Wall clock time and date at job start Mon Mar 30 2020 05:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 C 1.52999 * 109.47276 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47209 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.46702 * 179.97438 * 15 14 13 17 17 C 1.42907 * 113.99299 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.46714 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.80382 * 305.70513 * 18 17 16 20 20 C 1.54804 * 110.90708 * 182.07330 * 18 17 16 21 21 C 1.54099 * 104.18966 * 220.92502 * 20 18 17 22 22 O 1.43747 * 107.29474 * 357.97043 * 21 20 18 23 23 C 1.44422 * 106.99815 * 26.48905 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 28 28 H 1.00892 * 111.00435 * 321.04633 * 12 2 1 29 29 H 1.09003 * 109.46525 * 299.99167 * 13 12 2 30 30 H 1.08991 * 109.47692 * 59.99249 * 13 12 2 31 31 H 1.09003 * 109.46846 * 299.99603 * 14 13 12 32 32 H 1.09006 * 109.47089 * 59.99482 * 14 13 12 33 33 H 1.08989 * 109.47450 * 299.99983 * 15 14 13 34 34 H 1.08997 * 109.46772 * 60.00228 * 15 14 13 35 35 H 1.08996 * 109.47386 * 299.99794 * 17 16 15 36 36 H 1.08998 * 109.46806 * 60.00548 * 17 16 15 37 37 H 1.08999 * 110.48723 * 339.60198 * 20 18 17 38 38 H 1.09001 * 110.48721 * 102.11557 * 20 18 17 39 39 H 1.08997 * 109.87886 * 117.39486 * 21 20 18 40 40 H 1.08999 * 109.87849 * 238.55091 * 21 20 18 41 41 H 1.08996 * 110.65144 * 201.48826 * 23 22 21 42 42 H 1.08994 * 110.60324 * 78.46982 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5333 -3.5745 15 6 2.6599 0.4197 -4.7697 16 8 3.1391 -0.2862 -5.9161 17 6 3.2385 0.5174 -7.0937 18 6 3.7595 -0.3368 -8.2514 19 1 4.6960 -0.8248 -7.9815 20 6 3.9294 0.5145 -9.5331 21 6 3.4148 -0.3977 -10.6635 22 8 3.0458 -1.6519 -10.0659 23 6 2.6993 -1.3786 -8.6907 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9040 -0.5274 4.4375 28 1 1.4495 -1.4979 -1.4100 29 1 1.0871 0.6162 -2.5525 30 1 2.7588 1.0461 -2.1183 31 1 3.5903 -0.9274 -3.3691 32 1 1.9181 -1.3566 -3.8030 33 1 1.6646 0.8135 -4.9749 34 1 3.3365 1.2432 -4.5414 35 1 2.2553 0.9132 -7.3476 36 1 3.9271 1.3428 -6.9132 37 1 3.3280 1.4215 -9.4712 38 1 4.9790 0.7638 -9.6892 39 1 2.5455 0.0561 -11.1393 40 1 4.2027 -0.5557 -11.3999 41 1 2.7772 -2.2832 -8.0876 42 1 1.6964 -0.9570 -8.6245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309360572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:17 Heat of formation + Delta-G solvation = -99.468628 kcal Electronic energy + Delta-G solvation = -18807.602707 eV Core-core repulsion = 15787.500405 eV Total energy + Delta-G solvation = -3020.102301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85849 -38.07580 -36.53209 -33.75463 -32.84352 -31.50464 -29.86504 -28.54439 -25.86621 -25.11244 -23.91675 -22.80262 -21.38575 -20.72573 -20.16648 -17.33102 -16.75895 -16.39661 -16.28835 -16.06734 -15.41109 -14.97409 -14.77039 -14.48388 -13.88345 -13.62049 -13.46378 -12.92867 -12.63037 -12.48198 -12.13688 -11.97265 -11.87186 -11.81353 -11.53148 -11.24511 -11.07065 -11.01129 -10.89456 -10.60241 -10.38330 -10.12335 -10.03177 -9.74043 -9.50047 -9.15384 -8.56385 -7.43554 -6.03775 -4.01079 3.25149 3.28066 3.34602 3.37925 3.68416 4.15901 4.36462 4.40509 4.53139 4.70467 4.86085 4.92438 5.00928 5.08065 5.14432 5.21223 5.26181 5.31108 5.32043 5.41784 5.45246 5.49296 5.59908 5.64244 5.76158 5.81428 5.95884 6.19389 6.23799 6.37353 6.43210 6.50549 6.50942 6.74927 7.04429 7.11457 7.71331 7.91352 8.32484 8.70485 9.07962 9.58740 11.09855 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.060008 B = 0.002663 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.496322 B =10513.146712 C =10612.548496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.498 4.498 5 H 0.082 0.918 6 C 0.066 3.934 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.672 5.672 13 C 0.061 3.939 14 C -0.115 4.115 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.072 3.928 18 C -0.121 4.121 19 H 0.096 0.904 20 C -0.150 4.150 21 C 0.047 3.953 22 O -0.381 6.381 23 C 0.056 3.944 24 H 0.045 0.955 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 4.983 -26.002 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.073 3.927 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.302 5.302 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.011 4.011 16 O -0.306 6.306 17 C -0.005 4.005 18 C -0.140 4.140 19 H 0.114 0.886 20 C -0.188 4.188 21 C -0.030 4.030 22 O -0.300 6.300 23 C -0.021 4.021 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.364 4.673 -25.733 26.190 hybrid contribution -1.727 1.559 0.172 2.333 sum -0.364 6.232 -25.561 26.312 Atomic orbital electron populations 1.22859 1.01532 1.00930 0.98825 1.19648 0.88540 0.95090 0.89385 0.94907 1.20998 1.31153 1.13767 0.87741 0.90001 1.24955 0.96037 0.96645 0.95894 1.69886 1.45922 1.40362 0.97820 0.86879 0.80559 0.83946 0.76827 1.20802 1.22425 1.19552 1.60572 1.58054 1.08825 1.02715 1.21826 0.98334 0.96133 0.90647 1.21493 1.03511 0.98230 0.92044 1.22512 0.97715 0.95255 0.85662 1.87881 1.87115 1.37428 1.18165 1.22389 0.99580 0.93300 0.85188 1.22720 1.00861 0.96740 0.93647 0.88604 1.22936 1.02887 0.99095 0.93910 1.23136 0.99449 0.84639 0.95762 1.88894 1.87659 1.28917 1.24499 1.23616 0.96847 0.99515 0.82099 0.93645 0.95556 0.92668 0.92699 0.85112 0.96367 0.91507 0.90195 0.91499 0.93584 0.93225 0.93214 0.92941 0.90413 0.90015 0.92368 0.89806 0.88210 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 8.64 37.16 0.32 -3.61 16 2 C 0.18 4.31 2.17 -68.86 -0.15 4.16 16 3 H 0.03 0.81 6.86 -51.93 -0.36 0.45 16 4 C -0.50 -14.17 9.42 -34.44 -0.32 -14.49 16 5 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 6 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 7 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 12 N -0.67 -13.64 6.23 -107.95 -0.67 -14.31 16 13 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 14 C -0.11 -1.58 5.84 -26.73 -0.16 -1.73 16 15 C 0.07 0.76 5.94 37.16 0.22 0.98 16 16 O -0.39 -4.55 10.25 -35.23 -0.36 -4.91 16 17 C 0.07 0.63 5.27 37.16 0.20 0.83 16 18 C -0.12 -0.99 3.39 -88.61 -0.30 -1.29 16 19 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.15 -0.93 6.60 -25.21 -0.17 -1.10 16 21 C 0.05 0.33 7.70 37.73 0.29 0.63 16 22 O -0.38 -3.95 11.52 -35.23 -0.41 -4.36 16 23 C 0.06 0.51 7.09 38.22 0.27 0.78 16 24 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 25 H 0.03 0.48 7.45 -51.93 -0.39 0.10 16 26 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.33 6.32 8.47 -39.30 -0.33 5.99 16 29 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 30 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.49 8.14 -51.94 -0.42 0.06 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.39 8.05 -51.93 -0.42 -0.03 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -31.41 331.17 -7.28 -38.68 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.54 Total: 1.15 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.10 Total: -41.34 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.77 Total: -9.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.41 -7.28 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309360572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.784 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds