Wall clock time and date at job start Mon Mar 30 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47328 * 2 1 4 4 C 1.46893 * 110.99850 * 72.25448 * 3 2 1 5 5 C 1.53006 * 109.47066 * 200.03898 * 4 3 2 6 6 O 1.42903 * 109.46855 * 64.61777 * 5 4 3 7 7 C 1.42895 * 114.00058 * 184.88771 * 6 5 4 8 8 C 1.50703 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00323 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00037 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99737 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47090 * 119.99824 * 12 10 8 15 15 H 1.48501 * 109.47291 * 240.00124 * 12 10 8 16 16 C 1.46904 * 110.99752 * 196.21152 * 3 2 1 17 17 C 1.52999 * 109.47220 * 66.04718 * 16 3 2 18 18 H 1.08997 * 109.87111 * 306.00116 * 17 16 3 19 19 C 1.54104 * 109.87662 * 185.00024 * 17 16 3 20 20 C 1.54812 * 104.30563 * 238.47855 * 19 17 16 21 21 C 1.55230 * 101.98467 * 339.25952 * 20 19 17 22 22 O 1.43738 * 109.88311 * 67.16974 * 17 16 3 23 23 H 1.09008 * 109.46878 * 61.22545 * 1 2 3 24 24 H 1.08998 * 109.47442 * 181.22661 * 1 2 3 25 25 H 1.08996 * 109.46623 * 301.22952 * 1 2 3 26 26 H 1.09010 * 109.46993 * 239.99893 * 2 1 3 27 27 H 1.09002 * 109.47087 * 120.00326 * 2 1 3 28 28 H 1.08989 * 109.47361 * 320.04405 * 4 3 2 29 29 H 1.09003 * 109.46859 * 80.04322 * 4 3 2 30 30 H 1.08996 * 109.46948 * 184.61765 * 5 4 3 31 31 H 1.08998 * 109.47202 * 304.62166 * 5 4 3 32 32 H 1.08994 * 109.47381 * 300.00428 * 7 6 5 33 33 H 1.09005 * 109.46753 * 60.00586 * 7 6 5 34 34 H 0.97005 * 120.00439 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.47300 * 306.04477 * 16 3 2 36 36 H 1.09004 * 109.46827 * 186.04330 * 16 3 2 37 37 H 1.09003 * 110.48852 * 357.21603 * 19 17 16 38 38 H 1.09000 * 110.49032 * 119.73749 * 19 17 16 39 39 H 1.08996 * 110.90826 * 97.38070 * 20 19 17 40 40 H 1.08994 * 110.91077 * 220.99008 * 20 19 17 41 41 H 1.08991 * 110.52186 * 278.38301 * 21 20 19 42 42 H 1.09001 * 110.78006 * 155.49829 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8011 2.0206 1.3061 5 6 1.8427 3.5417 1.1464 6 8 0.7527 3.9643 0.3245 7 6 0.7614 5.3605 0.0203 8 6 -0.4260 5.6932 -0.8460 9 1 -1.1183 4.9163 -1.1349 10 6 -0.6286 6.9895 -1.2697 11 7 0.2147 7.9355 -0.9183 12 14 -2.1000 7.4019 -2.3440 13 1 -2.8895 6.1697 -2.5963 14 1 -2.9524 8.4025 -1.6532 15 1 -1.6282 7.9613 -3.6362 16 6 3.4368 1.4422 -0.3829 17 6 3.5895 1.0022 -1.8403 18 1 3.1299 0.0241 -1.9820 19 6 5.0831 0.9383 -2.2145 20 6 5.2209 1.9167 -3.4064 21 6 3.7586 2.0079 -3.9193 22 8 2.9721 1.9663 -2.7093 23 1 -0.3633 0.4947 -0.9008 24 1 -0.3634 -1.0274 0.0220 25 1 -0.3632 0.5328 0.8787 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.8283 1.7227 1.6969 29 1 2.5824 1.7065 1.9983 30 1 1.7626 4.0122 2.1263 31 1 2.7837 3.8325 0.6796 32 1 0.7080 5.9343 0.9454 33 1 1.6802 5.6110 -0.5102 34 1 0.0724 8.8475 -1.2166 35 1 4.0140 0.7775 0.2598 36 1 3.8023 2.4631 -0.2715 37 1 5.7003 1.2666 -1.3782 38 1 5.3578 -0.0722 -2.5168 39 1 5.5765 2.8908 -3.0709 40 1 5.8790 1.5065 -4.1723 41 1 3.5243 1.1570 -4.5589 42 1 3.5935 2.9442 -4.4524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338946086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:31 Heat of formation + Delta-G solvation = -91.662549 kcal Electronic energy + Delta-G solvation = -20224.100589 eV Core-core repulsion = 17204.336785 eV Total energy + Delta-G solvation = -3019.763804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49744 -37.64517 -35.94255 -32.60031 -32.07707 -31.20597 -30.48676 -27.92862 -26.53373 -24.56684 -22.60252 -22.13437 -21.94587 -20.89223 -19.99014 -16.57968 -16.24307 -16.18572 -15.48035 -15.23164 -15.09658 -14.83531 -14.19131 -14.11274 -13.56164 -13.54502 -13.12270 -12.78615 -12.42174 -12.06511 -11.73804 -11.69077 -11.57598 -11.37566 -11.21955 -11.02378 -10.89544 -10.85230 -10.68577 -10.66224 -10.33787 -10.21359 -9.85921 -9.36738 -8.91430 -8.64241 -7.96060 -7.89289 -5.97533 -3.96933 3.37831 3.43644 3.51630 3.90785 4.18971 4.47579 4.56482 4.75133 4.88290 5.01344 5.05910 5.21158 5.30217 5.33780 5.39143 5.45235 5.55335 5.62031 5.65466 5.71402 5.75880 5.82954 5.86398 5.92702 5.97111 6.03872 6.07849 6.15942 6.24483 6.27382 6.46416 6.59989 7.14592 7.27803 7.40579 7.45623 7.62066 7.95466 8.33339 8.80386 9.19065 9.67170 11.14513 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.005781 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.460636 B = 4841.938774 C = 5607.392822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.059 3.941 5 C 0.071 3.929 6 O -0.376 6.376 7 C 0.196 3.804 8 C -0.503 4.503 9 H 0.066 0.934 10 C 0.053 3.947 11 N -0.902 5.902 12 Si 0.905 3.095 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.056 3.944 17 C 0.081 3.919 18 H 0.065 0.935 19 C -0.152 4.152 20 C -0.155 4.155 21 C 0.041 3.959 22 O -0.340 6.340 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.034 0.966 32 H -0.001 1.001 33 H 0.003 0.997 34 H 0.261 0.739 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -16.473 -0.461 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.239 5.239 4 C -0.069 4.069 5 C -0.007 4.007 6 O -0.295 6.295 7 C 0.121 3.879 8 C -0.541 4.541 9 H 0.085 0.915 10 C -0.147 4.147 11 N -0.543 5.543 12 Si 0.733 3.267 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.072 4.072 17 C 0.022 3.978 18 H 0.082 0.918 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.036 4.036 22 O -0.258 6.258 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.614 -16.024 -0.843 18.706 hybrid contribution 0.294 0.037 0.096 0.312 sum 9.908 -15.987 -0.748 18.823 Atomic orbital electron populations 1.21750 0.94635 1.00352 1.03558 1.22114 0.96737 0.89171 0.99662 1.61802 1.16589 1.16148 1.29364 1.22190 1.00995 0.94757 0.88931 1.22185 0.91779 0.92779 0.94003 1.87938 1.44639 1.27871 1.69061 1.20132 0.97084 0.76115 0.94530 1.21113 1.09145 0.93827 1.30016 0.91542 1.24934 0.97111 0.95932 0.96693 1.69982 1.36741 1.01322 1.46208 0.86320 0.82171 0.78339 0.79908 1.19476 1.21020 1.20962 1.22331 0.89220 1.01934 0.93687 1.22769 0.91215 0.92786 0.90995 0.91762 1.22993 0.96940 1.00077 0.99065 1.23164 0.98119 1.00299 0.97646 1.23589 0.89152 1.01924 0.88949 1.89205 1.50041 1.60411 1.26177 0.91293 0.93194 0.92467 0.91206 0.95792 0.90037 0.94550 0.94788 0.94798 0.98333 0.97942 0.92953 0.94469 0.89793 0.90562 0.90962 0.90400 0.90630 0.92815 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.00 37.16 0.37 -1.64 16 2 C 0.05 0.68 5.55 -3.82 -0.02 0.66 16 3 N -0.51 -8.38 4.31 -234.63 -1.01 -9.40 16 4 C 0.06 0.95 5.21 -3.82 -0.02 0.93 16 5 C 0.07 1.42 6.13 37.16 0.23 1.65 16 6 O -0.38 -9.74 10.27 -35.23 -0.36 -10.10 16 7 C 0.20 5.71 5.69 36.01 0.20 5.91 16 8 C -0.50 -15.59 9.43 -34.44 -0.32 -15.91 16 9 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -28.07 13.29 55.43 0.74 -27.33 16 12 Si 0.91 22.79 29.54 -169.99 -5.02 17.77 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 C 0.06 0.80 4.24 -3.82 -0.02 0.78 16 17 C 0.08 1.09 3.41 -26.15 -0.09 1.00 16 18 H 0.06 0.82 6.10 -51.93 -0.32 0.50 16 19 C -0.15 -1.56 6.64 -25.20 -0.17 -1.73 16 20 C -0.15 -1.62 7.17 -24.60 -0.18 -1.80 16 21 C 0.04 0.53 7.72 38.34 0.30 0.83 16 22 O -0.34 -5.91 11.17 -35.23 -0.39 -6.30 16 23 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 26 H 0.07 0.87 5.86 -51.92 -0.30 0.57 16 27 H 0.02 0.28 8.05 -51.93 -0.42 -0.13 16 28 H 0.08 1.32 6.24 -51.94 -0.32 0.99 16 29 H 0.04 0.49 7.99 -51.93 -0.42 0.08 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 32 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 33 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.08 1.32 6.59 -51.93 -0.34 0.98 16 37 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -34.32 333.95 -8.23 -42.55 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.40 Total: -4.42 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 0.19 Total: -7.80 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.28 Total: -36.73 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.76 Total: -16.40 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.32 -8.23 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338946086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.114 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds