84688 0.94232 1.22216 0.98340 1.00667 0.99160 1.21616 1.24446 1.19905 0.92252 0.90520 1.24986 0.95776 0.95114 0.97060 1.69924 1.42331 1.36746 1.04573 0.86828 0.81346 0.82311 0.77494 1.20649 1.19052 1.22620 1.21768 0.89460 1.02281 0.92404 0.94457 0.94003 0.89692 0.92240 0.92345 0.92862 0.92030 0.91372 0.92760 0.92070 0.91939 0.93800 0.90919 0.92701 0.94091 0.94446 0.92701 0.91258 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.20 10.67 -40.09 -0.43 -5.62 16 3 C 0.06 0.72 6.32 37.16 0.23 0.96 16 4 C 0.06 0.82 6.13 37.16 0.23 1.05 16 5 O -0.37 -6.35 9.96 -40.09 -0.40 -6.75 16 6 C 0.09 1.59 2.77 -26.65 -0.07 1.52 16 7 H 0.06 0.94 7.79 -51.93 -0.40 0.53 16 8 C -0.14 -2.18 5.62 -26.60 -0.15 -2.33 16 9 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 10 C 0.05 1.00 4.76 -3.84 -0.02 0.98 16 11 N -0.53 -10.95 4.69 -228.09 -1.07 -12.03 16 12 C 0.18 4.17 2.05 -68.86 -0.14 4.03 16 13 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 14 C -0.15 -3.19 8.25 37.16 0.31 -2.88 16 15 C -0.54 -15.07 7.77 -34.44 -0.27 -15.34 16 16 H 0.08 2.34 6.09 -52.49 -0.32 2.02 16 17 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.89 21.99 24.37 -169.99 -4.14 17.85 16 20 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 21 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 22 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 23 C 0.07 1.42 4.66 -3.84 -0.02 1.40 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.65 7.94 -51.93 -0.41 0.23 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.96 7.03 -51.92 -0.37 0.59 16 36 H 0.07 1.35 5.87 -51.93 -0.30 1.05 16 37 H 0.05 1.16 6.20 -51.93 -0.32 0.83 16 38 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 42 H 0.05 1.29 6.57 -51.93 -0.34 0.95 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -31.29 318.72 -6.76 -38.05 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.25 Total: -0.43 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.95 Total: -9.12 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.30 Total: -38.78 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.83 Total: -12.37 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.29 -6.76 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179346151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.554 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds