Wall clock time and date at job start Mon Mar 30 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47068 * 2 1 4 4 C 1.52998 * 109.47183 * 120.00305 * 2 1 3 5 5 C 1.50703 * 109.47144 * 185.00086 * 4 2 1 6 6 H 1.08000 * 119.99717 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00045 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00008 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47364 * 90.00205 * 9 7 5 11 11 H 1.48500 * 109.46918 * 210.00460 * 9 7 5 12 12 H 1.48505 * 109.47228 * 330.00229 * 9 7 5 13 13 N 1.46906 * 109.47032 * 240.00371 * 2 1 3 14 14 C 1.46899 * 110.99987 * 84.99788 * 13 2 1 15 15 C 1.53002 * 109.46830 * 174.72802 * 14 13 2 16 16 C 1.53008 * 110.45412 * 59.69569 * 15 14 13 17 17 C 1.52996 * 109.47399 * 60.58611 * 16 15 14 18 18 O 1.42896 * 109.47249 * 181.41878 * 17 16 15 19 19 C 1.54505 * 110.50890 * 182.29553 * 15 14 13 20 20 C 1.54480 * 104.06217 * 118.78511 * 19 15 14 21 21 O 1.44422 * 104.80127 * 336.02307 * 20 19 15 22 22 C 1.44419 * 105.27675 * 40.50842 * 21 20 19 23 23 H 1.08998 * 109.47433 * 60.00135 * 1 2 3 24 24 H 1.09007 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47400 * 299.99664 * 1 2 3 26 26 H 1.08999 * 109.47169 * 304.99971 * 4 2 1 27 27 H 1.08996 * 109.47134 * 64.99897 * 4 2 1 28 28 H 0.97002 * 120.00479 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00059 * 321.04345 * 13 2 1 30 30 H 1.08999 * 109.46928 * 54.73206 * 14 13 2 31 31 H 1.08994 * 109.47428 * 294.73045 * 14 13 2 32 32 H 1.09003 * 109.46921 * 180.59245 * 16 15 14 33 33 H 1.09005 * 109.46748 * 300.58892 * 16 15 14 34 34 H 1.08996 * 109.47176 * 301.42502 * 17 16 15 35 35 H 1.09005 * 109.46780 * 61.42005 * 17 16 15 36 36 H 0.96701 * 114.00437 * 180.02562 * 18 17 16 37 37 H 1.09003 * 110.51364 * 0.13816 * 19 15 14 38 38 H 1.09007 * 110.51184 * 237.42814 * 19 15 14 39 39 H 1.09006 * 110.37316 * 94.85383 * 20 19 15 40 40 H 1.08997 * 110.37138 * 217.18762 * 20 19 15 41 41 H 1.09001 * 110.37468 * 200.65407 * 22 21 20 42 42 H 1.09010 * 110.37054 * 78.32172 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5391 7 6 4.2304 -1.1927 2.3582 8 7 3.5764 -1.8370 3.2999 9 14 6.0921 -1.0615 2.4365 10 1 6.4710 0.1613 3.1892 11 1 6.6441 -2.2566 3.1236 12 1 6.6413 -0.9848 1.0589 13 7 2.0196 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.7180 -0.4964 -3.5385 16 6 1.8947 -1.7281 -3.9209 17 6 0.4807 -1.2949 -4.3131 18 8 -0.2978 -2.4481 -4.6385 19 6 2.8484 0.4628 -4.7428 20 6 4.3689 0.5280 -5.0078 21 8 4.9786 0.1809 -3.7454 22 6 4.1750 -0.8972 -3.2184 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0607 -2.2439 4.0353 29 1 1.4495 -1.4979 -1.4102 30 1 2.6838 1.0932 -2.0849 31 1 1.0748 0.5435 -2.6114 32 1 2.3668 -2.2334 -4.7635 33 1 1.8435 -2.4090 -3.0712 34 1 0.0179 -0.7674 -3.4791 35 1 0.5302 -0.6339 -5.1785 36 1 -1.2078 -2.2482 -4.8975 37 1 2.4623 1.4499 -4.4885 38 1 2.3264 0.0594 -5.6106 39 1 4.6514 -0.1916 -5.7762 40 1 4.6593 1.5356 -5.3052 41 1 4.3166 -0.9845 -2.1411 42 1 4.4277 -1.8355 -3.7124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309803527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:08 Heat of formation + Delta-G solvation = -110.893349 kcal Electronic energy + Delta-G solvation = -20571.142945 eV Core-core repulsion = 17550.545231 eV Total energy + Delta-G solvation = -3020.597714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99951 -37.18798 -36.52046 -34.22494 -32.41195 -30.24865 -29.56738 -27.91261 -27.18316 -24.73520 -23.11021 -22.83744 -22.12243 -19.75585 -18.79432 -17.61667 -16.28731 -16.08990 -15.57600 -15.47521 -14.94047 -14.79129 -14.38262 -13.99647 -13.89560 -13.49138 -12.91922 -12.56261 -12.48425 -12.13917 -11.76064 -11.72224 -11.51454 -11.41292 -11.18282 -11.13214 -10.80206 -10.59784 -10.50168 -10.40452 -10.25869 -10.01006 -9.98665 -9.52680 -9.21307 -8.92296 -8.20641 -7.56263 -5.83037 -3.80469 3.43812 3.49956 3.56429 4.00011 4.19140 4.53427 4.61984 4.67609 4.89725 5.02793 5.05333 5.13969 5.29242 5.32527 5.40912 5.50534 5.54596 5.63952 5.71226 5.75819 5.83442 5.87946 5.93106 6.00698 6.05307 6.07457 6.16988 6.33665 6.45635 6.54653 6.64094 7.02173 7.04956 7.47682 7.58185 7.72587 8.04486 8.09810 8.20401 8.64931 9.25265 9.81077 11.29070 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.006607 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.143529 B = 4237.001223 C = 5226.963921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.064 0.936 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.662 5.662 14 C 0.073 3.927 15 C -0.081 4.081 16 C -0.108 4.108 17 C 0.074 3.926 18 O -0.574 6.574 19 C -0.151 4.151 20 C 0.044 3.956 21 O -0.373 6.373 22 C 0.058 3.942 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.256 0.744 29 H 0.331 0.669 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.376 0.624 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 3.550 -17.642 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.293 5.293 14 C -0.057 4.057 15 C -0.082 4.082 16 C -0.145 4.145 17 C -0.004 4.004 18 O -0.380 6.380 19 C -0.189 4.189 20 C -0.033 4.033 21 O -0.291 6.291 22 C -0.019 4.019 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.858 3.332 -17.064 18.052 hybrid contribution -0.725 0.345 -0.359 0.880 sum -5.583 3.677 -17.423 18.662 Atomic orbital electron populations 1.22557 0.99682 1.01116 1.00463 1.21790 0.89724 0.98176 0.92249 0.91782 1.19108 0.96279 0.95345 0.89671 1.21147 0.91842 1.32741 1.06770 0.92280 1.24996 0.97915 0.95932 0.96076 1.69964 1.35166 1.37078 1.12398 0.86670 0.86552 0.77132 0.78106 1.21096 1.21618 1.19759 1.60519 1.57746 1.08576 1.02456 1.21993 0.97460 0.95984 0.90263 1.21877 0.96838 0.94732 0.94723 1.21507 0.92997 0.97585 1.02426 1.22322 0.92288 0.87297 0.98455 1.86488 1.27203 1.33688 1.90577 1.23127 0.97382 1.00332 0.98046 1.23341 0.91663 1.00588 0.87737 1.89176 1.52301 1.53611 1.34051 1.23595 0.86917 0.88978 1.02380 0.94666 0.93071 0.92484 0.96574 0.96542 0.93404 0.85078 0.90760 0.96183 0.91320 0.89827 0.93456 0.93881 0.77737 0.90641 0.90657 0.92822 0.89647 0.85931 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 9.16 37.16 0.34 -2.62 16 2 C 0.09 1.78 2.53 -67.71 -0.17 1.60 16 3 H 0.06 1.31 7.72 -51.93 -0.40 0.91 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.49 -13.70 8.84 -34.44 -0.30 -14.00 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -11.77 5.14 -106.73 -0.55 -12.32 16 14 C 0.07 1.07 3.95 -3.82 -0.02 1.06 16 15 C -0.08 -1.05 0.56 -152.94 -0.09 -1.13 16 16 C -0.11 -1.31 4.12 -26.73 -0.11 -1.42 16 17 C 0.07 0.79 6.51 37.16 0.24 1.03 16 18 O -0.57 -6.37 13.66 -35.23 -0.48 -6.85 16 19 C -0.15 -1.61 5.87 -25.16 -0.15 -1.76 16 20 C 0.04 0.51 7.63 37.93 0.29 0.80 16 21 O -0.37 -6.02 11.65 -35.23 -0.41 -6.43 16 22 C 0.06 0.89 6.65 37.93 0.25 1.15 16 23 H 0.03 0.50 7.56 -51.93 -0.39 0.11 16 24 H 0.05 0.83 8.13 -51.92 -0.42 0.41 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.33 5.62 6.81 -39.29 -0.27 5.35 16 30 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 31 H 0.02 0.27 5.95 -51.93 -0.31 -0.04 16 32 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.08 1.16 6.76 -51.93 -0.35 0.81 16 34 H 0.05 0.52 6.46 -51.93 -0.34 0.18 16 35 H 0.04 0.39 6.69 -51.93 -0.35 0.05 16 36 H 0.38 2.42 9.12 45.56 0.42 2.84 16 37 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 38 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.12 2.30 7.34 -51.93 -0.38 1.92 16 42 H 0.05 0.75 7.85 -51.92 -0.41 0.34 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -31.98 328.03 -7.15 -39.13 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.43 Total: 4.22 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.06 Total: -13.22 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.19 Total: -39.24 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.89 Total: -13.27 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.98 -7.15 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309803527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.761 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds