Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.53819 * 2 1 4 4 C 1.53095 * 109.50620 * 120.10826 * 2 1 3 5 5 N 1.47017 * 109.25301 * 176.78592 * 4 2 1 6 6 C 1.46902 * 110.99721 * 177.61086 * 5 4 2 7 7 C 1.53003 * 109.47158 * 199.38145 * 6 5 4 8 8 O 1.42908 * 109.46869 * 64.74465 * 7 6 5 9 9 C 1.42905 * 113.99822 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46669 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00499 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99594 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99706 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99915 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47561 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47311 * 119.99764 * 14 12 10 17 17 H 1.48500 * 109.47093 * 239.99917 * 14 12 10 18 18 C 1.47017 * 110.75532 * 301.38227 * 5 4 2 19 19 C 1.53096 * 109.25423 * 58.61543 * 18 5 4 20 20 C 1.53007 * 109.50615 * 63.09236 * 19 18 5 21 21 C 1.53002 * 109.50622 * 183.17426 * 19 18 5 22 22 O 1.43007 * 109.26445 * 303.15502 * 19 18 5 23 23 H 1.09004 * 109.47039 * 180.10677 * 1 2 3 24 24 H 1.08997 * 109.47289 * 300.10678 * 1 2 3 25 25 H 1.08998 * 109.47302 * 60.10945 * 1 2 3 26 26 H 1.08997 * 109.50727 * 296.71529 * 4 2 1 27 27 H 1.08997 * 109.50472 * 56.85242 * 4 2 1 28 28 H 1.09006 * 109.47050 * 319.37677 * 6 5 4 29 29 H 1.08995 * 109.47294 * 79.38424 * 6 5 4 30 30 H 1.08998 * 109.47640 * 184.74425 * 7 6 5 31 31 H 1.08998 * 109.47408 * 304.75131 * 7 6 5 32 32 H 1.08994 * 109.47197 * 300.00628 * 9 8 7 33 33 H 1.09002 * 109.46484 * 60.00565 * 9 8 7 34 34 H 0.96999 * 119.99921 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.50361 * 298.68474 * 18 5 4 36 36 H 1.08992 * 109.50963 * 178.55437 * 18 5 4 37 37 H 1.08995 * 109.47045 * 59.99237 * 20 19 18 38 38 H 1.08993 * 109.47081 * 180.02562 * 20 19 18 39 39 H 1.09009 * 109.46663 * 299.99658 * 20 19 18 40 40 H 1.08997 * 109.47173 * 60.00205 * 21 19 18 41 41 H 1.09003 * 109.47297 * 180.02562 * 21 19 18 42 42 H 1.09004 * 109.47046 * 300.00354 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0412 -0.7239 1.2484 5 7 3.5093 -0.7883 1.2044 6 6 4.0447 -1.4268 2.4142 7 6 5.5209 -1.0581 2.5748 8 8 5.6388 0.3483 2.7995 9 6 6.9847 0.7997 2.9643 10 6 6.9902 2.2890 3.1945 11 1 6.0592 2.8360 3.2135 12 6 8.1840 2.9533 3.3808 13 7 9.3177 2.2871 3.3581 14 14 8.1910 4.7992 3.6668 15 1 6.7961 5.3085 3.6473 16 1 8.8075 5.0935 4.9854 17 1 8.9749 5.4633 2.5945 18 6 3.9640 -1.4883 -0.0059 19 6 3.4334 -0.7567 -1.2416 20 6 4.0229 0.6543 -1.2924 21 6 3.8367 -1.5244 -2.5022 22 8 2.0076 -0.6761 -1.1662 23 1 -0.3633 -1.0277 0.0019 24 1 -0.3634 0.5155 0.8890 25 1 -0.3634 0.5121 -0.8909 26 1 1.7274 -0.1795 2.1390 27 1 1.6332 -1.7342 1.2759 28 1 3.4871 -1.0810 3.2846 29 1 3.9480 -2.5090 2.3271 30 1 5.9401 -1.5980 3.4238 31 1 6.0635 -1.3279 1.6688 32 1 7.4337 0.2982 3.8215 33 1 7.5579 0.5683 2.0665 34 1 10.1576 2.7544 3.4888 35 1 3.5867 -2.5109 0.0017 36 1 5.0536 -1.5019 -0.0308 37 1 5.1097 0.5923 -1.3459 38 1 3.6444 1.1748 -2.1721 39 1 3.7339 1.2012 -0.3948 40 1 3.4152 -2.5289 -2.4663 41 1 3.4590 -1.0028 -3.3817 42 1 4.9235 -1.5881 -2.5568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338926774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = -118.149220 kcal Electronic energy + Delta-G solvation = -20413.278498 eV Core-core repulsion = 17392.366145 eV Total energy + Delta-G solvation = -3020.912352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17312 -38.67774 -36.72213 -35.29440 -34.86377 -32.08042 -30.57331 -28.85302 -28.31179 -27.73748 -25.34784 -24.43113 -22.76006 -22.18961 -20.30909 -18.61308 -17.71469 -17.50284 -17.10873 -16.67584 -16.22995 -15.99804 -15.92220 -15.48717 -14.93519 -14.76514 -14.15200 -13.86844 -13.79269 -13.42121 -13.21648 -13.04389 -12.95066 -12.84371 -12.82568 -12.71620 -12.70620 -12.54905 -12.45715 -12.11964 -11.96203 -11.67315 -11.25654 -11.16420 -10.85529 -10.46978 -10.17116 -9.22945 -8.31418 -6.42935 1.39518 1.40870 1.55692 2.35261 2.65325 2.81764 3.02391 3.23507 3.73737 3.86229 3.92307 4.01092 4.14661 4.23384 4.29396 4.34916 4.45269 4.46561 4.58761 4.64175 4.67342 4.73160 4.74491 4.77942 4.82288 4.90179 4.92971 4.99018 5.04824 5.12432 5.19965 5.23971 5.28637 5.42687 5.56411 5.97807 6.03377 6.05412 6.31482 6.57977 6.87532 7.29358 8.81243 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.004816 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.914258 B = 5811.979343 C = 5891.022930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.054 0.946 4 C 0.030 3.970 5 N -0.547 5.547 6 C 0.070 3.930 7 C 0.061 3.939 8 O -0.393 6.393 9 C 0.210 3.790 10 C -0.542 4.542 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.034 3.966 19 C 0.114 3.886 20 C -0.163 4.163 21 C -0.132 4.132 22 O -0.383 6.383 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.034 0.966 32 H -0.017 1.017 33 H -0.019 1.019 34 H 0.270 0.730 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -8.501 -8.363 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.024 3.976 3 H 0.072 0.928 4 C -0.098 4.098 5 N -0.271 5.271 6 C -0.058 4.058 7 C -0.017 4.017 8 O -0.313 6.313 9 C 0.135 3.865 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.095 4.095 19 C 0.075 3.925 20 C -0.220 4.220 21 C -0.189 4.189 22 O -0.303 6.303 23 H 0.085 0.915 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.001 0.999 33 H -0.001 1.001 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.022 -7.965 -8.486 19.003 hybrid contribution 0.770 -0.140 0.544 0.954 sum -14.252 -8.105 -7.942 18.217 Atomic orbital electron populations 1.21714 0.90793 1.03285 1.03456 1.22262 0.96029 0.95315 0.83961 0.92809 1.22824 0.86954 1.00250 0.99775 1.61998 1.09401 1.53728 1.02018 1.22079 0.93674 0.97078 0.92966 1.22537 0.97115 0.83410 0.98589 1.87895 1.28363 1.22325 1.92700 1.19769 0.79302 0.94561 0.92843 1.21386 0.93572 0.92972 1.50077 0.92295 1.25934 0.94334 1.04595 0.94284 1.70076 0.98398 1.38340 1.50276 0.85167 0.78618 0.77533 0.78279 1.18937 1.19553 1.19674 1.22800 1.00788 0.95642 0.90225 1.21597 0.80638 0.95127 0.95130 1.22206 1.01028 0.96939 1.01872 1.21731 1.02102 1.00154 0.94963 1.87955 1.20837 1.78196 1.43352 0.91496 0.89523 0.91400 0.89455 0.93455 0.89975 0.91098 0.93480 0.94746 0.99934 1.00147 0.92105 0.93415 0.90737 0.92460 0.91767 0.92985 0.91254 0.91048 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.57 71.98 0.69 -1.73 16 2 C 0.08 2.02 3.03 30.63 0.09 2.12 16 3 H 0.05 1.52 6.49 -2.38 -0.02 1.50 16 4 C 0.03 0.75 4.88 86.31 0.42 1.17 16 5 N -0.55 -16.63 3.97 -895.21 -3.56 -20.18 16 6 C 0.07 2.07 5.39 86.30 0.46 2.53 16 7 C 0.06 2.31 6.13 71.98 0.44 2.75 16 8 O -0.39 -19.75 10.27 -148.98 -1.53 -21.28 16 9 C 0.21 12.13 5.69 71.24 0.41 12.54 16 10 C -0.54 -33.05 9.43 25.60 0.24 -32.80 16 11 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 12 C 0.01 0.40 5.46 84.66 0.46 0.86 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 14 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C 0.03 0.92 4.17 86.31 0.36 1.28 16 19 C 0.11 2.99 1.11 -10.76 -0.01 2.98 16 20 C -0.16 -4.80 8.17 71.98 0.59 -4.22 16 21 C -0.13 -2.69 8.85 71.98 0.64 -2.06 16 22 O -0.38 -10.20 9.93 -148.98 -1.48 -11.67 16 23 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 2.40 7.86 -2.38 -0.02 2.38 16 29 H 0.07 1.69 7.99 -2.39 -0.02 1.68 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.30 6.76 -2.39 -0.02 1.28 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 36 H 0.07 2.19 6.74 -2.39 -0.02 2.18 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.79 6.12 -2.38 -0.01 1.78 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -68.52 332.12 1.49 -67.02 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.96 Total: 9.98 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.79 Total: -14.58 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.27 Total: -76.63 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -3.01 Total: -32.95 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.52 1.49 -67.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338926774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.127 kcal (2) G-P(sol) polarization free energy of solvation -68.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds