Wall clock time and date at job start Mon Mar 30 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99980 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46754 * 90.00399 * 9 7 5 11 11 H 1.48503 * 109.46996 * 209.99720 * 9 7 5 12 12 H 1.48501 * 109.47356 * 330.00401 * 9 7 5 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 H 1.09010 * 109.46831 * 304.99917 * 15 14 13 17 17 O 1.42895 * 109.47420 * 64.99981 * 15 14 13 18 18 C 1.53001 * 109.47389 * 185.00326 * 15 14 13 19 19 O 1.42903 * 109.47291 * 175.00114 * 18 15 14 20 20 C 1.42897 * 114.00235 * 179.97438 * 19 18 15 21 21 C 1.53000 * 109.47270 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.49954 * 243.74445 * 21 20 19 23 23 C 1.53000 * 117.49897 * 175.08741 * 21 20 19 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 28 28 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 29 29 H 0.97004 * 119.99775 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 31 31 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 32 32 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 33 33 H 0.96695 * 114.00017 * 59.99954 * 17 15 14 34 34 H 1.08999 * 109.46933 * 294.99628 * 18 15 14 35 35 H 1.09002 * 109.47377 * 54.99648 * 18 15 14 36 36 H 1.08999 * 109.46937 * 299.99935 * 20 19 18 37 37 H 1.09008 * 109.47171 * 59.99303 * 20 19 18 38 38 H 1.08996 * 115.54811 * 29.41237 * 21 20 19 39 39 H 1.09000 * 117.49870 * 0.02562 * 22 21 20 40 40 H 1.08998 * 117.50001 * 145.01644 * 22 21 20 41 41 H 1.08992 * 117.49572 * 214.98065 * 23 21 20 42 42 H 1.09005 * 117.49564 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 5.5412 -1.1004 -2.4133 9 14 3.3016 -2.1080 -3.6957 10 1 2.9400 -1.1628 -4.7825 11 1 4.1605 -3.1880 -4.2445 12 1 2.0660 -2.7005 -3.1235 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 1 1.9707 -1.4082 3.7501 17 8 3.9444 -0.9484 3.3480 18 6 2.5438 0.3852 4.7970 19 8 2.9126 -0.3534 5.9634 20 6 2.8967 0.4157 7.1677 21 6 3.3051 -0.4718 8.3451 22 6 2.2641 -0.7172 9.4392 23 6 3.4614 0.1965 9.7126 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.7517 -1.7715 -1.2055 28 1 1.6055 -0.2618 -2.1369 29 1 6.0256 -1.5065 -3.1491 30 1 2.9173 -1.1205 1.0288 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5525 33 1 4.5584 -0.2196 3.1839 34 1 3.2368 1.2150 4.6583 35 1 1.5321 0.7730 4.9173 36 1 3.5973 1.2459 7.0778 37 1 1.8925 0.8045 7.3373 38 1 3.9841 -1.2896 8.1040 39 1 1.2881 -0.2467 9.3199 40 1 2.2585 -1.6963 9.9181 41 1 4.2430 -0.1819 10.3712 42 1 3.2736 1.2685 9.7732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309807002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:45 Heat of formation + Delta-G solvation = -87.271662 kcal Electronic energy + Delta-G solvation = -19103.873212 eV Core-core repulsion = 16084.299811 eV Total energy + Delta-G solvation = -3019.573401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90442 -37.80354 -36.55197 -35.64021 -32.67929 -31.35663 -29.29060 -27.87266 -26.97358 -24.23948 -22.70082 -22.47686 -21.47231 -20.76167 -19.37245 -17.11865 -16.80351 -16.62696 -16.29534 -15.48061 -15.32318 -14.67641 -14.57319 -14.33645 -13.93000 -13.54145 -12.79743 -12.73522 -12.45366 -12.26469 -11.97276 -11.84819 -11.81764 -11.52281 -11.34527 -11.21457 -10.77384 -10.70365 -10.60341 -10.49997 -10.44840 -9.81894 -9.72352 -9.65001 -9.43243 -9.19349 -8.54465 -7.73026 -6.05492 -4.03873 3.22647 3.31872 3.39937 3.44965 3.59527 4.42815 4.45873 4.58017 4.59509 4.66997 4.92161 5.02502 5.09000 5.12078 5.27278 5.30412 5.33019 5.33647 5.41606 5.42224 5.56850 5.58788 5.75806 5.78052 5.90548 5.93524 6.06082 6.17901 6.27835 6.41402 6.70547 6.77542 7.07228 7.15965 7.30611 7.76204 7.87216 7.92611 8.25934 8.48855 8.95789 9.57200 11.07514 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035251 B = 0.003344 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.121383 B = 8371.325338 C = 8886.835232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.018 4.018 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.679 5.679 14 C 0.033 3.967 15 C 0.112 3.888 16 H 0.112 0.888 17 O -0.547 6.547 18 C 0.033 3.967 19 O -0.373 6.373 20 C 0.091 3.909 21 C -0.152 4.152 22 C -0.178 4.178 23 C -0.176 4.176 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.263 0.737 30 H 0.366 0.634 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.371 0.629 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 4.846 19.484 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.315 5.315 14 C -0.098 4.098 15 C 0.053 3.947 16 H 0.129 0.871 17 O -0.351 6.351 18 C -0.045 4.045 19 O -0.292 6.292 20 C 0.015 3.985 21 C -0.170 4.170 22 C -0.215 4.215 23 C -0.213 4.213 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.189 0.811 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.218 0.782 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.999 3.750 19.617 21.515 hybrid contribution 0.544 1.057 -1.040 1.579 sum -7.455 4.807 18.577 20.586 Atomic orbital electron populations 1.21840 0.96676 1.01434 0.99704 1.21401 0.93194 0.95962 0.90814 0.94841 1.19772 0.97051 0.96321 0.92369 1.21056 0.89830 1.35376 1.09838 0.91309 1.25008 0.94700 0.95637 0.97923 1.69917 1.06581 1.45237 1.32230 0.86757 0.80347 0.79906 0.82146 1.20465 1.21427 1.18834 1.60514 1.35917 1.31240 1.03813 1.22498 1.00301 0.94596 0.92396 1.21959 0.84731 0.98053 0.89999 0.87059 1.86672 1.17810 1.37088 1.93528 1.23285 0.99386 0.95114 0.86686 1.87968 1.89817 1.36941 1.14476 1.21990 0.99317 0.93044 0.84177 1.22148 1.03383 1.02625 0.88815 1.23076 0.94301 1.01250 1.02869 1.22981 1.01078 0.98997 0.98220 0.93288 0.92562 0.94210 0.95570 0.96510 0.92734 0.81101 0.95339 0.91078 0.78210 0.93135 0.92590 0.93078 0.93444 0.86668 0.88734 0.88581 0.88400 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.16 0.35 -1.97 16 2 C 0.10 1.92 2.59 -67.71 -0.18 1.74 16 3 H 0.03 0.69 7.80 -51.93 -0.40 0.28 16 4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.57 8.67 -34.44 -0.30 -14.87 16 6 H 0.07 2.04 7.73 -52.48 -0.41 1.64 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.68 -12.98 6.31 -106.72 -0.67 -13.65 16 14 C 0.03 0.50 5.16 -3.83 -0.02 0.48 16 15 C 0.11 1.62 3.49 -26.73 -0.09 1.52 16 16 H 0.11 1.73 8.14 -51.92 -0.42 1.31 16 17 O -0.55 -8.99 12.82 -40.09 -0.51 -9.51 16 18 C 0.03 0.39 5.57 37.16 0.21 0.59 16 19 O -0.37 -4.93 10.31 -40.09 -0.41 -5.35 16 20 C 0.09 0.92 6.22 37.16 0.23 1.16 16 21 C -0.15 -1.42 6.05 -90.62 -0.55 -1.97 16 22 C -0.18 -1.40 10.18 -26.70 -0.27 -1.67 16 23 C -0.18 -1.28 10.25 -26.70 -0.27 -1.55 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.37 8.01 6.77 -39.29 -0.27 7.74 16 31 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.07 0.97 7.44 -51.93 -0.39 0.59 16 33 H 0.37 5.03 9.04 45.56 0.41 5.45 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.42 7.88 -51.92 -0.41 0.02 16 38 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -31.33 343.03 -8.26 -39.60 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.84 Total: 8.54 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.09 Total: -15.17 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.10 Total: -40.47 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.93 Total: -14.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.33 -8.26 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309807002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.676 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds