Wall clock time and date at job start Mon Mar 30 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99831 * 2 1 4 4 C 1.52999 * 109.54239 * 55.51924 * 3 2 1 5 5 N 1.46901 * 109.46936 * 64.99589 * 4 3 2 6 6 C 1.46907 * 110.99587 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47101 * 35.00613 * 6 5 4 8 8 C 1.52997 * 109.47225 * 275.00354 * 6 5 4 9 9 C 1.53002 * 109.46937 * 155.00087 * 6 5 4 10 10 C 1.50706 * 109.46975 * 295.00178 * 9 6 5 11 11 H 1.07994 * 120.00295 * 0.02562 * 10 9 6 12 12 C 1.37878 * 119.99624 * 179.72208 * 10 9 6 13 13 N 1.31520 * 119.99969 * 0.27731 * 12 10 9 14 14 Si 1.86799 * 119.99968 * 180.27573 * 12 10 9 15 15 H 1.48498 * 109.47107 * 90.00055 * 14 12 10 16 16 H 1.48494 * 109.47280 * 210.00452 * 14 12 10 17 17 H 1.48505 * 109.46865 * 330.00488 * 14 12 10 18 18 C 1.53178 * 109.54217 * 175.69383 * 3 2 1 19 19 C 1.53110 * 109.15591 * 63.06298 * 18 3 2 20 20 O 1.42906 * 109.48354 * 57.47797 * 19 18 3 21 21 C 1.42894 * 114.09669 * 298.88384 * 20 19 18 22 22 C 1.53098 * 109.41587 * 61.16108 * 21 20 19 23 23 H 1.09000 * 109.47453 * 174.23901 * 1 2 3 24 24 H 1.09005 * 109.47225 * 294.23979 * 1 2 3 25 25 H 1.09006 * 109.47307 * 54.23700 * 1 2 3 26 26 H 1.08999 * 109.47111 * 304.99680 * 4 3 2 27 27 H 1.09002 * 109.46964 * 184.99703 * 4 3 2 28 28 H 1.00902 * 110.99924 * 56.05050 * 5 4 3 29 29 H 1.09006 * 109.46870 * 299.99570 * 8 6 5 30 30 H 1.08994 * 109.47440 * 60.00173 * 8 6 5 31 31 H 1.09004 * 109.46745 * 179.97438 * 8 6 5 32 32 H 1.08992 * 109.46929 * 175.00169 * 9 6 5 33 33 H 1.09001 * 109.46818 * 54.99944 * 9 6 5 34 34 H 0.96996 * 119.99579 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.52767 * 182.88172 * 18 3 2 36 36 H 1.09004 * 109.52064 * 303.07408 * 18 3 2 37 37 H 1.08994 * 109.40678 * 297.49356 * 19 18 3 38 38 H 1.09008 * 109.49029 * 177.50915 * 19 18 3 39 39 H 1.09005 * 109.48495 * 301.18033 * 21 20 19 40 40 H 1.09000 * 109.49074 * 181.14756 * 21 20 19 41 41 H 1.09001 * 109.52253 * 182.48558 * 22 21 20 42 42 H 1.08999 * 109.57317 * 62.32849 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4726 2.1051 1.1885 5 7 1.9202 1.4812 2.4409 6 6 1.4222 2.2241 3.6064 7 1 0.4299 2.6190 3.3886 8 6 2.3740 3.3805 3.9188 9 6 1.3445 1.2870 4.8134 10 6 0.3157 0.2170 4.5532 11 1 -0.2281 0.2061 3.6202 12 6 0.0731 -0.7517 5.5038 13 7 0.7356 -0.7388 6.6398 14 14 -1.1967 -2.0825 5.1782 15 1 -0.5411 -3.2424 4.5225 16 1 -1.7998 -2.5165 6.4639 17 1 -2.2587 -1.5465 4.2892 18 6 3.5336 1.1882 0.1084 19 6 4.0703 0.4573 -1.1254 20 8 3.6778 1.1620 -2.3050 21 6 2.2633 1.2600 -2.4826 22 6 1.6542 2.0249 -1.3046 23 1 -0.3634 -1.0224 -0.1032 24 1 -0.3634 0.4219 0.9371 25 1 -0.3634 0.6006 -0.8339 26 1 0.3831 2.1151 1.1567 27 1 1.8471 3.1275 1.1378 28 1 2.9257 1.4015 2.4660 29 1 3.3664 2.9855 4.1367 30 1 2.4293 4.0480 3.0590 31 1 2.0042 3.9319 4.7833 32 1 1.0604 1.8568 5.6980 33 1 2.3175 0.8235 4.9766 34 1 0.5647 -1.4201 7.3087 35 1 3.9730 2.1843 0.1599 36 1 3.7928 0.6278 1.0067 37 1 3.6631 -0.5533 -1.1532 38 1 5.1581 0.4098 -1.0753 39 1 1.8324 0.2598 -2.5283 40 1 2.0492 1.7907 -3.4103 41 1 0.5706 2.0625 -1.4159 42 1 2.0534 3.0389 -1.2820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309959951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:21 Heat of formation + Delta-G solvation = -99.262144 kcal Electronic energy + Delta-G solvation = -20824.558476 eV Core-core repulsion = 17804.465129 eV Total energy + Delta-G solvation = -3020.093347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14745 -37.37145 -36.19776 -33.17218 -32.22040 -31.22852 -29.96084 -27.24348 -26.52838 -25.93862 -23.58294 -22.99717 -22.01681 -19.72211 -19.58498 -16.63373 -16.33157 -15.99209 -15.81610 -15.34892 -15.10463 -14.61803 -14.41890 -14.27813 -13.84723 -13.02856 -12.87746 -12.71144 -12.45469 -12.27125 -12.21235 -11.75662 -11.71308 -11.43858 -11.34908 -11.17482 -10.95431 -10.64001 -10.47310 -10.36604 -10.22810 -10.01734 -9.60574 -9.34392 -9.00475 -8.93817 -8.22084 -7.52438 -5.84584 -3.81571 3.41337 3.47001 3.49417 3.85681 3.96365 4.56656 4.59303 4.74512 4.83578 4.96149 5.10029 5.26191 5.38591 5.43358 5.53271 5.55672 5.62371 5.65103 5.71301 5.72752 5.80585 5.82023 5.91310 5.93648 6.00285 6.04134 6.11606 6.22258 6.26693 6.43886 6.62304 7.03646 7.17959 7.48440 7.57723 7.72034 8.03943 8.08937 8.19802 8.63552 9.22997 9.79250 11.27727 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.006038 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.415875 B = 4635.865299 C = 5274.638822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.122 3.878 4 C 0.036 3.964 5 N -0.653 5.653 6 C 0.088 3.912 7 H 0.061 0.939 8 C -0.180 4.180 9 C 0.034 3.966 10 C -0.483 4.483 11 H 0.057 0.943 12 C 0.049 3.951 13 N -0.905 5.905 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.291 1.291 17 H -0.277 1.277 18 C -0.143 4.143 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.068 3.932 22 C -0.181 4.181 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.331 0.669 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 6.075 -15.939 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.082 3.918 4 C -0.094 4.094 5 N -0.284 5.284 6 C -0.021 4.021 7 H 0.080 0.920 8 C -0.239 4.239 9 C -0.003 4.003 10 C -0.522 4.522 11 H 0.075 0.925 12 C -0.150 4.150 13 N -0.546 5.546 14 Si 0.718 3.282 15 H -0.209 1.209 16 H -0.217 1.217 17 H -0.202 1.202 18 C -0.180 4.180 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.009 4.009 22 C -0.220 4.220 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.150 0.850 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.101 5.425 -15.884 17.069 hybrid contribution -0.614 0.201 0.188 0.673 sum 2.487 5.625 -15.696 16.858 Atomic orbital electron populations 1.22749 0.81584 1.02121 1.00297 1.87940 1.19436 1.25806 1.94705 1.21429 0.93548 0.84300 0.92549 1.22530 1.00865 0.94902 0.91106 1.60528 1.15796 1.52407 0.99659 1.21813 0.95773 0.91965 0.92556 0.92040 1.22559 1.00954 0.99831 1.00557 1.19102 0.97511 0.93486 0.90249 1.21108 1.19877 1.09995 1.01199 0.92507 1.24995 0.96579 0.97991 0.95392 1.69965 1.42335 1.35117 1.07194 0.86648 0.81828 0.82613 0.77144 1.20883 1.21684 1.20208 1.22177 0.93365 1.02171 1.00332 1.22532 0.99601 0.95262 0.83802 1.87870 1.22214 1.77210 1.43371 1.22424 0.81491 0.99785 0.97163 1.22762 1.01974 1.00702 0.96537 0.90187 0.92425 0.95038 0.90857 0.95701 0.85004 0.93022 0.94549 0.92487 0.96567 0.96527 0.93401 0.90427 0.88948 0.92150 0.89103 0.92630 0.89388 0.90520 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.13 101.05 1.02 1.44 16 2 O -0.36 -5.73 9.27 -35.23 -0.33 -6.06 16 3 C 0.12 1.67 0.49 -90.44 -0.04 1.63 16 4 C 0.04 0.55 4.16 -3.82 -0.02 0.53 16 5 N -0.65 -12.01 5.85 -106.72 -0.62 -12.63 16 6 C 0.09 1.77 2.53 -67.71 -0.17 1.60 16 7 H 0.06 1.26 7.80 -51.93 -0.41 0.86 16 8 C -0.18 -3.01 9.16 37.16 0.34 -2.67 16 9 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 10 C -0.48 -13.63 8.84 -34.44 -0.30 -13.94 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 13 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 14 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 C -0.14 -1.83 4.59 -26.58 -0.12 -1.95 16 19 C 0.06 0.78 6.69 37.21 0.25 1.03 16 20 O -0.39 -5.01 10.77 -35.23 -0.38 -5.38 16 21 C 0.07 0.77 6.69 37.21 0.25 1.02 16 22 C -0.18 -2.07 4.77 -26.59 -0.13 -2.20 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.96 6.58 -51.93 -0.34 0.61 16 25 H 0.03 0.37 6.24 -51.93 -0.32 0.05 16 26 H 0.07 1.16 6.26 -51.93 -0.32 0.84 16 27 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 28 H 0.33 5.76 6.44 -39.29 -0.25 5.51 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.27 6.71 -51.93 -0.35 0.93 16 37 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 38 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 39 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.81 6.40 -51.93 -0.33 0.48 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -31.19 324.47 -7.13 -38.33 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.26 Total: 1.89 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 0.85 Total: -11.43 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.11 Total: -39.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.71 Total: -11.44 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.19 -7.13 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309959951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.934 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds