Wall clock time and date at job start Mon Mar 30 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 C 1.52999 * 109.47276 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47209 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.46702 * 179.97438 * 15 14 13 17 17 C 1.42907 * 113.99299 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.46714 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.80382 * 305.70513 * 18 17 16 20 20 C 1.54804 * 110.90708 * 182.07330 * 18 17 16 21 21 C 1.54099 * 104.18966 * 220.92502 * 20 18 17 22 22 O 1.43747 * 107.29474 * 357.97043 * 21 20 18 23 23 C 1.44422 * 106.99815 * 26.48905 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 28 28 H 1.00892 * 111.00435 * 321.04633 * 12 2 1 29 29 H 1.09003 * 109.46525 * 299.99167 * 13 12 2 30 30 H 1.08991 * 109.47692 * 59.99249 * 13 12 2 31 31 H 1.09003 * 109.46846 * 299.99603 * 14 13 12 32 32 H 1.09006 * 109.47089 * 59.99482 * 14 13 12 33 33 H 1.08989 * 109.47450 * 299.99983 * 15 14 13 34 34 H 1.08997 * 109.46772 * 60.00228 * 15 14 13 35 35 H 1.08996 * 109.47386 * 299.99794 * 17 16 15 36 36 H 1.08998 * 109.46806 * 60.00548 * 17 16 15 37 37 H 1.08999 * 110.48723 * 339.60198 * 20 18 17 38 38 H 1.09001 * 110.48721 * 102.11557 * 20 18 17 39 39 H 1.08997 * 109.87886 * 117.39486 * 21 20 18 40 40 H 1.08999 * 109.87849 * 238.55091 * 21 20 18 41 41 H 1.08996 * 110.65144 * 201.48826 * 23 22 21 42 42 H 1.08994 * 110.60324 * 78.46982 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5333 -3.5745 15 6 2.6599 0.4197 -4.7697 16 8 3.1391 -0.2862 -5.9161 17 6 3.2385 0.5174 -7.0937 18 6 3.7595 -0.3368 -8.2514 19 1 4.6960 -0.8248 -7.9815 20 6 3.9294 0.5145 -9.5331 21 6 3.4148 -0.3977 -10.6635 22 8 3.0458 -1.6519 -10.0659 23 6 2.6993 -1.3786 -8.6907 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9040 -0.5274 4.4375 28 1 1.4495 -1.4979 -1.4100 29 1 1.0871 0.6162 -2.5525 30 1 2.7588 1.0461 -2.1183 31 1 3.5903 -0.9274 -3.3691 32 1 1.9181 -1.3566 -3.8030 33 1 1.6646 0.8135 -4.9749 34 1 3.3365 1.2432 -4.5414 35 1 2.2553 0.9132 -7.3476 36 1 3.9271 1.3428 -6.9132 37 1 3.3280 1.4215 -9.4712 38 1 4.9790 0.7638 -9.6892 39 1 2.5455 0.0561 -11.1393 40 1 4.2027 -0.5557 -11.3999 41 1 2.7772 -2.2832 -8.0876 42 1 1.6964 -0.9570 -8.6245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309360572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:16 Heat of formation + Delta-G solvation = -122.955508 kcal Electronic energy + Delta-G solvation = -18808.621174 eV Core-core repulsion = 15787.500405 eV Total energy + Delta-G solvation = -3021.120769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50906 -38.98142 -38.06251 -35.13175 -34.05440 -33.07219 -30.62908 -29.88182 -27.14743 -26.62006 -25.09450 -23.38888 -22.45840 -22.05846 -21.41271 -18.78771 -17.99074 -17.36949 -17.04456 -16.88796 -16.80191 -16.27523 -15.87019 -15.66003 -15.13153 -14.83252 -14.50604 -14.40927 -14.05457 -13.70399 -13.51396 -13.36507 -12.83186 -12.78172 -12.60311 -12.37670 -12.26384 -12.03458 -11.98017 -11.88066 -11.67815 -11.56427 -11.43551 -11.17183 -10.74679 -10.68188 -10.52912 -9.02817 -8.26580 -6.29474 1.30211 1.35871 1.46422 2.32827 2.51038 3.03588 3.07309 3.53397 3.60889 3.78713 3.96562 4.04794 4.18629 4.25992 4.26906 4.36220 4.39077 4.45901 4.50924 4.54583 4.58541 4.61401 4.65373 4.74619 4.77607 4.82129 4.86194 4.88751 4.96405 5.04503 5.19409 5.21628 5.31264 5.39323 5.67238 5.89459 6.03252 6.26182 6.69826 6.75164 6.79047 7.35646 8.91030 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.060008 B = 0.002663 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.496322 B =10513.146712 C =10612.548496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.186 3.814 3 H 0.030 0.970 4 C -0.507 4.507 5 H 0.033 0.967 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.299 1.299 11 H -0.248 1.248 12 N -0.690 5.690 13 C 0.064 3.936 14 C -0.106 4.106 15 C 0.071 3.929 16 O -0.408 6.408 17 C 0.070 3.930 18 C -0.120 4.120 19 H 0.083 0.917 20 C -0.143 4.143 21 C 0.039 3.961 22 O -0.408 6.408 23 C 0.053 3.947 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.265 0.735 28 H 0.337 0.663 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 7.353 -28.073 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 H 0.048 0.952 4 C -0.545 4.545 5 H 0.051 0.949 6 C -0.192 4.192 7 N -0.593 5.593 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.227 1.227 11 H -0.172 1.172 12 N -0.320 5.320 13 C -0.065 4.065 14 C -0.144 4.144 15 C -0.006 4.006 16 O -0.328 6.328 17 C -0.006 4.006 18 C -0.139 4.139 19 H 0.102 0.898 20 C -0.180 4.180 21 C -0.037 4.037 22 O -0.328 6.328 23 C -0.024 4.024 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.009 7.042 -27.849 28.726 hybrid contribution -1.208 0.713 0.739 1.586 sum -1.199 7.756 -27.111 28.224 Atomic orbital electron populations 1.22717 0.99296 1.01480 1.00085 1.19418 0.90136 0.94122 0.88647 0.95240 1.21313 1.30295 1.12550 0.90359 0.94865 1.25877 0.97678 1.00277 0.95334 1.70057 1.48024 1.42699 0.98557 0.85753 0.78917 0.79753 0.77278 1.19247 1.22709 1.17168 1.60396 1.58387 1.09834 1.03421 1.21848 0.99366 0.95473 0.89858 1.21344 1.02328 0.98564 0.92211 1.22400 0.98884 0.94468 0.84862 1.87850 1.87320 1.38581 1.19007 1.22551 1.00707 0.93284 0.84077 1.22690 0.99883 0.96834 0.94487 0.89811 1.22928 1.03961 0.99011 0.92125 1.23356 1.00357 0.83789 0.96224 1.88860 1.87940 1.30923 1.25051 1.23634 0.97546 0.99419 0.81776 0.94530 0.91914 0.92646 0.92603 0.84498 0.94523 0.91836 0.91939 0.91381 0.91960 0.92460 0.91813 0.91772 0.88803 0.88866 0.91279 0.88814 0.89431 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.09 8.64 71.98 0.62 -6.46 16 2 C 0.19 8.57 2.17 44.17 0.10 8.67 16 3 H 0.03 1.39 6.86 -2.39 -0.02 1.37 16 4 C -0.51 -29.40 9.42 25.60 0.24 -29.16 16 5 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 6 C 0.00 0.28 5.45 84.65 0.46 0.74 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.96 44.78 24.37 68.60 1.67 46.46 16 9 H -0.27 -11.80 6.87 99.48 0.68 -11.12 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.25 -10.62 6.53 99.48 0.65 -9.97 16 12 N -0.69 -27.40 6.23 -495.45 -3.09 -30.48 16 13 C 0.06 1.94 5.48 86.30 0.47 2.41 16 14 C -0.11 -2.75 5.84 30.59 0.18 -2.57 16 15 C 0.07 1.45 5.94 71.98 0.43 1.88 16 16 O -0.41 -8.85 10.25 -148.98 -1.53 -10.38 16 17 C 0.07 1.06 5.27 71.98 0.38 1.44 16 18 C -0.12 -1.79 3.39 -9.49 -0.03 -1.83 16 19 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 20 C -0.14 -1.42 6.60 31.58 0.21 -1.22 16 21 C 0.04 0.49 7.70 72.35 0.56 1.04 16 22 O -0.41 -8.18 11.52 -148.98 -1.72 -9.89 16 23 C 0.05 0.92 7.09 72.67 0.52 1.44 16 24 H 0.04 1.52 3.27 -2.39 -0.01 1.52 16 25 H 0.06 2.05 7.45 -2.39 -0.02 2.03 16 26 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.34 12.59 8.47 -89.70 -0.76 11.83 16 29 H 0.04 1.00 7.44 -2.39 -0.02 0.98 16 30 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 0.79 8.05 -2.39 -0.02 0.78 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.65 7.86 -2.39 -0.02 0.63 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.07 7.98 -2.39 -0.02 1.05 16 Total: -1.00 -69.13 331.17 -0.10 -69.23 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.14 Total: 18.85 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.13 Total: -23.62 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -2.79 Total: -90.64 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -3.24 Total: -20.28 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.67 Total: 46.46 kcal Total: -69.13 -0.10 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309360572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.726 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds