Wall clock time and date at job start Mon Mar 30 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47164 * 2 1 4 4 C 1.50706 * 109.47116 * 119.99573 * 2 1 3 5 5 H 1.07998 * 120.00037 * 119.99968 * 4 2 1 6 6 C 1.37876 * 120.00296 * 300.00296 * 4 2 1 7 7 N 1.31506 * 120.00216 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99662 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 89.99844 * 8 6 4 10 10 H 1.48503 * 109.46818 * 210.00423 * 8 6 4 11 11 H 1.48504 * 109.46913 * 329.99652 * 8 6 4 12 12 N 1.46902 * 109.47401 * 239.99670 * 2 1 3 13 13 C 1.46904 * 110.99894 * 84.99634 * 12 2 1 14 14 C 1.52995 * 109.46879 * 180.02562 * 13 12 2 15 15 C 1.52998 * 109.46968 * 180.02562 * 14 13 12 16 16 O 1.42904 * 109.47178 * 180.02562 * 15 14 13 17 17 C 1.42898 * 114.00232 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 15 19 19 H 1.08991 * 110.75153 * 51.52312 * 18 17 16 20 20 C 1.55304 * 110.84611 * 174.99935 * 18 17 16 21 21 C 1.54944 * 100.97800 * 152.50267 * 20 18 17 22 22 O 1.43693 * 105.11450 * 323.61333 * 21 20 18 23 23 C 1.43240 * 109.99409 * 24.36003 * 22 21 20 24 24 H 1.08999 * 109.47128 * 300.00372 * 1 2 3 25 25 H 1.09001 * 109.47089 * 60.00328 * 1 2 3 26 26 H 1.09004 * 109.46935 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00028 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00229 * 208.95535 * 12 2 1 29 29 H 1.08995 * 109.46377 * 60.00352 * 13 12 2 30 30 H 1.08993 * 109.46989 * 300.00521 * 13 12 2 31 31 H 1.09003 * 109.47058 * 60.00361 * 14 13 12 32 32 H 1.09003 * 109.47198 * 300.00612 * 14 13 12 33 33 H 1.09003 * 109.47135 * 60.00164 * 15 14 13 34 34 H 1.08998 * 109.47195 * 299.99802 * 15 14 13 35 35 H 1.08999 * 109.47464 * 59.99489 * 17 16 15 36 36 H 1.09006 * 109.46705 * 300.00495 * 17 16 15 37 37 H 1.09002 * 111.12488 * 270.44243 * 20 18 17 38 38 H 1.08995 * 111.12730 * 34.56238 * 20 18 17 39 39 H 1.08996 * 110.31114 * 82.48962 * 21 20 18 40 40 H 1.09004 * 110.31323 * 204.65778 * 21 20 18 41 41 H 1.09001 * 109.83319 * 238.81565 * 23 22 21 42 42 H 1.08998 * 109.90329 * 117.88243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9772 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0198 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5951 -0.5334 -3.5744 15 6 2.6611 0.4198 -4.7694 16 8 3.1393 -0.2863 -5.9161 17 6 3.2396 0.5173 -7.0935 18 6 3.7581 -0.3374 -8.2517 19 1 3.1680 -1.2480 -8.3541 20 6 3.7609 0.4715 -9.5774 21 6 4.9045 -0.2326 -10.3503 22 8 5.8819 -0.5664 -9.3512 23 6 5.2544 -0.6702 -8.0677 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9025 -0.5282 4.4376 28 1 2.9174 -1.1206 -1.0287 29 1 2.7588 1.0460 -2.1182 30 1 1.0871 0.6161 -2.5525 31 1 1.9184 -1.3568 -3.8029 32 1 3.5904 -0.9274 -3.3690 33 1 3.3380 1.2429 -4.5407 34 1 1.6659 0.8141 -4.9750 35 1 3.9290 1.3420 -6.9129 36 1 2.2566 0.9144 -7.3470 37 1 2.8110 0.3690 -10.1021 38 1 3.9962 1.5203 -9.3972 39 1 4.5341 -1.1366 -10.8334 40 1 5.3339 0.4436 -11.0896 41 1 5.7086 0.0390 -7.3756 42 1 5.3631 -1.6840 -7.6824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309360570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:14 Heat of formation + Delta-G solvation = -101.327694 kcal Electronic energy + Delta-G solvation = -18798.041552 eV Core-core repulsion = 15777.858636 eV Total energy + Delta-G solvation = -3020.182916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87154 -38.07324 -36.42077 -33.75534 -32.86515 -31.48093 -29.92434 -28.65213 -25.92650 -25.18160 -23.85832 -22.67919 -21.40416 -20.75782 -19.87308 -17.40069 -16.85826 -16.43789 -16.33861 -16.13921 -15.39244 -15.12751 -14.54141 -14.43390 -13.74807 -13.60657 -13.24800 -13.11965 -12.87886 -12.45776 -12.17356 -12.02663 -11.89373 -11.61461 -11.52536 -11.21433 -11.05678 -11.00218 -10.77565 -10.65457 -10.46041 -10.09990 -9.85432 -9.72982 -9.49645 -9.03659 -8.62360 -7.52480 -6.11096 -4.11073 3.25612 3.29990 3.34472 3.37292 3.57103 4.05180 4.37038 4.43877 4.49123 4.79921 4.80819 4.92038 5.01966 5.06884 5.16338 5.17086 5.22940 5.30873 5.34526 5.42377 5.46567 5.47652 5.61273 5.65073 5.78536 5.83176 5.98314 6.31247 6.39235 6.43465 6.54126 6.64742 6.70875 6.79831 7.04891 7.37502 7.56291 7.92194 8.33088 8.60278 8.93649 9.50947 11.01889 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.056951 B = 0.002683 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.531896 B =10434.959086 C =10683.648886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.521 4.521 5 H 0.079 0.921 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.679 5.679 13 C 0.061 3.939 14 C -0.115 4.115 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.073 3.927 18 C -0.121 4.121 19 H 0.095 0.905 20 C -0.151 4.151 21 C 0.052 3.948 22 O -0.388 6.388 23 C 0.059 3.941 24 H 0.037 0.963 25 H 0.025 0.975 26 H 0.058 0.942 27 H 0.265 0.735 28 H 0.340 0.660 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 4.753 -25.733 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 H 0.018 0.982 4 C -0.559 4.559 5 H 0.097 0.903 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.311 5.311 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.011 4.011 16 O -0.306 6.306 17 C -0.004 4.004 18 C -0.140 4.140 19 H 0.113 0.887 20 C -0.188 4.188 21 C -0.025 4.025 22 O -0.307 6.307 23 C -0.018 4.018 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.561 4.275 -25.717 26.116 hybrid contribution -0.265 1.673 0.564 1.785 sum 1.296 5.948 -25.153 25.879 Atomic orbital electron populations 1.22073 0.98718 1.01060 0.97664 1.19531 0.91777 0.92944 0.88482 0.98220 1.21112 1.32359 1.13794 0.88602 0.90304 1.24942 0.95713 0.96754 0.95755 1.69889 1.45520 1.40258 0.97929 0.86789 0.80692 0.83542 0.76727 1.20473 1.22522 1.19431 1.60482 1.33064 1.32479 1.05032 1.21822 0.99695 0.94222 0.91191 1.21489 1.02675 0.98756 0.92330 1.22518 0.97824 0.95134 0.85672 1.87880 1.87145 1.37423 1.18200 1.22383 0.99813 0.93137 0.85092 1.22722 0.97372 1.00020 0.93879 0.88671 1.23275 1.00101 1.00350 0.95123 1.23356 0.88755 0.98734 0.91619 1.88417 1.33560 1.91786 1.16964 1.23183 0.91052 1.02120 0.85413 0.94496 0.95616 0.92290 0.92556 0.84142 0.96064 0.91792 0.90413 0.91319 0.93440 0.93331 0.93031 0.92928 0.89523 0.90069 0.92042 0.89646 0.90980 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.90 37.16 0.33 -2.77 16 2 C 0.18 4.34 2.19 -68.86 -0.15 4.19 16 3 H 0.00 0.01 6.86 -51.93 -0.36 -0.35 16 4 C -0.52 -14.66 9.17 -34.44 -0.32 -14.97 16 5 H 0.08 2.39 7.86 -52.49 -0.41 1.97 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 8 Si 0.89 22.12 24.37 -169.99 -4.14 17.97 16 9 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.68 -13.92 6.30 -107.95 -0.68 -14.60 16 13 C 0.06 1.00 5.48 -3.82 -0.02 0.98 16 14 C -0.11 -1.59 5.84 -26.73 -0.16 -1.75 16 15 C 0.07 0.77 5.94 37.16 0.22 0.99 16 16 O -0.39 -4.61 10.30 -35.23 -0.36 -4.97 16 17 C 0.07 0.65 5.29 37.16 0.20 0.84 16 18 C -0.12 -0.98 3.25 -88.67 -0.29 -1.27 16 19 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.15 -0.92 6.61 -24.48 -0.16 -1.08 16 21 C 0.05 0.37 7.78 38.18 0.30 0.66 16 22 O -0.39 -4.06 11.36 -35.23 -0.40 -4.46 16 23 C 0.06 0.56 7.36 37.88 0.28 0.84 16 24 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 25 H 0.02 0.50 7.45 -51.93 -0.39 0.11 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.34 6.96 8.22 -39.29 -0.32 6.64 16 29 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 30 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.43 7.94 -51.93 -0.41 0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -31.04 330.76 -7.21 -38.25 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.51 Total: 0.90 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 0.13 Total: -11.39 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.09 Total: -41.29 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.76 Total: -9.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.04 -7.21 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309360570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.078 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds