Wall clock time and date at job start Mon Mar 30 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 N 1.46901 * 109.47083 * 240.00204 * 2 1 3 14 14 C 1.46897 * 111.00370 * 84.99725 * 13 2 1 15 15 C 1.52995 * 109.47394 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47067 * 305.00137 * 15 14 13 17 17 O 1.42898 * 109.47292 * 65.00042 * 15 14 13 18 18 C 1.53001 * 109.47108 * 185.00225 * 15 14 13 19 19 O 1.42898 * 109.47077 * 175.00062 * 18 15 14 20 20 C 1.42903 * 114.00054 * 179.97438 * 19 18 15 21 21 C 1.53000 * 109.46984 * 179.97438 * 20 19 18 22 22 C 1.53004 * 117.49825 * 243.74634 * 21 20 19 23 23 C 1.53002 * 117.49716 * 175.09153 * 21 20 19 24 24 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 26 26 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 27 27 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 28 28 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.00901 * 110.99961 * 321.04070 * 13 2 1 31 31 H 1.09006 * 109.47009 * 300.00297 * 14 13 2 32 32 H 1.08998 * 109.46949 * 59.99711 * 14 13 2 33 33 H 0.96701 * 114.00161 * 60.00223 * 17 15 14 34 34 H 1.09005 * 109.46885 * 294.99741 * 18 15 14 35 35 H 1.08998 * 109.47374 * 54.99423 * 18 15 14 36 36 H 1.08994 * 109.47169 * 300.00163 * 20 19 18 37 37 H 1.09007 * 109.46775 * 59.99890 * 20 19 18 38 38 H 1.08999 * 115.55086 * 29.41829 * 21 20 19 39 39 H 1.09000 * 117.49765 * 0.02562 * 22 21 20 40 40 H 1.08994 * 117.49912 * 145.02096 * 22 21 20 41 41 H 1.08997 * 117.49708 * 214.98129 * 23 21 20 42 42 H 1.09005 * 117.49895 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.5839 -0.2927 1.2649 11 1 6.4873 -0.3666 3.6872 12 1 6.6856 -2.4233 2.4178 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5949 -0.5332 -3.5745 16 1 3.5506 -1.0020 -3.3397 17 8 1.6492 -1.5386 -3.9441 18 6 2.7788 0.4457 -4.7360 19 8 3.3666 -0.2367 -5.8454 20 6 3.5817 0.5919 -6.9897 21 6 4.2118 -0.2387 -8.1095 22 6 5.6202 0.1457 -8.5673 23 6 4.4160 0.4419 -9.4646 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 2.6102 -1.9112 3.2555 30 1 1.4496 -1.4979 -1.4100 31 1 1.0870 0.6163 -2.5525 32 1 2.7587 1.0462 -2.1183 33 1 0.7741 -1.1926 -4.1669 34 1 1.8091 0.8479 -5.0291 35 1 3.4311 1.2613 -4.4240 36 1 2.6285 0.9968 -7.3294 37 1 4.2506 1.4108 -6.7247 38 1 3.9533 -1.2975 -8.1120 39 1 6.0980 0.9901 -8.0704 40 1 6.2881 -0.6602 -8.8713 41 1 4.2920 -0.1694 -10.3585 42 1 4.1010 1.4812 -9.5584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309806991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:37 Heat of formation + Delta-G solvation = -114.387123 kcal Electronic energy + Delta-G solvation = -19100.011114 eV Core-core repulsion = 16079.261899 eV Total energy + Delta-G solvation = -3020.749216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93958 -38.90246 -37.76261 -36.88859 -35.02734 -32.68455 -30.39492 -28.79680 -27.85117 -25.42991 -24.72300 -23.27441 -22.73405 -21.70048 -21.44653 -18.91439 -18.10223 -17.66281 -17.32338 -16.44630 -16.25996 -16.03444 -15.68019 -15.42570 -15.31452 -15.04628 -14.43951 -14.37919 -13.63750 -13.47587 -13.33968 -13.26346 -12.99520 -12.72699 -12.51446 -12.41009 -12.18816 -12.15785 -11.91238 -11.77561 -11.56548 -11.40667 -11.22726 -10.86027 -10.59820 -10.48084 -10.46673 -9.07393 -8.56352 -6.21458 1.53046 1.63543 1.79635 2.37271 2.62180 2.89119 3.23972 3.37120 3.50272 3.82799 3.93893 3.99713 4.04636 4.08031 4.11375 4.24739 4.30866 4.32736 4.42140 4.42397 4.49498 4.54466 4.67748 4.70713 4.75558 4.82632 4.99241 5.05483 5.10355 5.17662 5.20859 5.22578 5.24015 5.46941 6.12873 6.21121 6.32099 6.37405 6.61997 6.75505 6.84681 7.55925 8.84844 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003768 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.752274 B = 7429.131752 C = 8482.083335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 H 0.061 0.939 4 C 0.019 3.981 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.051 4.051 8 N -0.951 5.951 9 Si 1.120 2.880 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.041 3.959 15 C 0.119 3.881 16 H 0.083 0.917 17 O -0.567 6.567 18 C 0.040 3.960 19 O -0.402 6.402 20 C 0.089 3.911 21 C -0.174 4.174 22 C -0.183 4.183 23 C -0.158 4.158 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.071 0.929 27 H -0.017 1.017 28 H -0.011 1.011 29 H 0.252 0.748 30 H 0.339 0.661 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.383 0.617 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 8.701 -24.339 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 H 0.079 0.921 4 C -0.019 4.019 5 C -0.613 4.613 6 H 0.066 0.934 7 C -0.246 4.246 8 N -0.591 5.591 9 Si 0.943 3.057 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.315 5.315 14 C -0.088 4.088 15 C 0.059 3.941 16 H 0.101 0.899 17 O -0.373 6.373 18 C -0.038 4.038 19 O -0.322 6.322 20 C 0.013 3.987 21 C -0.192 4.192 22 C -0.220 4.220 23 C -0.195 4.195 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.001 0.999 28 H 0.007 0.993 29 H 0.062 0.938 30 H 0.158 0.842 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.631 7.794 -23.192 24.475 hybrid contribution -2.856 0.804 -0.689 3.046 sum -3.487 8.598 -23.881 25.620 Atomic orbital electron populations 1.22425 0.96377 1.01784 1.02288 1.21333 0.92199 0.96678 0.90220 0.92090 1.19197 0.96024 0.93865 0.92783 1.22328 0.93306 1.36244 1.09455 0.93397 1.27303 1.11031 0.93410 0.92839 1.70861 1.09420 1.42720 1.36053 0.82882 0.69711 0.76770 0.76316 1.19732 1.20522 1.21069 1.60217 1.58767 1.09519 1.02958 1.22489 1.00429 0.95518 0.90402 1.21791 0.93005 0.88707 0.90594 0.89939 1.86644 1.24900 1.35902 1.89880 1.23169 0.98825 0.94967 0.86796 1.87929 1.82845 1.37972 1.23462 1.22149 0.99578 0.92252 0.84707 1.22148 1.00855 1.00431 0.95768 1.23169 0.90951 1.03831 1.04008 1.23078 1.01242 1.02202 0.92936 0.93046 0.92446 0.91022 0.99854 0.99281 0.93815 0.84189 0.93017 0.90735 0.76783 0.90705 0.91445 0.91739 0.92572 0.88287 0.88308 0.88346 0.87415 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 9.16 71.98 0.66 -4.69 16 2 C 0.11 4.23 2.53 44.92 0.11 4.35 16 3 H 0.06 2.47 7.80 -2.39 -0.02 2.46 16 4 C 0.02 0.99 3.96 29.85 0.12 1.11 16 5 C -0.57 -33.83 8.84 25.60 0.23 -33.61 16 6 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 7 C -0.05 -3.06 5.46 84.66 0.46 -2.60 16 8 N -0.95 -61.44 13.65 21.45 0.29 -61.15 16 9 Si 1.12 53.44 29.90 68.60 2.05 55.49 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 N -0.68 -25.54 5.96 -491.57 -2.93 -28.48 16 14 C 0.04 1.14 5.16 86.30 0.44 1.59 16 15 C 0.12 3.18 3.49 30.59 0.11 3.29 16 16 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 17 O -0.57 -15.28 12.82 -144.34 -1.85 -17.13 16 18 C 0.04 0.83 5.57 71.98 0.40 1.23 16 19 O -0.40 -10.01 10.31 -144.34 -1.49 -11.50 16 20 C 0.09 1.62 6.22 71.98 0.45 2.07 16 21 C -0.17 -3.03 6.05 -10.79 -0.07 -3.10 16 22 C -0.18 -2.69 10.18 30.62 0.31 -2.38 16 23 C -0.16 -1.91 10.25 30.62 0.31 -1.60 16 24 H 0.05 1.62 8.13 -2.38 -0.02 1.60 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.79 7.45 -2.39 -0.02 1.78 16 27 H -0.02 -0.97 8.00 -2.39 -0.02 -0.99 16 28 H -0.01 -0.61 8.01 -2.39 -0.02 -0.63 16 29 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 30 H 0.34 12.39 8.03 -89.69 -0.72 11.67 16 31 H 0.05 1.14 7.44 -2.38 -0.02 1.13 16 32 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 33 H 0.38 6.83 9.05 -74.06 -0.67 6.16 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.91 7.87 -2.38 -0.02 0.89 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.10 1.37 8.03 -2.39 -0.02 1.35 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -72.96 346.97 -0.69 -73.65 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.31 Total: 23.45 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.54 Total: -34.33 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -2.64 Total: -89.63 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -3.34 Total: -28.63 kcal Atomic # 14 Polarization: 53.44 SS G_CDS: 2.05 Total: 55.49 kcal Total: -72.96 -0.69 -73.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309806991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.741 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds