Wall clock time and date at job start Mon Mar 30 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.61495 * 301.45041 * 4 3 2 6 6 N 1.46899 * 109.47422 * 304.16543 * 5 4 3 7 7 C 1.46897 * 111.00193 * 174.56040 * 6 5 4 8 8 H 1.09003 * 109.47143 * 325.00052 * 7 6 5 9 9 C 1.52998 * 109.46976 * 85.00403 * 7 6 5 10 10 C 1.50701 * 109.47214 * 205.00602 * 7 6 5 11 11 H 1.07997 * 120.00115 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00016 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99759 * 179.97438 * 12 10 7 14 14 Si 1.86796 * 119.99958 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.46834 * 90.00402 * 14 12 10 16 16 H 1.48502 * 109.47086 * 210.00095 * 14 12 10 17 17 H 1.48493 * 109.47472 * 330.00789 * 14 12 10 18 18 C 1.53196 * 109.53576 * 61.66911 * 4 3 2 19 19 C 1.53089 * 109.15569 * 62.89507 * 18 4 3 20 20 O 1.42897 * 109.42287 * 57.60044 * 19 18 4 21 21 C 1.42897 * 114.10026 * 298.83900 * 20 19 18 22 22 C 1.53093 * 109.41777 * 61.16011 * 21 20 19 23 23 H 1.09000 * 109.46615 * 299.99370 * 1 2 3 24 24 H 1.08995 * 109.47281 * 59.99445 * 1 2 3 25 25 H 1.08996 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47170 * 60.00475 * 3 2 1 27 27 H 1.09002 * 109.47645 * 300.00586 * 3 2 1 28 28 H 1.08999 * 109.47057 * 64.17068 * 5 4 3 29 29 H 1.08999 * 109.47206 * 184.16791 * 5 4 3 30 30 H 1.00900 * 111.00130 * 298.51940 * 6 5 4 31 31 H 1.09001 * 109.47191 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47252 * 299.99507 * 9 7 6 33 33 H 1.08994 * 109.47463 * 60.00132 * 9 7 6 34 34 H 0.97005 * 119.99838 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.53962 * 302.98393 * 18 4 3 36 36 H 1.09003 * 109.52083 * 182.79354 * 18 4 3 37 37 H 1.08997 * 109.48021 * 297.61403 * 19 18 4 38 38 H 1.09006 * 109.48060 * 177.58936 * 19 18 4 39 39 H 1.09001 * 109.48233 * 181.13974 * 21 20 19 40 40 H 1.08998 * 109.47913 * 301.16463 * 21 20 19 41 41 H 1.09002 * 109.52361 * 62.29086 * 22 21 20 42 42 H 1.08995 * 109.52691 * 182.42880 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9886 0.3943 1.2285 6 7 3.4701 1.0377 2.4430 7 6 3.7761 0.2359 3.6352 8 1 3.7281 -0.8234 3.3828 9 6 5.1817 0.5784 4.1331 10 6 2.7719 0.5406 4.7168 11 1 1.9853 1.2583 4.5367 12 6 2.8580 -0.0963 5.9367 13 7 1.9820 0.1699 6.8807 14 14 4.2190 -1.3372 6.2484 15 1 5.4052 -0.6408 6.8081 16 1 3.7442 -2.3604 7.2144 17 1 4.5896 -1.9969 4.9707 18 6 3.9916 0.4614 -1.2718 19 6 3.6030 1.2988 -2.4931 20 8 4.1915 2.5965 -2.3861 21 6 3.7651 3.3381 -1.2415 22 6 4.1603 2.5829 0.0303 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8465 -0.8899 28 1 3.6072 -0.6249 1.1660 29 1 5.0778 0.3729 1.2654 30 1 3.8289 1.9761 2.5364 31 1 5.4090 -0.0168 5.0175 32 1 5.9081 0.3580 3.3508 33 1 5.2297 1.6377 4.3855 34 1 2.0423 -0.2784 7.7388 35 1 3.5079 -0.5137 -1.3299 36 1 5.0736 0.3314 -1.2486 37 1 2.5181 1.3942 -2.5381 38 1 3.9628 0.8099 -3.3984 39 1 4.2419 4.3183 -1.2450 40 1 2.6824 3.4603 -1.2702 41 1 5.2457 2.4958 0.0798 42 1 3.7981 3.1254 0.9035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309948814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:01 Heat of formation + Delta-G solvation = -114.788716 kcal Electronic energy + Delta-G solvation = -20853.407431 eV Core-core repulsion = 17832.640801 eV Total energy + Delta-G solvation = -3020.766630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16808 -38.46643 -37.89456 -35.66629 -34.04368 -32.06755 -31.00835 -28.61775 -27.23279 -26.85661 -26.11714 -24.48887 -23.25860 -21.98370 -19.74590 -18.79602 -17.48405 -17.17972 -16.94770 -16.76166 -16.65033 -16.42033 -15.56749 -15.50899 -15.32911 -14.77372 -14.47801 -14.38919 -14.13999 -13.91606 -13.52255 -13.19736 -13.02897 -12.74943 -12.64682 -12.33018 -12.28280 -12.18451 -12.01074 -11.84660 -11.48660 -11.32444 -11.22902 -11.00185 -10.74091 -10.53902 -10.19611 -8.95941 -8.26741 -6.27922 1.27794 1.34373 1.43851 2.31885 2.93340 3.00445 3.07772 3.49135 3.72796 3.79893 3.98213 4.13414 4.23115 4.31781 4.35135 4.45776 4.51901 4.54799 4.59055 4.61193 4.67577 4.72134 4.77785 4.78890 4.85225 4.87948 4.91318 5.00799 5.02287 5.09775 5.19661 5.29096 5.38497 5.39688 5.68547 6.04219 6.29027 6.37862 6.70734 6.77459 6.82066 7.37004 8.90693 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.005833 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849272 B = 4799.400647 C = 5249.855409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.402 6.402 3 C 0.083 3.917 4 C -0.049 4.049 5 C 0.079 3.921 6 N -0.674 5.674 7 C 0.189 3.811 8 H 0.020 0.980 9 C -0.176 4.176 10 C -0.497 4.497 11 H 0.036 0.964 12 C 0.009 3.991 13 N -0.951 5.951 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.299 1.299 17 H -0.255 1.255 18 C -0.137 4.137 19 C 0.063 3.937 20 O -0.397 6.397 21 C 0.060 3.940 22 C -0.143 4.143 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.026 0.974 30 H 0.334 0.666 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 2.946 -19.110 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.322 6.322 3 C 0.007 3.993 4 C -0.050 4.050 5 C -0.050 4.050 6 N -0.305 5.305 7 C 0.079 3.921 8 H 0.038 0.962 9 C -0.235 4.235 10 C -0.536 4.536 11 H 0.054 0.946 12 C -0.188 4.188 13 N -0.592 5.592 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.227 1.227 17 H -0.179 1.179 18 C -0.175 4.175 19 C -0.014 4.014 20 O -0.316 6.316 21 C -0.016 4.016 22 C -0.181 4.181 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.783 2.553 -19.155 19.691 hybrid contribution 0.689 -0.366 1.321 1.534 sum 4.472 2.188 -17.834 18.516 Atomic orbital electron populations 1.22770 0.80567 1.03154 0.99950 1.87800 1.20364 1.28622 1.95370 1.22477 0.92836 0.84469 0.99518 1.20594 0.93653 0.95988 0.94717 1.21851 0.95893 0.97822 0.89469 1.60397 1.63540 1.05103 1.01435 1.19364 0.90965 0.93250 0.88477 0.96186 1.22716 0.99158 1.01584 1.00009 1.21252 1.12181 1.23404 0.96748 0.94560 1.25768 0.98440 0.98696 0.95851 1.70041 1.38435 1.45134 1.05636 0.85839 0.79283 0.78837 0.78232 1.19264 1.22715 1.17922 1.22116 1.01751 0.99770 0.93862 1.22657 0.97578 0.82943 0.98187 1.87889 1.69659 1.28756 1.45332 1.22694 0.99580 0.95275 0.84084 1.22211 1.01487 0.94851 0.99542 0.95337 0.92566 0.89135 0.93777 0.92785 0.92786 0.95551 0.84741 0.94767 0.92429 0.92388 0.92690 0.90522 0.91039 0.92897 0.87358 0.87216 0.92666 0.90505 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -12.60 9.41 -148.98 -1.40 -14.00 16 3 C 0.08 2.34 4.03 71.98 0.29 2.63 16 4 C -0.05 -1.29 0.43 -52.06 -0.02 -1.31 16 5 C 0.08 2.60 4.25 86.30 0.37 2.97 16 6 N -0.67 -26.57 5.27 -495.47 -2.61 -29.19 16 7 C 0.19 8.85 2.17 44.17 0.10 8.95 16 8 H 0.02 1.00 6.77 -2.39 -0.02 0.98 16 9 C -0.18 -7.23 8.64 71.98 0.62 -6.61 16 10 C -0.50 -28.74 9.42 25.60 0.24 -28.50 16 11 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 12 C 0.01 0.53 5.45 84.66 0.46 0.99 16 13 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 14 Si 0.95 45.78 24.37 68.60 1.67 47.45 16 15 H -0.27 -12.13 6.87 99.48 0.68 -11.44 16 16 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 17 H -0.25 -11.56 6.53 99.48 0.65 -10.91 16 18 C -0.14 -3.10 4.83 30.69 0.15 -2.95 16 19 C 0.06 1.23 6.57 72.01 0.47 1.71 16 20 O -0.40 -8.78 10.76 -148.98 -1.60 -10.39 16 21 C 0.06 1.17 6.57 72.01 0.47 1.65 16 22 C -0.14 -3.22 4.60 30.69 0.14 -3.08 16 23 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 27 H 0.05 1.28 5.01 -2.39 -0.01 1.27 16 28 H 0.05 2.00 7.56 -2.39 -0.02 1.99 16 29 H 0.03 0.82 7.57 -2.39 -0.02 0.80 16 30 H 0.33 12.17 6.99 -89.69 -0.63 11.54 16 31 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 32 H 0.06 1.99 7.56 -2.39 -0.02 1.98 16 33 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 34 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 35 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 38 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.03 6.63 -2.39 -0.02 1.01 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.83 6.96 -2.39 -0.02 1.81 16 Total: -1.00 -67.51 313.84 1.18 -66.33 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.29 Total: 21.26 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.54 Total: -21.49 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.31 Total: -89.16 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -3.01 Total: -24.39 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -67.51 1.18 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309948814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -67.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds