Wall clock time and date at job start Mon Mar 30 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99756 * 2 1 3 5 5 C 1.50699 * 109.46866 * 184.99981 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46897 * 109.46934 * 239.99724 * 2 1 3 14 14 C 1.46898 * 111.00134 * 85.00590 * 13 2 1 15 15 C 1.53003 * 109.47387 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47273 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.42898 * 114.00119 * 180.02562 * 17 16 15 19 19 H 1.08995 * 110.75662 * 32.01536 * 18 17 16 20 20 C 1.55306 * 110.84811 * 155.71402 * 18 17 16 21 21 C 1.54944 * 100.94075 * 152.31997 * 20 18 17 22 22 O 1.43644 * 105.14098 * 323.55370 * 21 20 18 23 23 C 1.43242 * 109.96656 * 24.42978 * 22 21 20 24 24 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47273 * 300.00092 * 1 2 3 26 26 H 1.09002 * 109.46911 * 60.00164 * 1 2 3 27 27 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 28 28 H 1.09000 * 109.47050 * 65.00029 * 4 2 1 29 29 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99744 * 208.95782 * 13 2 1 31 31 H 1.09001 * 109.46587 * 299.99529 * 14 13 2 32 32 H 1.08991 * 109.47405 * 59.99396 * 14 13 2 33 33 H 1.09000 * 109.46627 * 300.00112 * 15 14 13 34 34 H 1.08998 * 109.46847 * 59.99552 * 15 14 13 35 35 H 1.09001 * 109.47079 * 299.99928 * 16 15 14 36 36 H 1.09005 * 109.47053 * 59.99859 * 16 15 14 37 37 H 1.08991 * 111.12888 * 270.23994 * 20 18 17 38 38 H 1.09002 * 111.12539 * 34.40580 * 20 18 17 39 39 H 1.09008 * 110.31276 * 204.63921 * 21 20 18 40 40 H 1.08998 * 110.39511 * 82.51395 * 21 20 18 41 41 H 1.09007 * 109.83009 * 238.77546 * 23 22 21 42 42 H 1.08999 * 109.90592 * 117.84879 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0862 0.5392 7 6 4.2304 -1.1935 2.3579 8 7 5.5411 -1.1011 2.4130 9 14 3.3015 -2.1085 3.6955 10 1 3.1698 -3.5384 3.3171 11 1 4.0452 -2.0019 4.9763 12 1 1.9507 -1.5128 3.8563 13 7 2.0196 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5963 -0.5330 -3.5742 16 6 2.6612 0.4198 -4.7694 17 8 3.1415 -0.2856 -5.9155 18 6 3.2410 0.5178 -7.0930 19 1 3.4841 1.5491 -6.8375 20 6 4.2858 -0.0730 -8.0786 21 6 3.7320 0.4350 -9.4336 22 8 2.3030 0.3771 -9.3003 23 6 1.9374 0.4486 -7.9171 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 6.0255 -1.5078 3.1485 30 1 2.9173 -1.1206 -1.0286 31 1 1.0871 0.6162 -2.5525 32 1 2.7588 1.0460 -2.1182 33 1 3.5917 -0.9265 -3.3681 34 1 1.9202 -1.3568 -3.8029 35 1 1.6655 0.8129 -4.9752 36 1 3.3370 1.2439 -4.5408 37 1 5.2801 0.3293 -7.8849 38 1 4.2904 -1.1623 -8.0397 39 1 4.0629 -0.2137 -10.2447 40 1 4.0538 1.4605 -9.6149 41 1 1.3703 -0.4396 -7.6381 42 1 1.3383 1.3412 -7.7373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309748261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:31 Heat of formation + Delta-G solvation = -131.247462 kcal Electronic energy + Delta-G solvation = -18981.230397 eV Core-core repulsion = 15959.750062 eV Total energy + Delta-G solvation = -3021.480335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66178 -38.80217 -38.08867 -35.20820 -34.06017 -32.35614 -30.69872 -29.72295 -29.43334 -25.71612 -24.37188 -23.39768 -22.68426 -22.10263 -20.99902 -18.97123 -18.38298 -17.66457 -17.02717 -16.71662 -16.46006 -16.15628 -16.02680 -15.56990 -14.88502 -14.76217 -14.44232 -14.23584 -14.04615 -13.55721 -13.45156 -13.29816 -13.20974 -12.84425 -12.55083 -12.51882 -12.31224 -12.20829 -12.05925 -11.78650 -11.71820 -11.69984 -11.28489 -11.21067 -10.76409 -10.65040 -10.52310 -9.24246 -8.29183 -6.32501 1.37635 1.38102 1.50056 2.36430 2.37278 2.94501 3.05590 3.41462 3.48702 3.84566 3.93073 3.98515 4.11734 4.19436 4.24597 4.25801 4.34941 4.47455 4.52141 4.61053 4.64899 4.71022 4.72549 4.74119 4.79238 4.90575 4.98951 5.03053 5.12594 5.15074 5.21713 5.23628 5.38365 5.50666 5.67741 5.91675 6.16786 6.23029 6.37311 6.55930 6.73906 7.32190 8.86927 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.003096 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.805994 B = 9042.640678 C = 9635.702698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.022 0.978 4 C -0.014 4.014 5 C -0.525 4.525 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.688 5.688 14 C 0.067 3.933 15 C -0.108 4.108 16 C 0.067 3.933 17 O -0.389 6.389 18 C 0.050 3.950 19 H 0.094 0.906 20 C -0.153 4.153 21 C 0.049 3.951 22 O -0.404 6.404 23 C 0.028 3.972 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.341 0.659 31 H 0.084 0.916 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 4.727 -19.593 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.040 0.960 4 C -0.052 4.052 5 C -0.563 4.563 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.146 4.146 16 C -0.009 4.009 17 O -0.309 6.309 18 C -0.008 4.008 19 H 0.112 0.888 20 C -0.190 4.190 21 C -0.027 4.027 22 O -0.324 6.324 23 C -0.049 4.049 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.888 4.231 -19.818 21.746 hybrid contribution 1.176 0.341 1.256 1.755 sum -6.712 4.572 -18.562 20.260 Atomic orbital electron populations 1.21748 0.93574 1.01989 1.01434 1.21357 0.95563 0.94746 0.89630 0.95957 1.19734 0.94119 0.96528 0.94823 1.21354 0.92134 1.34127 1.08644 0.94854 1.25953 0.95501 0.96890 1.00668 1.70063 1.08480 1.46930 1.33535 0.85667 0.79658 0.79366 0.77977 1.19438 1.21275 1.17086 1.60657 1.33951 1.32690 1.04746 1.21836 1.00595 0.93574 0.90279 1.21351 1.01684 0.98951 0.92642 1.22522 0.99168 0.94465 0.84765 1.87928 1.86624 1.37898 1.18422 1.23831 0.95005 0.96059 0.85903 0.88827 1.23341 0.99610 1.02592 0.93475 1.23535 0.79496 1.02176 0.97456 1.88393 1.23619 1.95624 1.24735 1.23688 0.97426 1.02606 0.81211 0.92516 0.92158 0.92004 0.95707 0.95953 0.92599 0.83987 0.89807 0.96456 0.92868 0.90719 0.91378 0.92500 0.87721 0.90197 0.87988 0.90212 0.91181 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.41 71.98 0.68 -3.31 16 2 C 0.10 3.75 2.59 44.92 0.12 3.87 16 3 H 0.02 0.91 7.80 -2.39 -0.02 0.90 16 4 C -0.01 -0.67 3.64 29.85 0.11 -0.56 16 5 C -0.52 -29.48 8.67 25.60 0.22 -29.26 16 6 H 0.03 2.05 7.73 -2.91 -0.02 2.03 16 7 C 0.01 0.40 5.47 84.65 0.46 0.86 16 8 N -0.95 -59.03 13.96 21.45 0.30 -58.74 16 9 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 13 N -0.69 -25.61 6.31 -491.58 -3.10 -28.71 16 14 C 0.07 1.99 5.48 86.30 0.47 2.46 16 15 C -0.11 -2.92 5.84 30.59 0.18 -2.75 16 16 C 0.07 1.47 5.81 71.98 0.42 1.89 16 17 O -0.39 -9.16 10.08 -148.98 -1.50 -10.66 16 18 C 0.05 0.90 3.45 31.86 0.11 1.01 16 19 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 20 C -0.15 -2.34 6.89 32.05 0.22 -2.12 16 21 C 0.05 0.68 7.78 72.65 0.56 1.25 16 22 O -0.40 -8.22 11.36 -148.98 -1.69 -9.92 16 23 C 0.03 0.51 7.58 72.45 0.55 1.06 16 24 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.64 7.45 -2.39 -0.02 1.62 16 27 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 28 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.34 14.65 7.21 -89.69 -0.65 14.01 16 31 H 0.08 2.17 7.44 -2.39 -0.02 2.15 16 32 H 0.02 0.55 8.05 -2.39 -0.02 0.53 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.16 8.11 -2.38 -0.02 1.14 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.42 8.05 -2.38 -0.02 1.40 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.71 336.78 0.26 -65.45 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.26 Total: 22.00 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.10 Total: -25.59 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.80 Total: -87.45 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -3.19 Total: -20.57 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -65.71 0.26 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309748261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.793 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds