Wall clock time and date at job start Mon Mar 30 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47419 * 2 1 4 4 C 1.50707 * 109.46835 * 240.00254 * 2 1 3 5 5 H 1.07999 * 119.99977 * 239.99938 * 4 2 1 6 6 C 1.37872 * 120.00251 * 60.00084 * 4 2 1 7 7 N 1.31519 * 119.99695 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47282 * 90.00176 * 8 6 4 10 10 H 1.48507 * 109.46941 * 209.99768 * 8 6 4 11 11 H 1.48495 * 109.47020 * 329.99570 * 8 6 4 12 12 N 1.46900 * 109.47375 * 120.00397 * 2 1 3 13 13 C 1.46897 * 111.00001 * 274.99904 * 12 2 1 14 14 C 1.53004 * 109.47324 * 179.97438 * 13 12 2 15 15 C 1.52990 * 109.47274 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.47400 * 179.97438 * 15 14 13 17 17 C 1.42902 * 114.00520 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47316 * 180.02562 * 17 16 15 19 19 H 1.08997 * 110.67587 * 303.48791 * 18 17 16 20 20 C 1.55000 * 110.61526 * 180.52197 * 18 17 16 21 21 C 1.54818 * 102.09030 * 204.47771 * 20 18 17 22 22 C 1.54097 * 104.18808 * 20.87976 * 21 20 18 23 23 O 1.43745 * 107.29442 * 2.03270 * 22 21 20 24 24 H 1.08999 * 109.47045 * 299.99372 * 1 2 3 25 25 H 1.08996 * 109.47215 * 59.99977 * 1 2 3 26 26 H 1.09007 * 109.46937 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00033 * 179.97438 * 7 6 4 28 28 H 1.00897 * 111.00127 * 151.04460 * 12 2 1 29 29 H 1.09005 * 109.47174 * 59.99711 * 13 12 2 30 30 H 1.09001 * 109.46800 * 299.99770 * 13 12 2 31 31 H 1.09002 * 109.46600 * 59.99685 * 14 13 12 32 32 H 1.08995 * 109.46729 * 300.00313 * 14 13 12 33 33 H 1.09005 * 109.47088 * 59.99978 * 15 14 13 34 34 H 1.09005 * 109.47503 * 300.00463 * 15 14 13 35 35 H 1.09001 * 109.47263 * 59.99650 * 17 16 15 36 36 H 1.09000 * 109.46943 * 300.00169 * 17 16 15 37 37 H 1.08996 * 110.90766 * 86.28222 * 20 18 17 38 38 H 1.09000 * 110.90626 * 322.67179 * 20 18 17 39 39 H 1.09004 * 110.48564 * 262.20686 * 21 20 18 40 40 H 1.08989 * 110.60109 * 139.61789 * 21 20 18 41 41 H 1.08998 * 109.88273 * 242.60534 * 22 21 20 42 42 H 1.08998 * 110.00322 * 121.52715 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5952 -0.5334 3.5744 15 6 2.6612 0.4197 4.7693 16 8 3.1394 -0.2863 5.9160 17 6 3.2387 0.5170 7.0937 18 6 3.7586 -0.3374 8.2515 19 1 3.1165 -1.2040 8.4088 20 6 3.8642 0.5061 9.5476 21 6 4.9401 -0.2657 10.3500 22 6 5.6936 -1.0827 9.2826 23 8 5.1201 -0.7509 8.0069 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7086 1.1614 -3.4844 28 1 2.9173 -1.1206 1.0286 29 1 1.0871 0.6162 2.5525 30 1 2.7590 1.0460 2.1182 31 1 3.5905 -0.9274 3.3689 32 1 1.9185 -1.3567 3.8028 33 1 1.6661 0.8142 4.9749 34 1 3.3381 1.2429 4.5406 35 1 2.2555 0.9135 7.3470 36 1 3.9278 1.3422 6.9136 37 1 2.9145 0.5182 10.0823 38 1 4.1973 1.5200 9.3258 39 1 4.4711 -0.9287 11.0771 40 1 5.6174 0.4275 10.8484 41 1 5.5725 -2.1482 9.4775 42 1 6.7519 -0.8223 9.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309310984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:01 Heat of formation + Delta-G solvation = -128.919164 kcal Electronic energy + Delta-G solvation = -18743.000443 eV Core-core repulsion = 15721.621071 eV Total energy + Delta-G solvation = -3021.379372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47531 -38.91079 -37.82537 -35.11976 -33.26496 -32.96756 -31.43950 -29.60127 -27.36943 -26.45567 -25.02861 -22.74101 -22.42759 -21.94184 -21.72044 -18.54280 -17.99781 -17.41686 -17.07929 -16.90085 -16.74488 -16.30825 -15.79529 -15.48987 -14.96122 -14.82259 -14.42351 -14.21894 -13.67236 -13.36497 -13.25760 -12.90469 -12.72813 -12.65296 -12.64449 -12.35217 -12.24836 -12.19948 -12.13787 -11.99895 -11.79915 -11.65195 -11.54929 -10.89503 -10.63855 -10.58264 -10.57805 -9.08520 -8.14203 -6.28538 1.42397 1.43398 1.53789 2.40522 2.54057 2.91047 3.14152 3.59651 3.66906 3.91667 3.99519 4.01863 4.13006 4.19948 4.29121 4.37580 4.41964 4.51358 4.52974 4.56817 4.64530 4.73071 4.82506 4.84658 4.90674 4.93031 5.06346 5.07484 5.18916 5.20068 5.21094 5.23776 5.48431 5.66633 5.85272 5.96754 6.21401 6.25427 6.45805 6.76297 6.98132 7.41821 8.91644 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.053213 B = 0.002614 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.056751 B =10709.377007 C =11062.553113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.213 3.787 3 H -0.029 1.029 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.690 5.690 13 C 0.068 3.932 14 C -0.102 4.102 15 C 0.070 3.930 16 O -0.406 6.406 17 C 0.062 3.938 18 C 0.071 3.929 19 H 0.074 0.926 20 C -0.142 4.142 21 C -0.150 4.150 22 C 0.033 3.967 23 O -0.402 6.402 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.263 0.737 28 H 0.333 0.667 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 0.774 25.966 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.012 1.012 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.321 5.321 13 C -0.062 4.062 14 C -0.140 4.140 15 C -0.007 4.007 16 O -0.326 6.326 17 C -0.014 4.014 18 C 0.014 3.986 19 H 0.092 0.908 20 C -0.179 4.179 21 C -0.187 4.187 22 C -0.043 4.043 23 O -0.322 6.322 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.127 0.444 25.796 26.305 hybrid contribution 0.831 0.472 -1.150 1.495 sum 5.958 0.916 24.646 25.373 Atomic orbital electron populations 1.21551 0.97599 0.98914 0.99169 1.18949 0.92893 0.90821 0.86858 1.01189 1.21600 1.31795 1.12738 0.91670 0.92303 1.25765 0.95178 0.95709 1.02123 1.70026 1.37432 1.24021 1.24237 0.85450 0.78840 0.78185 0.78492 1.20045 1.20760 1.19255 1.60624 1.32361 1.33540 1.05581 1.21790 0.99838 0.93791 0.90795 1.21316 1.01725 0.98684 0.92296 1.22405 0.98755 0.94421 0.85094 1.87891 1.87340 1.38308 1.19022 1.22731 1.00910 0.93383 0.84415 1.23323 0.84191 0.97004 0.94129 0.90847 1.23120 1.01163 0.99636 0.94025 1.22937 0.98016 0.99666 0.98107 1.23368 0.98881 0.99320 0.82776 1.88965 1.26073 1.87457 1.29734 0.95749 0.92332 0.95356 0.92769 0.85003 0.91673 0.96484 0.92077 0.91116 0.91832 0.92929 0.89652 0.92524 0.87824 0.89790 0.89151 0.88959 0.92166 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.19 71.98 0.66 -5.19 16 2 C 0.21 11.26 2.60 44.17 0.11 11.37 16 3 H -0.03 -1.70 7.80 -2.39 -0.02 -1.72 16 4 C -0.54 -30.49 8.59 25.60 0.22 -30.27 16 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 8 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.69 -30.71 6.30 -495.43 -3.12 -33.83 16 13 C 0.07 2.48 5.48 86.30 0.47 2.95 16 14 C -0.10 -3.17 5.84 30.59 0.18 -2.99 16 15 C 0.07 1.83 5.94 71.98 0.43 2.26 16 16 O -0.41 -11.29 10.34 -148.08 -1.53 -12.83 16 17 C 0.06 1.25 5.68 71.98 0.41 1.66 16 18 C 0.07 1.33 3.63 31.28 0.11 1.44 16 19 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 20 C -0.14 -1.58 6.59 31.90 0.21 -1.37 16 21 C -0.15 -1.48 7.01 31.59 0.22 -1.25 16 22 C 0.03 0.51 7.70 72.35 0.56 1.07 16 23 O -0.40 -9.72 11.22 -148.08 -1.66 -11.38 16 24 H 0.02 1.10 7.45 -2.39 -0.02 1.08 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 26 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 28 H 0.33 14.52 8.22 -89.70 -0.74 13.78 16 29 H 0.06 2.36 7.44 -2.38 -0.02 2.35 16 30 H 0.02 0.63 8.06 -2.39 -0.02 0.62 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.09 338.47 0.22 -65.86 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.23 Total: 18.62 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.04 Total: -19.23 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.88 Total: -87.24 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -3.19 Total: -24.21 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.09 0.22 -65.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309310984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.054 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds