Wall clock time and date at job start Mon Mar 30 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.61495 * 301.45041 * 4 3 2 6 6 N 1.46899 * 109.47422 * 304.16543 * 5 4 3 7 7 C 1.46897 * 111.00193 * 174.56040 * 6 5 4 8 8 H 1.09003 * 109.47143 * 325.00052 * 7 6 5 9 9 C 1.52998 * 109.46976 * 85.00403 * 7 6 5 10 10 C 1.50701 * 109.47214 * 205.00602 * 7 6 5 11 11 H 1.07997 * 120.00115 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00016 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99759 * 179.97438 * 12 10 7 14 14 Si 1.86796 * 119.99958 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.46834 * 90.00402 * 14 12 10 16 16 H 1.48502 * 109.47086 * 210.00095 * 14 12 10 17 17 H 1.48493 * 109.47472 * 330.00789 * 14 12 10 18 18 C 1.53196 * 109.53576 * 61.66911 * 4 3 2 19 19 C 1.53089 * 109.15569 * 62.89507 * 18 4 3 20 20 O 1.42897 * 109.42287 * 57.60044 * 19 18 4 21 21 C 1.42897 * 114.10026 * 298.83900 * 20 19 18 22 22 C 1.53093 * 109.41777 * 61.16011 * 21 20 19 23 23 H 1.09000 * 109.46615 * 299.99370 * 1 2 3 24 24 H 1.08995 * 109.47281 * 59.99445 * 1 2 3 25 25 H 1.08996 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47170 * 60.00475 * 3 2 1 27 27 H 1.09002 * 109.47645 * 300.00586 * 3 2 1 28 28 H 1.08999 * 109.47057 * 64.17068 * 5 4 3 29 29 H 1.08999 * 109.47206 * 184.16791 * 5 4 3 30 30 H 1.00900 * 111.00130 * 298.51940 * 6 5 4 31 31 H 1.09001 * 109.47191 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47252 * 299.99507 * 9 7 6 33 33 H 1.08994 * 109.47463 * 60.00132 * 9 7 6 34 34 H 0.97005 * 119.99838 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.53962 * 302.98393 * 18 4 3 36 36 H 1.09003 * 109.52083 * 182.79354 * 18 4 3 37 37 H 1.08997 * 109.48021 * 297.61403 * 19 18 4 38 38 H 1.09006 * 109.48060 * 177.58936 * 19 18 4 39 39 H 1.09001 * 109.48233 * 181.13974 * 21 20 19 40 40 H 1.08998 * 109.47913 * 301.16463 * 21 20 19 41 41 H 1.09002 * 109.52361 * 62.29086 * 22 21 20 42 42 H 1.08995 * 109.52691 * 182.42880 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9886 0.3943 1.2285 6 7 3.4701 1.0377 2.4430 7 6 3.7761 0.2359 3.6352 8 1 3.7281 -0.8234 3.3828 9 6 5.1817 0.5784 4.1331 10 6 2.7719 0.5406 4.7168 11 1 1.9853 1.2583 4.5367 12 6 2.8580 -0.0963 5.9367 13 7 1.9820 0.1699 6.8807 14 14 4.2190 -1.3372 6.2484 15 1 5.4052 -0.6408 6.8081 16 1 3.7442 -2.3604 7.2144 17 1 4.5896 -1.9969 4.9707 18 6 3.9916 0.4614 -1.2718 19 6 3.6030 1.2988 -2.4931 20 8 4.1915 2.5965 -2.3861 21 6 3.7651 3.3381 -1.2415 22 6 4.1603 2.5829 0.0303 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8465 -0.8899 28 1 3.6072 -0.6249 1.1660 29 1 5.0778 0.3729 1.2654 30 1 3.8289 1.9761 2.5364 31 1 5.4090 -0.0168 5.0175 32 1 5.9081 0.3580 3.3508 33 1 5.2297 1.6377 4.3855 34 1 2.0423 -0.2784 7.7388 35 1 3.5079 -0.5137 -1.3299 36 1 5.0736 0.3314 -1.2486 37 1 2.5181 1.3942 -2.5381 38 1 3.9628 0.8099 -3.3984 39 1 4.2419 4.3183 -1.2450 40 1 2.6824 3.4603 -1.2702 41 1 5.2457 2.4958 0.0798 42 1 3.7981 3.1254 0.9035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309948814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:01 Heat of formation + Delta-G solvation = -91.637915 kcal Electronic energy + Delta-G solvation = -20852.403537 eV Core-core repulsion = 17832.640801 eV Total energy + Delta-G solvation = -3019.762736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11963 -37.33770 -36.35114 -34.25768 -32.04432 -31.13595 -29.38085 -27.51678 -25.78143 -25.12894 -24.82108 -23.52327 -22.05896 -20.12237 -18.65150 -16.80623 -16.27165 -16.05907 -15.94370 -15.52113 -15.28128 -14.77490 -14.60429 -13.96890 -13.93102 -13.34101 -13.10467 -13.02850 -12.59582 -12.36556 -12.19760 -11.80949 -11.59704 -11.32469 -11.24236 -11.16815 -11.11663 -10.78907 -10.40024 -10.25857 -10.11524 -10.03220 -9.56248 -9.41432 -9.17481 -9.04109 -8.53519 -7.34729 -6.01986 -3.98433 3.27263 3.38232 3.40238 3.85648 4.04545 4.43189 4.75726 4.78086 4.89805 5.01014 5.17827 5.22376 5.28923 5.31987 5.42415 5.50793 5.62640 5.64966 5.67919 5.75731 5.86029 5.87391 5.93840 6.07635 6.10025 6.15403 6.21727 6.27543 6.31282 6.39508 6.54414 6.56810 6.79977 7.15949 7.16980 7.50215 7.76048 7.96112 8.38213 8.73593 9.08790 9.61504 11.11723 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.005833 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849272 B = 4799.400647 C = 5249.855409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.081 3.919 4 C -0.051 4.051 5 C 0.074 3.926 6 N -0.668 5.668 7 C 0.184 3.816 8 H 0.033 0.967 9 C -0.182 4.182 10 C -0.494 4.494 11 H 0.080 0.920 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.297 1.297 17 H -0.270 1.270 18 C -0.142 4.142 19 C 0.061 3.939 20 O -0.387 6.387 21 C 0.059 3.941 22 C -0.147 4.147 23 H 0.045 0.955 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.016 0.984 30 H 0.326 0.674 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.262 0.738 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 3.044 -17.201 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.004 3.996 4 C -0.052 4.052 5 C -0.056 4.056 6 N -0.297 5.297 7 C 0.075 3.925 8 H 0.051 0.949 9 C -0.241 4.241 10 C -0.532 4.532 11 H 0.098 0.902 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.717 3.283 15 H -0.209 1.209 16 H -0.225 1.225 17 H -0.195 1.195 18 C -0.180 4.180 19 C -0.015 4.015 20 O -0.306 6.306 21 C -0.017 4.017 22 C -0.185 4.185 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.143 0.857 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.994 2.635 -17.215 17.529 hybrid contribution 1.352 -0.448 0.774 1.621 sum 3.346 2.187 -16.440 16.919 Atomic orbital electron populations 1.22644 0.81670 1.02256 0.99520 1.87832 1.18992 1.27773 1.95266 1.22485 0.92432 0.84949 0.99731 1.20606 0.93969 0.95163 0.95468 1.21875 0.95544 0.98605 0.89580 1.60579 1.62591 1.04896 1.01624 1.19617 0.90901 0.93553 0.88414 0.94887 1.22860 1.00179 1.01469 0.99584 1.20976 1.12251 1.24787 0.95195 0.90195 1.24935 0.95900 0.96533 0.96111 1.69885 1.36082 1.43340 1.04916 0.86894 0.82092 0.81438 0.77878 1.20901 1.22503 1.19506 1.22168 1.01681 0.99996 0.94202 1.22589 0.97352 0.83442 0.98150 1.87890 1.69340 1.28345 1.44998 1.22614 0.99045 0.94849 0.85209 1.22241 1.01534 0.95884 0.98806 0.93646 0.95187 0.90148 0.91314 0.94917 0.90690 0.96585 0.85692 0.93761 0.95584 0.92841 0.92783 0.89975 0.91380 0.93166 0.89252 0.89050 0.93142 0.90797 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.59 16 2 O -0.38 -6.04 9.41 -35.23 -0.33 -6.37 16 3 C 0.08 1.16 4.03 37.16 0.15 1.31 16 4 C -0.05 -0.71 0.43 -154.32 -0.07 -0.78 16 5 C 0.07 1.26 4.25 -3.83 -0.02 1.24 16 6 N -0.67 -13.24 5.27 -107.96 -0.57 -13.81 16 7 C 0.18 4.35 2.17 -68.87 -0.15 4.20 16 8 H 0.03 0.83 6.77 -51.93 -0.35 0.48 16 9 C -0.18 -3.95 8.64 37.16 0.32 -3.63 16 10 C -0.49 -13.93 9.42 -34.44 -0.32 -14.25 16 11 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 12 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 14 Si 0.89 22.26 24.37 -169.99 -4.14 18.12 16 15 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 16 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 17 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 18 C -0.14 -1.77 4.83 -26.58 -0.13 -1.90 16 19 C 0.06 0.69 6.57 37.20 0.24 0.93 16 20 O -0.39 -4.86 10.76 -35.23 -0.38 -5.24 16 21 C 0.06 0.66 6.57 37.21 0.24 0.90 16 22 C -0.15 -1.80 4.60 -26.59 -0.12 -1.93 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.12 7.56 -51.93 -0.39 0.72 16 27 H 0.03 0.42 5.01 -51.93 -0.26 0.16 16 28 H 0.07 1.41 7.56 -51.93 -0.39 1.02 16 29 H 0.02 0.27 7.57 -51.93 -0.39 -0.13 16 30 H 0.33 6.03 6.99 -39.29 -0.27 5.75 16 31 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 32 H 0.03 0.49 7.56 -51.93 -0.39 0.10 16 33 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.05 7.66 -51.93 -0.40 0.65 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.56 6.57 -51.93 -0.34 0.21 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.54 6.63 -51.93 -0.34 0.19 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.02 6.96 -51.93 -0.36 0.66 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -30.97 313.84 -5.81 -36.78 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.06 Total: 3.33 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 1.17 Total: -10.48 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.20 Total: -40.87 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.71 Total: -11.61 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.97 -5.81 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309948814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.857 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds