Wall clock time and date at job start Mon Mar 30 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99888 * 2 1 4 4 C 1.52999 * 109.47039 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47171 * 64.99681 * 4 3 2 6 6 C 1.42908 * 114.00006 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.50029 * 329.91929 * 6 5 4 8 8 C 1.53117 * 109.50161 * 89.99689 * 6 5 4 9 9 C 1.53128 * 109.15521 * 177.59549 * 8 6 5 10 10 C 1.53030 * 109.27933 * 302.34620 * 9 8 6 11 11 N 1.46846 * 109.52526 * 59.17960 * 10 9 8 12 12 C 1.46900 * 111.00301 * 174.15878 * 11 10 9 13 13 H 1.08997 * 109.47656 * 186.04624 * 12 11 10 14 14 C 1.53001 * 109.46971 * 306.05095 * 12 11 10 15 15 C 1.50699 * 109.46724 * 66.04645 * 12 11 10 16 16 H 1.07999 * 120.00803 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99889 * 180.02562 * 15 12 11 18 18 N 1.31520 * 120.00186 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00030 * 0.02562 * 17 15 12 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.46844 * 111.19928 * 298.26027 * 11 10 9 24 24 H 1.08997 * 109.46703 * 300.00263 * 1 2 3 25 25 H 1.08994 * 109.47340 * 60.00482 * 1 2 3 26 26 H 1.08997 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47751 * 59.99687 * 3 2 1 28 28 H 1.09000 * 109.46610 * 299.99453 * 3 2 1 29 29 H 1.08994 * 109.47303 * 304.99281 * 4 3 2 30 30 H 1.09002 * 109.47074 * 184.99414 * 4 3 2 31 31 H 1.08999 * 109.52244 * 57.69597 * 8 6 5 32 32 H 1.08997 * 109.57612 * 297.52851 * 8 6 5 33 33 H 1.09005 * 109.50009 * 182.40693 * 9 8 6 34 34 H 1.08999 * 109.50050 * 62.29027 * 9 8 6 35 35 H 1.09008 * 109.46338 * 299.16531 * 10 9 8 36 36 H 1.09001 * 109.45554 * 179.19416 * 10 9 8 37 37 H 1.08995 * 109.47372 * 60.00095 * 14 12 11 38 38 H 1.09002 * 109.47140 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47215 * 299.99593 * 14 12 11 40 40 H 0.96998 * 120.00124 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46565 * 181.75722 * 23 11 10 42 42 H 1.08999 * 109.46221 * 301.72328 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3812 0.4191 -1.3246 7 1 5.8786 1.2112 -0.7648 8 6 5.7841 -0.9425 -0.7515 9 6 7.2943 -1.1315 -0.9200 10 6 7.6561 -1.0137 -2.4022 11 7 7.2510 0.3060 -2.9029 12 6 7.7064 0.5074 -4.2850 13 1 7.4881 1.5295 -4.5943 14 6 9.2143 0.2609 -4.3660 15 6 6.9902 -0.4567 -5.1952 16 1 6.2686 -1.1494 -4.7880 17 6 7.2562 -0.4545 -6.5481 18 7 6.6308 -1.2956 -7.3427 19 14 8.5048 0.7430 -7.2526 20 1 9.8517 0.1176 -7.2410 21 1 8.5256 1.9783 -6.4286 22 1 8.1299 1.0852 -8.6481 23 6 5.7984 0.4919 -2.7951 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8462 -0.8901 29 1 3.8515 0.5684 0.8409 30 1 3.9785 2.1765 0.0888 31 1 5.2564 -1.7329 -1.2852 32 1 5.5277 -0.9835 0.3070 33 1 7.5809 -2.1169 -0.5526 34 1 7.8224 -0.3638 -0.3543 35 1 7.1383 -1.7903 -2.9653 36 1 8.7326 -1.1335 -2.5239 37 1 9.4326 -0.7612 -4.0568 38 1 9.5521 0.4099 -5.3916 39 1 9.7323 0.9582 -3.7076 40 1 6.8182 -1.2943 -8.2944 41 1 5.5256 1.4656 -3.2022 42 1 5.2893 -0.2917 -3.3563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179346151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:22 Heat of formation + Delta-G solvation = -108.419228 kcal Electronic energy + Delta-G solvation = -20261.996008 eV Core-core repulsion = 17241.505580 eV Total energy + Delta-G solvation = -3020.490428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51867 -39.09985 -38.01643 -35.58200 -33.81715 -31.93833 -31.08524 -29.74682 -27.19399 -27.06655 -25.29097 -23.64329 -23.42814 -21.75853 -20.75836 -18.57602 -18.02551 -17.60928 -17.25939 -16.65365 -16.30391 -15.98136 -15.75588 -15.60343 -15.26640 -14.79188 -14.56679 -14.20407 -14.01285 -13.87188 -13.45744 -13.28609 -13.05985 -12.69837 -12.66705 -12.50335 -12.09351 -12.02458 -11.88919 -11.66971 -11.59523 -11.43378 -11.28138 -11.23649 -10.74973 -10.62611 -10.33253 -9.01338 -8.31406 -6.36808 1.30358 1.36507 1.47324 2.31166 2.54898 2.89030 3.04392 3.44359 3.88196 3.93124 4.10717 4.14395 4.23783 4.33702 4.36788 4.47380 4.51082 4.55656 4.58227 4.60887 4.65725 4.70808 4.73477 4.81748 4.85531 4.91594 4.98064 5.04198 5.09331 5.12148 5.15762 5.26723 5.43154 5.44358 5.56553 6.13531 6.21309 6.32799 6.36079 6.51568 6.70687 7.31048 8.85687 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.005014 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.051336 B = 5582.943918 C = 6140.450088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.056 3.944 5 O -0.404 6.404 6 C 0.104 3.896 7 H 0.085 0.915 8 C -0.134 4.134 9 C -0.103 4.103 10 C 0.051 3.949 11 N -0.513 5.513 12 C 0.174 3.826 13 H 0.034 0.966 14 C -0.142 4.142 15 C -0.540 4.540 16 H 0.028 0.972 17 C 0.012 3.988 18 N -0.951 5.951 19 Si 0.956 3.044 20 H -0.263 1.263 21 H -0.244 1.244 22 H -0.302 1.302 23 C 0.072 3.928 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.001 0.999 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.265 0.735 41 H 0.060 0.940 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 6.779 18.224 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.020 4.020 5 O -0.323 6.323 6 C 0.047 3.953 7 H 0.103 0.897 8 C -0.172 4.172 9 C -0.140 4.140 10 C -0.077 4.077 11 N -0.237 5.237 12 C 0.065 3.935 13 H 0.052 0.948 14 C -0.199 4.199 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.186 4.186 18 N -0.591 5.591 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.168 1.168 22 H -0.230 1.230 23 C -0.057 4.057 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.020 0.980 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -3.725 6.858 18.225 19.826 hybrid contribution -0.453 -0.451 -1.616 1.738 sum -4.177 6.407 16.609 18.286 Atomic orbital electron populations 1.22898 0.79725 1.03545 1.00859 1.87934 1.21350 1.28849 1.95592 1.22735 0.92047 0.84918 1.01932 1.22812 0.93877 0.98376 0.86953 1.87953 1.22504 1.82343 1.39532 1.21984 0.80617 0.97526 0.95209 0.89691 1.22010 0.96912 0.96911 1.01343 1.21538 0.94705 1.03065 0.94727 1.22139 1.00742 0.89456 0.95397 1.62355 1.11143 1.29210 1.21000 1.19652 0.92967 0.95414 0.85420 0.94779 1.22115 0.96330 1.01792 0.99635 1.21839 1.23410 1.19435 0.93154 0.95375 1.25914 0.98108 0.97103 0.97441 1.70090 1.44747 1.39281 1.04981 0.85757 0.78995 0.80539 0.76485 1.18873 1.16810 1.22972 1.21731 0.88999 0.99872 0.95086 0.92074 0.93945 0.89232 0.88688 0.93015 0.91952 0.89564 0.94300 0.89797 0.89848 0.89469 0.98010 0.89850 0.92552 0.94685 0.91051 0.92651 0.92133 0.97671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.04 10.67 -144.34 -1.54 -12.58 16 3 C 0.06 1.27 6.32 71.98 0.45 1.72 16 4 C 0.06 1.30 6.13 71.98 0.44 1.74 16 5 O -0.40 -13.61 9.96 -144.34 -1.44 -15.04 16 6 C 0.10 3.43 2.77 30.64 0.08 3.52 16 7 H 0.09 2.39 7.79 -2.38 -0.02 2.37 16 8 C -0.13 -4.09 5.62 30.68 0.17 -3.92 16 9 C -0.10 -2.94 6.09 30.65 0.19 -2.75 16 10 C 0.05 1.93 4.76 86.32 0.41 2.34 16 11 N -0.51 -21.18 4.69 -875.53 -4.11 -25.29 16 12 C 0.17 8.20 2.05 44.17 0.09 8.29 16 13 H 0.03 1.66 7.20 -2.39 -0.02 1.64 16 14 C -0.14 -5.82 8.25 71.98 0.59 -5.23 16 15 C -0.54 -31.24 7.77 25.60 0.20 -31.04 16 16 H 0.03 1.86 6.09 -2.91 -0.02 1.84 16 17 C 0.01 0.70 5.45 84.65 0.46 1.16 16 18 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 19 Si 0.96 45.33 24.37 68.60 1.67 47.00 16 20 H -0.26 -11.73 6.87 99.48 0.68 -11.04 16 21 H -0.24 -10.68 6.53 99.48 0.65 -10.03 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 C 0.07 3.04 4.66 86.33 0.40 3.44 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16 30 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.10 7.94 -2.39 -0.02 2.08 16 33 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.00 0.07 7.03 -2.38 -0.02 0.05 16 36 H 0.08 2.97 5.87 -2.39 -0.01 2.96 16 37 H 0.06 2.27 6.20 -2.39 -0.01 2.26 16 38 H 0.03 1.48 3.27 -2.39 -0.01 1.47 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 42 H 0.00 0.25 6.57 -2.39 -0.02 0.24 16 Total: -1.00 -71.98 318.72 0.53 -71.45 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.90 Total: 14.07 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.75 Total: -19.00 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -3.81 Total: -85.91 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -2.98 Total: -27.62 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -71.98 0.53 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179346151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.964 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds