Wall clock time and date at job start Mon Mar 30 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99756 * 2 1 3 5 5 C 1.50699 * 109.46866 * 184.99981 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46897 * 109.46934 * 239.99724 * 2 1 3 14 14 C 1.46898 * 111.00134 * 85.00590 * 13 2 1 15 15 C 1.53003 * 109.47387 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47273 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.42898 * 114.00119 * 180.02562 * 17 16 15 19 19 H 1.08995 * 110.75662 * 32.01536 * 18 17 16 20 20 C 1.55306 * 110.84811 * 155.71402 * 18 17 16 21 21 C 1.54944 * 100.94075 * 152.31997 * 20 18 17 22 22 O 1.43644 * 105.14098 * 323.55370 * 21 20 18 23 23 C 1.43242 * 109.96656 * 24.42978 * 22 21 20 24 24 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47273 * 300.00092 * 1 2 3 26 26 H 1.09002 * 109.46911 * 60.00164 * 1 2 3 27 27 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 28 28 H 1.09000 * 109.47050 * 65.00029 * 4 2 1 29 29 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99744 * 208.95782 * 13 2 1 31 31 H 1.09001 * 109.46587 * 299.99529 * 14 13 2 32 32 H 1.08991 * 109.47405 * 59.99396 * 14 13 2 33 33 H 1.09000 * 109.46627 * 300.00112 * 15 14 13 34 34 H 1.08998 * 109.46847 * 59.99552 * 15 14 13 35 35 H 1.09001 * 109.47079 * 299.99928 * 16 15 14 36 36 H 1.09005 * 109.47053 * 59.99859 * 16 15 14 37 37 H 1.08991 * 111.12888 * 270.23994 * 20 18 17 38 38 H 1.09002 * 111.12539 * 34.40580 * 20 18 17 39 39 H 1.09008 * 110.31276 * 204.63921 * 21 20 18 40 40 H 1.08998 * 110.39511 * 82.51395 * 21 20 18 41 41 H 1.09007 * 109.83009 * 238.77546 * 23 22 21 42 42 H 1.08999 * 109.90592 * 117.84879 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0862 0.5392 7 6 4.2304 -1.1935 2.3579 8 7 5.5411 -1.1011 2.4130 9 14 3.3015 -2.1085 3.6955 10 1 3.1698 -3.5384 3.3171 11 1 4.0452 -2.0019 4.9763 12 1 1.9507 -1.5128 3.8563 13 7 2.0196 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5963 -0.5330 -3.5742 16 6 2.6612 0.4198 -4.7694 17 8 3.1415 -0.2856 -5.9155 18 6 3.2410 0.5178 -7.0930 19 1 3.4841 1.5491 -6.8375 20 6 4.2858 -0.0730 -8.0786 21 6 3.7320 0.4350 -9.4336 22 8 2.3030 0.3771 -9.3003 23 6 1.9374 0.4486 -7.9171 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 6.0255 -1.5078 3.1485 30 1 2.9173 -1.1206 -1.0286 31 1 1.0871 0.6162 -2.5525 32 1 2.7588 1.0460 -2.1182 33 1 3.5917 -0.9265 -3.3681 34 1 1.9202 -1.3568 -3.8029 35 1 1.6655 0.8129 -4.9752 36 1 3.3370 1.2439 -4.5408 37 1 5.2801 0.3293 -7.8849 38 1 4.2904 -1.1623 -8.0397 39 1 4.0629 -0.2137 -10.2447 40 1 4.0538 1.4605 -9.6149 41 1 1.3703 -0.4396 -7.6381 42 1 1.3383 1.3412 -7.7373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309748261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:32 Heat of formation + Delta-G solvation = -109.950651 kcal Electronic energy + Delta-G solvation = -18980.306898 eV Core-core repulsion = 15959.750062 eV Total energy + Delta-G solvation = -3020.556836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91389 -37.72807 -36.78097 -33.63109 -32.30564 -31.46429 -29.48197 -28.67130 -27.86970 -24.47698 -22.84908 -22.42241 -21.86645 -20.99341 -19.36565 -17.59444 -16.91980 -16.82432 -15.97063 -15.71699 -15.17210 -14.95516 -14.53221 -14.23998 -13.87319 -13.53125 -13.40082 -12.74627 -12.64772 -12.39560 -12.12283 -11.93921 -11.80874 -11.72958 -11.57515 -11.20654 -11.01605 -10.94829 -10.82687 -10.66102 -10.23802 -9.90182 -9.81665 -9.71727 -9.48382 -9.23424 -8.57706 -7.73825 -6.08978 -4.07673 3.19970 3.30273 3.37499 3.41427 3.65209 4.10710 4.42621 4.52390 4.60215 4.70727 4.82989 5.00032 5.02779 5.16428 5.28644 5.33115 5.35038 5.38310 5.43470 5.55784 5.57182 5.66412 5.72573 5.79698 5.94640 6.06340 6.17757 6.32644 6.34228 6.45883 6.59745 6.69908 6.77080 7.01210 7.17217 7.26716 7.73716 7.87588 8.20169 8.45797 8.92501 9.53759 11.03990 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.003096 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.805994 B = 9042.640678 C = 9635.702698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.035 0.965 4 C -0.017 4.017 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.684 5.684 14 C 0.064 3.936 15 C -0.116 4.116 16 C 0.063 3.937 17 O -0.369 6.369 18 C 0.056 3.944 19 H 0.078 0.922 20 C -0.154 4.154 21 C 0.051 3.949 22 O -0.381 6.381 23 C 0.027 3.973 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.263 0.737 30 H 0.359 0.641 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 4.352 -19.153 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.055 4.055 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.319 5.319 14 C -0.066 4.066 15 C -0.154 4.154 16 C -0.014 4.014 17 O -0.288 6.288 18 C -0.003 4.003 19 H 0.096 0.904 20 C -0.191 4.191 21 C -0.025 4.025 22 O -0.301 6.301 23 C -0.050 4.050 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.180 0.820 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.102 3.840 -19.356 20.655 hybrid contribution 0.565 0.417 1.218 1.406 sum -5.538 4.257 -18.137 19.436 Atomic orbital electron populations 1.21835 0.96639 1.01391 0.99748 1.21390 0.93225 0.96039 0.90687 0.94729 1.19777 0.97020 0.96012 0.92701 1.21076 0.89886 1.35382 1.09891 0.91319 1.25015 0.94694 0.95694 0.97889 1.69916 1.06595 1.45205 1.32323 0.86738 0.80380 0.80589 0.81334 1.20190 1.21518 1.19027 1.60551 1.35173 1.31963 1.04206 1.21780 0.99564 0.94285 0.90988 1.21478 1.03057 0.98687 0.92178 1.22606 0.97914 0.95258 0.85643 1.87962 1.86422 1.36764 1.17641 1.23636 0.94541 0.95444 0.86666 0.90403 1.23315 0.99089 1.03256 0.93448 1.23351 0.80912 1.00821 0.97443 1.88424 1.21899 1.95446 1.24303 1.23689 0.97315 1.02520 0.81452 0.92621 0.93300 0.94144 0.96048 0.96025 0.92703 0.81989 0.91873 0.95630 0.90939 0.90409 0.93244 0.93138 0.89188 0.89026 0.89236 0.91918 0.90035 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.16 0.35 -1.97 16 2 C 0.10 1.91 2.59 -67.71 -0.18 1.74 16 3 H 0.03 0.72 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.51 16 5 C -0.52 -14.48 8.67 -34.44 -0.30 -14.78 16 6 H 0.07 2.03 7.73 -52.48 -0.41 1.62 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 9 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 13 N -0.68 -12.86 6.31 -106.73 -0.67 -13.53 16 14 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 15 C -0.12 -1.59 5.84 -26.73 -0.16 -1.75 16 16 C 0.06 0.72 5.81 37.15 0.22 0.94 16 17 O -0.37 -4.51 10.08 -35.23 -0.36 -4.86 16 18 C 0.06 0.54 3.45 -24.78 -0.09 0.45 16 19 H 0.08 0.65 7.89 -51.93 -0.41 0.24 16 20 C -0.15 -1.27 6.89 -24.48 -0.17 -1.44 16 21 C 0.05 0.40 7.78 38.18 0.30 0.70 16 22 O -0.38 -4.12 11.36 -35.23 -0.40 -4.52 16 23 C 0.03 0.27 7.58 37.88 0.29 0.55 16 24 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 27 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 28 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.36 7.50 7.21 -39.29 -0.28 7.22 16 31 H 0.06 0.89 7.44 -51.93 -0.39 0.51 16 32 H 0.03 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.84 8.05 -51.93 -0.42 0.43 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -30.38 336.78 -7.90 -38.28 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.70 Total: 2.44 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.05 Total: -13.24 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.10 Total: -40.13 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.76 Total: -9.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.38 -7.90 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309748261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.670 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds