Wall clock time and date at job start Mon Mar 30 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.50700 * 109.47140 * 239.99343 * 2 1 3 5 5 H 1.07996 * 120.00377 * 240.00323 * 4 2 1 6 6 C 1.37881 * 119.99495 * 60.00948 * 4 2 1 7 7 N 1.31510 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47215 * 59.99523 * 8 6 4 10 10 H 1.48499 * 109.47367 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47012 * 299.99696 * 8 6 4 12 12 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 13 13 C 1.46901 * 110.99793 * 274.99642 * 12 2 1 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 O 1.42895 * 109.47503 * 180.02562 * 15 14 13 17 17 C 1.42902 * 114.00370 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47068 * 179.97438 * 17 16 15 19 19 H 1.08995 * 110.81057 * 305.70160 * 18 17 16 20 20 C 1.54815 * 110.90427 * 182.07286 * 18 17 16 21 21 C 1.54101 * 104.18808 * 220.92290 * 20 18 17 22 22 O 1.43747 * 107.29267 * 357.97344 * 21 20 18 23 23 C 1.44422 * 107.00140 * 26.48706 * 22 21 20 24 24 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 25 25 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 26 26 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00514 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99995 * 38.95244 * 12 2 1 29 29 H 1.09001 * 109.46874 * 60.00179 * 13 12 2 30 30 H 1.08992 * 109.47407 * 300.00197 * 13 12 2 31 31 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 32 32 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 33 33 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 34 34 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 35 35 H 1.08999 * 109.46857 * 300.00103 * 17 16 15 36 36 H 1.09001 * 109.46918 * 59.99989 * 17 16 15 37 37 H 1.08998 * 110.49171 * 339.59956 * 20 18 17 38 38 H 1.08999 * 110.48671 * 102.11942 * 20 18 17 39 39 H 1.09005 * 109.88094 * 117.39375 * 21 20 18 40 40 H 1.08994 * 109.88321 * 238.54969 * 21 20 18 41 41 H 1.08999 * 110.64928 * 201.48227 * 23 22 21 42 42 H 1.08995 * 110.60158 * 78.47195 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5332 3.5745 15 6 2.6597 0.4197 4.7698 16 8 3.1389 -0.2860 5.9162 17 6 3.2383 0.5175 7.0938 18 6 3.7580 -0.3369 8.2517 19 1 3.1398 -1.2245 8.3859 20 6 3.8295 0.4893 9.5590 21 6 5.1546 0.0498 10.2115 22 8 5.7315 -0.9613 9.3682 23 6 5.2422 -0.7247 8.0301 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7084 1.1609 -3.4844 28 1 1.4494 -1.4979 1.4101 29 1 1.0870 0.6164 2.5525 30 1 2.7588 1.0461 2.1183 31 1 1.9181 -1.3566 3.8030 32 1 3.5902 -0.9273 3.3692 33 1 3.3363 1.2433 4.5415 34 1 1.6643 0.8135 4.9750 35 1 3.9267 1.3430 6.9133 36 1 2.2549 0.9133 7.3476 37 1 3.8496 1.5559 9.3357 38 1 2.9858 0.2518 10.2070 39 1 5.8315 0.9010 10.2857 40 1 4.9616 -0.3602 11.2028 41 1 5.3165 -1.6303 7.4280 42 1 5.7873 0.0947 7.5617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309360568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:12 Heat of formation + Delta-G solvation = -108.639521 kcal Electronic energy + Delta-G solvation = -18742.633582 eV Core-core repulsion = 15722.133601 eV Total energy + Delta-G solvation = -3020.499981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82084 -38.00735 -36.25797 -33.69076 -32.84439 -31.20965 -29.75523 -27.86937 -25.76375 -25.13173 -23.76328 -22.76193 -21.29203 -20.64863 -20.14566 -17.28769 -16.47394 -16.27820 -16.17558 -16.00578 -15.35195 -14.81019 -14.68962 -14.08735 -14.02023 -13.52057 -13.28256 -12.87514 -12.50248 -12.03511 -11.92795 -11.82580 -11.68761 -11.39110 -11.17802 -11.12532 -10.94042 -10.87177 -10.75616 -10.63221 -10.32290 -10.12001 -9.99485 -9.82036 -9.67878 -9.00111 -8.34672 -7.22772 -5.97073 -4.00320 3.33360 3.36043 3.39521 3.43453 3.72611 4.19374 4.39806 4.45694 4.57502 4.75567 4.89926 4.98320 5.11775 5.13933 5.24521 5.25614 5.34324 5.34728 5.42303 5.45581 5.52085 5.59387 5.66489 5.73556 5.83349 5.96333 6.10035 6.48512 6.53135 6.54147 6.69565 6.84814 7.09834 7.11280 7.37966 7.74626 7.89904 8.28703 8.55146 8.63396 9.06777 9.64944 11.10015 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.052333 B = 0.002600 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.908272 B =10765.980876 C =11113.218123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.072 3.928 18 C -0.121 4.121 19 H 0.095 0.905 20 C -0.151 4.151 21 C 0.047 3.953 22 O -0.381 6.381 23 C 0.055 3.945 24 H 0.004 0.996 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 1.405 22.963 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.314 5.314 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.011 4.011 16 O -0.307 6.307 17 C -0.005 4.005 18 C -0.139 4.139 19 H 0.113 0.887 20 C -0.188 4.188 21 C -0.030 4.030 22 O -0.300 6.300 23 C -0.021 4.021 24 H 0.023 0.977 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.593 1.258 22.704 23.198 hybrid contribution -1.038 0.287 -0.708 1.289 sum 3.555 1.545 21.996 22.335 Atomic orbital electron populations 1.22434 1.00736 0.99218 1.00455 1.19176 0.89592 0.94404 0.86519 0.94931 1.21136 1.30209 1.12441 0.89617 0.91959 1.24963 0.95360 0.95232 0.99076 1.69872 1.37330 1.23246 1.23434 0.86549 0.79191 0.79595 0.81961 1.20356 1.21486 1.20273 1.60779 1.58158 1.09080 1.03393 1.21764 0.98257 0.96066 0.90563 1.21510 1.03260 0.98223 0.92226 1.22528 0.97737 0.95277 0.85604 1.87872 1.87106 1.37494 1.18193 1.22385 0.99739 0.93166 0.85186 1.22714 0.98175 0.99658 0.93394 0.88708 1.22938 0.98823 1.00760 0.96313 1.23135 0.93107 0.91716 0.95026 1.88891 1.70368 1.51754 1.18988 1.23621 0.91665 1.02254 0.84548 0.97679 0.89242 0.95311 0.93031 0.85808 0.96421 0.91720 0.91680 0.90439 0.93247 0.93549 0.93121 0.93046 0.90381 0.90074 0.92349 0.89848 0.88199 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.36 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.87 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.68 -14.70 6.23 -107.95 -0.67 -15.37 16 13 C 0.06 1.13 5.48 -3.82 -0.02 1.10 16 14 C -0.11 -1.67 5.84 -26.73 -0.16 -1.83 16 15 C 0.07 0.81 5.94 37.16 0.22 1.03 16 16 O -0.39 -4.78 10.25 -35.23 -0.36 -5.14 16 17 C 0.07 0.67 5.27 37.16 0.20 0.86 16 18 C -0.12 -1.03 3.39 -88.61 -0.30 -1.34 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -0.98 6.60 -25.20 -0.17 -1.15 16 21 C 0.05 0.35 7.70 37.73 0.29 0.64 16 22 O -0.38 -4.08 11.52 -35.23 -0.41 -4.49 16 23 C 0.06 0.53 7.09 38.21 0.27 0.80 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.33 6.63 8.47 -39.29 -0.33 6.30 16 29 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 30 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.43 7.86 -51.93 -0.41 0.02 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.57 7.98 -51.93 -0.41 0.15 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -29.87 337.99 -8.33 -38.20 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.68 Total: 1.55 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.05 Total: -40.64 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.77 Total: -9.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.87 -8.33 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309360568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.441 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds