Wall clock time and date at job start Mon Mar 30 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47065 * 2 1 4 4 C 1.50697 * 109.47450 * 239.98862 * 2 1 3 5 5 H 1.07999 * 120.00272 * 240.00468 * 4 2 1 6 6 C 1.37883 * 119.99654 * 60.00453 * 4 2 1 7 7 N 1.31516 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47011 * 60.00473 * 8 6 4 10 10 H 1.48504 * 109.47018 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47462 * 299.99885 * 8 6 4 12 12 N 1.46903 * 109.46671 * 119.99236 * 2 1 3 13 13 C 1.46901 * 111.00234 * 275.00231 * 12 2 1 14 14 C 1.52996 * 109.47379 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47131 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.47264 * 180.02562 * 15 14 13 17 17 C 1.42901 * 114.00134 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47091 * 179.97438 * 17 16 15 19 19 H 1.08998 * 110.75301 * 54.29683 * 18 17 16 20 20 C 1.55301 * 110.84964 * 177.77206 * 18 17 16 21 21 C 1.55209 * 100.82702 * 152.18039 * 20 18 17 22 22 O 1.43647 * 105.25997 * 323.81679 * 21 20 18 23 23 C 1.43235 * 109.97083 * 24.28615 * 22 21 20 24 24 H 1.08994 * 109.47065 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47212 * 300.00761 * 1 2 3 26 26 H 1.09004 * 109.46580 * 60.00728 * 1 2 3 27 27 H 0.97008 * 119.99335 * 180.02562 * 7 6 4 28 28 H 1.00894 * 111.00140 * 151.04905 * 12 2 1 29 29 H 1.09001 * 109.46874 * 59.99998 * 13 12 2 30 30 H 1.09004 * 109.46970 * 300.00131 * 13 12 2 31 31 H 1.09001 * 109.46997 * 60.00222 * 14 13 12 32 32 H 1.08992 * 109.47534 * 300.00276 * 14 13 12 33 33 H 1.09001 * 109.47289 * 60.00050 * 15 14 13 34 34 H 1.09004 * 109.47261 * 300.00306 * 15 14 13 35 35 H 1.08994 * 109.47036 * 300.00109 * 17 16 15 36 36 H 1.09002 * 109.46796 * 60.00253 * 17 16 15 37 37 H 1.08992 * 111.12824 * 270.24151 * 20 18 17 38 38 H 1.08999 * 111.12293 * 34.40738 * 20 18 17 39 39 H 1.09004 * 110.36991 * 204.80618 * 21 20 18 40 40 H 1.08994 * 110.21228 * 82.75143 * 21 20 18 41 41 H 1.09002 * 109.83392 * 238.77703 * 23 22 21 42 42 H 1.08998 * 109.90655 * 117.84380 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1310 6 6 1.6994 -0.2397 -2.4827 7 7 0.9438 0.8299 -2.6034 8 14 2.3228 -1.1201 -4.0077 9 1 1.8282 -2.5204 -4.0078 10 1 1.8272 -0.4206 -5.2204 11 1 3.8077 -1.1196 -4.0074 12 7 2.0196 -0.6924 1.1996 13 6 2.0823 0.2228 2.3470 14 6 2.5948 -0.5328 3.5747 15 6 2.6607 0.4206 4.7695 16 8 3.1399 -0.2850 5.9161 17 6 3.2402 0.5189 7.0933 18 6 3.7598 -0.3353 8.2514 19 1 4.6957 -0.8243 7.9810 20 6 3.9344 0.5212 9.5350 21 6 3.7303 -0.5557 10.6340 22 8 2.7214 -1.4376 10.1164 23 6 2.7030 -1.3737 8.6856 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7092 1.1610 -3.4846 28 1 2.9172 -1.1204 1.0290 29 1 1.0869 0.6165 2.5525 30 1 2.7588 1.0464 2.1182 31 1 3.5901 -0.9268 3.3695 32 1 1.9181 -1.3561 3.8032 33 1 1.6655 0.8151 4.9749 34 1 3.3377 1.2437 4.5407 35 1 3.9291 1.3439 6.9122 36 1 2.2571 0.9154 7.3473 37 1 4.9333 0.9541 9.5856 38 1 3.1692 1.2949 9.5980 39 1 3.3891 -0.0928 11.5600 40 1 4.6585 -1.1010 10.8039 41 1 1.7164 -1.0628 8.3420 42 1 2.9496 -2.3495 8.2673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309360573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:19 Heat of formation + Delta-G solvation = -129.885708 kcal Electronic energy + Delta-G solvation = -18743.152700 eV Core-core repulsion = 15721.731416 eV Total energy + Delta-G solvation = -3021.421285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52567 -38.96334 -37.85404 -35.19708 -34.00497 -32.71021 -30.53838 -29.60269 -27.37653 -26.61785 -25.08438 -23.24992 -22.47706 -21.72513 -21.53265 -18.54471 -18.04127 -17.35058 -17.11423 -17.02694 -16.77359 -16.01280 -15.81111 -15.54766 -15.09669 -14.75136 -14.54059 -14.16566 -13.72076 -13.60897 -13.29067 -12.97340 -12.77358 -12.71026 -12.61430 -12.30087 -12.24025 -12.17520 -12.14335 -11.98091 -11.70935 -11.66770 -11.64544 -10.90501 -10.58158 -10.57413 -10.50298 -9.08054 -8.14107 -6.28501 1.42672 1.44916 1.52463 2.40358 2.51791 2.95601 3.14327 3.46879 3.63823 3.84288 3.93153 4.03669 4.21400 4.26050 4.29890 4.33765 4.38694 4.51102 4.54829 4.61481 4.65589 4.73355 4.80251 4.84423 4.88938 4.91464 4.98228 5.07004 5.18541 5.21043 5.22535 5.24705 5.48267 5.66473 5.85068 6.01393 6.21155 6.23387 6.46011 6.76568 6.98819 7.41880 8.91504 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.060051 B = 0.002545 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.158755 B =11001.042813 C =11074.531091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.102 4.102 15 C 0.071 3.929 16 O -0.405 6.405 17 C 0.069 3.931 18 C -0.119 4.119 19 H 0.092 0.908 20 C -0.141 4.141 21 C 0.043 3.957 22 O -0.413 6.413 23 C 0.056 3.944 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 1.524 23.358 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.140 4.140 15 C -0.006 4.006 16 O -0.325 6.325 17 C -0.008 4.008 18 C -0.138 4.138 19 H 0.111 0.889 20 C -0.178 4.178 21 C -0.033 4.033 22 O -0.333 6.333 23 C -0.020 4.020 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.860 1.080 23.508 24.251 hybrid contribution 0.868 0.587 -1.455 1.793 sum 6.729 1.667 22.053 23.117 Atomic orbital electron populations 1.21556 0.97734 0.98875 0.99119 1.18931 0.92792 0.90827 0.86891 1.01180 1.21574 1.31864 1.12788 0.91646 0.92221 1.25768 0.95162 0.95706 1.02132 1.70021 1.37386 1.24019 1.24287 0.85511 0.78748 0.78614 0.78140 1.19673 1.20873 1.19496 1.60616 1.32397 1.33562 1.05559 1.21797 0.99772 0.93865 0.90908 1.21319 1.01925 0.98619 0.92169 1.22388 0.98722 0.94484 0.85001 1.87840 1.87226 1.38533 1.18944 1.22561 1.00619 0.93418 0.84161 1.22710 0.99642 0.96598 0.94804 0.88946 1.23313 1.04855 0.97985 0.91669 1.23630 0.91703 0.90180 0.97778 1.88379 1.58360 1.66070 1.20498 1.23163 0.99235 0.99318 0.80295 0.95390 0.95834 0.92371 0.92777 0.84915 0.91989 0.96362 0.91569 0.91271 0.92459 0.92441 0.91472 0.92349 0.87460 0.89402 0.88206 0.91339 0.91519 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.19 71.98 0.66 -5.16 16 2 C 0.21 11.11 2.60 44.17 0.11 11.22 16 3 H -0.03 -1.67 7.80 -2.39 -0.02 -1.69 16 4 C -0.54 -30.05 8.59 25.60 0.22 -29.83 16 5 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.94 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.69 -29.81 6.30 -495.44 -3.12 -32.93 16 13 C 0.07 2.33 5.48 86.30 0.47 2.80 16 14 C -0.10 -2.91 5.84 30.59 0.18 -2.74 16 15 C 0.07 1.65 5.94 71.98 0.43 2.08 16 16 O -0.41 -9.47 10.24 -148.98 -1.53 -11.00 16 17 C 0.07 1.15 5.26 71.98 0.38 1.53 16 18 C -0.12 -1.82 3.26 -9.53 -0.03 -1.85 16 19 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 20 C -0.14 -1.46 6.64 32.14 0.21 -1.25 16 21 C 0.04 0.55 7.78 72.74 0.57 1.12 16 22 O -0.41 -8.60 11.36 -148.98 -1.69 -10.29 16 23 C 0.06 1.09 7.31 72.45 0.53 1.62 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.02 1.05 7.45 -2.39 -0.02 1.03 16 26 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 27 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 28 H 0.33 13.99 8.22 -89.70 -0.74 13.25 16 29 H 0.06 2.19 7.44 -2.39 -0.02 2.18 16 30 H 0.02 0.65 8.06 -2.38 -0.02 0.63 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.90 8.00 -2.39 -0.02 0.88 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.82 8.04 -2.39 -0.02 0.80 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.33 7.72 -2.39 -0.02 1.31 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.22 337.59 0.34 -62.88 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.23 Total: 18.04 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.18 Total: -19.37 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.88 Total: -85.88 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -3.22 Total: -21.29 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.22 0.34 -62.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309360573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.005 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds