Wall clock time and date at job start Mon Mar 30 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46917 * 2 1 4 4 C 1.52996 * 109.47335 * 239.99552 * 2 1 3 5 5 C 1.50700 * 109.47064 * 174.99805 * 4 2 1 6 6 H 1.07995 * 120.00345 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99644 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99822 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00422 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47085 * 89.99525 * 9 7 5 11 11 H 1.48494 * 109.47304 * 209.99744 * 9 7 5 12 12 H 1.48495 * 109.46988 * 329.99948 * 9 7 5 13 13 N 1.46898 * 109.46964 * 119.99517 * 2 1 3 14 14 C 1.46900 * 111.00090 * 275.00043 * 13 2 1 15 15 C 1.53001 * 109.47164 * 179.97438 * 14 13 2 16 16 C 1.53005 * 110.45377 * 55.23181 * 15 14 13 17 17 C 1.53004 * 109.47184 * 57.78908 * 16 15 14 18 18 O 1.42898 * 109.47056 * 175.59968 * 17 16 15 19 19 C 1.54510 * 110.51272 * 177.83891 * 15 14 13 20 20 C 1.54473 * 104.06353 * 118.78283 * 19 15 14 21 21 O 1.44424 * 104.80553 * 23.97754 * 20 19 15 22 22 C 1.44427 * 105.27361 * 319.49192 * 21 20 19 23 23 H 1.09000 * 109.46880 * 60.00412 * 1 2 3 24 24 H 1.09002 * 109.47329 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46936 * 300.00394 * 1 2 3 26 26 H 1.09001 * 109.47493 * 295.00290 * 4 2 1 27 27 H 1.09002 * 109.46950 * 54.99867 * 4 2 1 28 28 H 0.97004 * 119.99981 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00167 * 38.95303 * 13 2 1 30 30 H 1.09001 * 109.47033 * 60.00190 * 14 13 2 31 31 H 1.08998 * 109.47313 * 300.00103 * 14 13 2 32 32 H 1.08994 * 109.47227 * 297.78266 * 16 15 14 33 33 H 1.09008 * 109.46826 * 177.78399 * 16 15 14 34 34 H 1.08999 * 109.47602 * 55.59381 * 17 16 15 35 35 H 1.09003 * 109.46439 * 295.59567 * 17 16 15 36 36 H 0.96701 * 113.99596 * 179.97438 * 18 17 16 37 37 H 1.09000 * 110.50951 * 237.43052 * 19 15 14 38 38 H 1.09001 * 110.51147 * 0.13496 * 19 15 14 39 39 H 1.09003 * 110.36893 * 142.81070 * 20 19 15 40 40 H 1.08994 * 110.37301 * 265.14413 * 20 19 15 41 41 H 1.08997 * 110.36829 * 281.67523 * 22 21 20 42 42 H 1.08999 * 110.37187 * 159.34424 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2304 -1.1936 -2.3576 8 7 5.5411 -1.1003 -2.4133 9 14 3.3016 -2.1089 -3.6951 10 1 2.9408 -1.1641 -4.7825 11 1 4.1600 -3.1897 -4.2430 12 1 2.0655 -2.7005 -3.1231 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2228 2.3469 15 6 2.5949 -0.5329 3.5745 16 6 3.9400 -1.1960 3.2712 17 6 4.9462 -0.1305 2.8313 18 8 6.2285 -0.7336 2.6467 19 6 2.7218 0.4209 4.7835 20 6 1.7521 -0.1696 5.8309 21 8 1.6316 -1.5646 5.4771 22 6 1.5635 -1.5868 4.0346 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7517 -1.7716 -1.2055 27 1 1.6054 -0.2619 -2.1369 28 1 6.0256 -1.5078 -3.1483 29 1 1.4495 -1.4978 1.4102 30 1 1.0870 0.6165 2.5525 31 1 2.7588 1.0464 2.1182 32 1 3.8129 -1.9273 2.4731 33 1 4.3088 -1.6961 4.1669 34 1 5.0149 0.6425 3.5966 35 1 4.6160 0.3155 1.8930 36 1 6.9171 -0.1153 2.3665 37 1 3.7429 0.4201 5.1650 38 1 2.4171 1.4303 4.5071 39 1 2.1678 -0.0668 6.8333 40 1 0.7816 0.3226 5.7695 41 1 0.5640 -1.3120 3.6977 42 1 1.8343 -2.5729 3.6571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309803529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:13 Heat of formation + Delta-G solvation = -108.312466 kcal Electronic energy + Delta-G solvation = -20666.599623 eV Core-core repulsion = 17646.113824 eV Total energy + Delta-G solvation = -3020.485799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06132 -37.01590 -36.27588 -34.15366 -32.35723 -30.40353 -29.65368 -27.92735 -27.66128 -24.66544 -22.87294 -22.61559 -22.21963 -19.77466 -18.79356 -17.06649 -16.55135 -16.09232 -15.89434 -15.31296 -14.79404 -14.67992 -14.41584 -14.11439 -13.55874 -13.19957 -12.85702 -12.61699 -12.54339 -12.31784 -12.16162 -11.84201 -11.71672 -11.45149 -11.18614 -11.06525 -10.74684 -10.61038 -10.56575 -10.29448 -10.16487 -9.71666 -9.70108 -9.56735 -9.33106 -9.00516 -8.38920 -7.65209 -5.87616 -3.81052 3.37504 3.45941 3.48485 3.94414 4.34532 4.57416 4.63250 4.74719 4.80701 5.04577 5.19694 5.23463 5.36553 5.47560 5.55383 5.59501 5.60527 5.63683 5.71469 5.76621 5.77063 5.87197 5.88250 5.91173 6.02335 6.17145 6.21238 6.34869 6.46148 6.58749 6.72825 6.79778 6.80771 7.15416 7.32268 7.77817 7.91684 8.05164 8.13821 8.74695 9.22987 9.75721 11.26310 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.006386 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.435717 B = 4383.789794 C = 5216.466803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.486 4.486 6 H 0.076 0.924 7 C 0.061 3.939 8 N -0.907 5.907 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.658 5.658 14 C 0.072 3.928 15 C -0.082 4.082 16 C -0.090 4.090 17 C 0.081 3.919 18 O -0.573 6.573 19 C -0.150 4.150 20 C 0.045 3.955 21 O -0.376 6.376 22 C 0.054 3.946 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.063 0.937 36 H 0.376 0.624 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 4.044 13.592 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.525 4.525 6 H 0.094 0.906 7 C -0.138 4.138 8 N -0.547 5.547 9 Si 0.702 3.298 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.288 5.288 14 C -0.057 4.057 15 C -0.083 4.083 16 C -0.128 4.128 17 C 0.003 3.997 18 O -0.378 6.378 19 C -0.188 4.188 20 C -0.031 4.031 21 O -0.295 6.295 22 C -0.023 4.023 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.222 0.778 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.380 3.352 13.640 15.867 hybrid contribution -1.096 0.360 -0.947 1.493 sum -8.476 3.712 12.693 15.708 Atomic orbital electron populations 1.22599 0.99522 1.01235 1.00868 1.21549 0.89635 0.98218 0.91657 0.91306 1.19603 0.97912 0.95378 0.91282 1.20981 0.89367 1.33756 1.08354 0.90598 1.25001 0.94661 0.96290 0.97869 1.69911 1.06375 1.46194 1.32251 0.86897 0.80222 0.80039 0.82685 1.20787 1.21702 1.19363 1.60482 1.57493 1.08446 1.02354 1.22036 0.98184 0.95661 0.89861 1.21914 0.96483 0.95302 0.94615 1.21303 0.91201 0.98451 1.01803 1.22182 0.83471 0.94580 0.99425 1.86435 1.19832 1.40192 1.91304 1.23113 1.00988 0.99468 0.95251 1.23376 0.98216 0.82580 0.98971 1.89112 1.94798 1.24315 1.21278 1.23548 0.97490 1.00465 0.80779 0.92473 0.93033 0.94106 0.96635 0.97129 0.93168 0.85304 0.96149 0.90724 0.89115 0.92342 0.95492 0.91920 0.77789 0.90195 0.90491 0.89416 0.92658 0.92526 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.16 37.16 0.34 -2.40 16 2 C 0.10 1.82 2.53 -67.72 -0.17 1.65 16 3 H 0.07 1.32 7.80 -51.93 -0.40 0.91 16 4 C 0.00 -0.09 3.72 -27.89 -0.10 -0.20 16 5 C -0.49 -13.51 9.39 -34.44 -0.32 -13.83 16 6 H 0.08 2.28 7.99 -52.49 -0.42 1.87 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -28.15 13.96 55.43 0.77 -27.37 16 9 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 N -0.66 -11.13 5.12 -106.73 -0.55 -11.68 16 14 C 0.07 1.01 3.66 -3.82 -0.01 1.00 16 15 C -0.08 -1.07 0.56 -152.94 -0.09 -1.15 16 16 C -0.09 -1.41 4.17 -26.73 -0.11 -1.52 16 17 C 0.08 1.32 6.39 37.16 0.24 1.55 16 18 O -0.57 -10.29 13.66 -35.23 -0.48 -10.77 16 19 C -0.15 -1.63 5.81 -25.17 -0.15 -1.78 16 20 C 0.05 0.48 7.63 37.93 0.29 0.77 16 21 O -0.38 -5.06 11.65 -35.23 -0.41 -5.47 16 22 C 0.05 0.68 5.95 37.93 0.23 0.91 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.75 8.13 -51.93 -0.42 0.32 16 25 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 26 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.33 5.18 7.72 -39.29 -0.30 4.87 16 30 H 0.02 0.26 7.33 -51.93 -0.38 -0.12 16 31 H 0.07 1.12 6.78 -51.93 -0.35 0.76 16 32 H 0.09 1.67 7.63 -51.93 -0.40 1.27 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.03 0.37 6.73 -51.93 -0.35 0.02 16 35 H 0.06 1.17 6.84 -51.93 -0.35 0.81 16 36 H 0.38 5.26 9.12 45.56 0.42 5.67 16 37 H 0.08 0.87 6.79 -51.93 -0.35 0.52 16 38 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.66 7.80 -51.93 -0.41 0.26 16 42 H 0.10 1.24 7.87 -51.93 -0.41 0.83 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -32.17 326.43 -6.92 -39.10 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.55 Total: 7.29 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 0.04 Total: -13.32 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.23 Total: -39.05 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.89 Total: -16.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.17 -6.92 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309803529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.217 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds