Wall clock time and date at job start Mon Mar 30 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47328 * 2 1 4 4 C 1.46893 * 110.99850 * 72.25448 * 3 2 1 5 5 C 1.53006 * 109.47066 * 200.03898 * 4 3 2 6 6 O 1.42903 * 109.46855 * 64.61777 * 5 4 3 7 7 C 1.42895 * 114.00058 * 184.88771 * 6 5 4 8 8 C 1.50703 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00323 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00037 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99737 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00164 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47164 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47090 * 119.99824 * 12 10 8 15 15 H 1.48501 * 109.47291 * 240.00124 * 12 10 8 16 16 C 1.46904 * 110.99752 * 196.21152 * 3 2 1 17 17 C 1.52999 * 109.47220 * 66.04718 * 16 3 2 18 18 H 1.08997 * 109.87111 * 306.00116 * 17 16 3 19 19 C 1.54104 * 109.87662 * 185.00024 * 17 16 3 20 20 C 1.54812 * 104.30563 * 238.47855 * 19 17 16 21 21 C 1.55230 * 101.98467 * 339.25952 * 20 19 17 22 22 O 1.43738 * 109.88311 * 67.16974 * 17 16 3 23 23 H 1.09008 * 109.46878 * 61.22545 * 1 2 3 24 24 H 1.08998 * 109.47442 * 181.22661 * 1 2 3 25 25 H 1.08996 * 109.46623 * 301.22952 * 1 2 3 26 26 H 1.09010 * 109.46993 * 239.99893 * 2 1 3 27 27 H 1.09002 * 109.47087 * 120.00326 * 2 1 3 28 28 H 1.08989 * 109.47361 * 320.04405 * 4 3 2 29 29 H 1.09003 * 109.46859 * 80.04322 * 4 3 2 30 30 H 1.08996 * 109.46948 * 184.61765 * 5 4 3 31 31 H 1.08998 * 109.47202 * 304.62166 * 5 4 3 32 32 H 1.08994 * 109.47381 * 300.00428 * 7 6 5 33 33 H 1.09005 * 109.46753 * 60.00586 * 7 6 5 34 34 H 0.97005 * 120.00439 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.47300 * 306.04477 * 16 3 2 36 36 H 1.09004 * 109.46827 * 186.04330 * 16 3 2 37 37 H 1.09003 * 110.48852 * 357.21603 * 19 17 16 38 38 H 1.09000 * 110.49032 * 119.73749 * 19 17 16 39 39 H 1.08996 * 110.90826 * 97.38070 * 20 19 17 40 40 H 1.08994 * 110.91077 * 220.99008 * 20 19 17 41 41 H 1.08991 * 110.52186 * 278.38301 * 21 20 19 42 42 H 1.09001 * 110.78006 * 155.49829 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8011 2.0206 1.3061 5 6 1.8427 3.5417 1.1464 6 8 0.7527 3.9643 0.3245 7 6 0.7614 5.3605 0.0203 8 6 -0.4260 5.6932 -0.8460 9 1 -1.1183 4.9163 -1.1349 10 6 -0.6286 6.9895 -1.2697 11 7 0.2147 7.9355 -0.9183 12 14 -2.1000 7.4019 -2.3440 13 1 -2.8895 6.1697 -2.5963 14 1 -2.9524 8.4025 -1.6532 15 1 -1.6282 7.9613 -3.6362 16 6 3.4368 1.4422 -0.3829 17 6 3.5895 1.0022 -1.8403 18 1 3.1299 0.0241 -1.9820 19 6 5.0831 0.9383 -2.2145 20 6 5.2209 1.9167 -3.4064 21 6 3.7586 2.0079 -3.9193 22 8 2.9721 1.9663 -2.7093 23 1 -0.3633 0.4947 -0.9008 24 1 -0.3634 -1.0274 0.0220 25 1 -0.3632 0.5328 0.8787 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.8283 1.7227 1.6969 29 1 2.5824 1.7065 1.9983 30 1 1.7626 4.0122 2.1263 31 1 2.7837 3.8325 0.6796 32 1 0.7080 5.9343 0.9454 33 1 1.6802 5.6110 -0.5102 34 1 0.0724 8.8475 -1.2166 35 1 4.0140 0.7775 0.2598 36 1 3.8023 2.4631 -0.2715 37 1 5.7003 1.2666 -1.3782 38 1 5.3578 -0.0722 -2.5168 39 1 5.5765 2.8908 -3.0709 40 1 5.8790 1.5065 -4.1723 41 1 3.5243 1.1570 -4.5589 42 1 3.5935 2.9442 -4.4524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338946086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:31 Heat of formation + Delta-G solvation = -116.337789 kcal Electronic energy + Delta-G solvation = -20225.170588 eV Core-core repulsion = 17204.336785 eV Total energy + Delta-G solvation = -3020.833803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55666 -39.04937 -37.70293 -34.90063 -33.08548 -32.29044 -31.84051 -29.58253 -28.37454 -25.69379 -24.49697 -23.72275 -23.08569 -21.90069 -21.16482 -18.61912 -17.66334 -17.43073 -17.16135 -16.52968 -16.40462 -16.31438 -15.96381 -15.43214 -15.09091 -14.77438 -14.44434 -14.24333 -13.60595 -13.46403 -13.38089 -13.18013 -12.76263 -12.70893 -12.61249 -12.53988 -12.45768 -12.22755 -12.01719 -11.91971 -11.80290 -11.59317 -11.36386 -11.20928 -10.83435 -10.46950 -10.13166 -9.02269 -8.30573 -6.41887 1.38099 1.40631 1.55594 2.36151 2.85415 3.02600 3.15000 3.29891 3.68112 3.81778 3.95715 4.11139 4.13397 4.22277 4.26020 4.40109 4.42635 4.49841 4.60144 4.65796 4.68359 4.70774 4.74143 4.80326 4.84377 4.90350 4.92952 4.97969 5.05044 5.14035 5.15714 5.21748 5.25046 5.44759 5.57151 5.99980 6.11273 6.24040 6.38318 6.60176 6.90354 7.30193 8.82467 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.005781 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.460636 B = 4841.938774 C = 5607.392822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.551 5.551 4 C 0.068 3.932 5 C 0.061 3.939 6 O -0.392 6.392 7 C 0.214 3.786 8 C -0.541 4.541 9 H 0.056 0.944 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.983 3.017 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.271 1.271 16 C 0.057 3.943 17 C 0.074 3.926 18 H 0.073 0.927 19 C -0.144 4.144 20 C -0.149 4.149 21 C 0.031 3.969 22 O -0.393 6.393 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.028 0.972 32 H -0.018 1.018 33 H -0.025 1.025 34 H 0.270 0.730 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -18.141 -0.750 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.276 5.276 4 C -0.059 4.059 5 C -0.017 4.017 6 O -0.311 6.311 7 C 0.138 3.862 8 C -0.578 4.578 9 H 0.075 0.925 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.806 3.194 13 H -0.190 1.190 14 H -0.192 1.192 15 H -0.196 1.196 16 C -0.070 4.070 17 C 0.017 3.983 18 H 0.091 0.909 19 C -0.182 4.182 20 C -0.186 4.186 21 C -0.045 4.045 22 O -0.313 6.313 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.000 1.000 33 H -0.007 1.007 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.026 -17.710 -1.118 20.382 hybrid contribution 0.226 0.539 0.219 0.624 sum 10.253 -17.171 -0.899 20.020 Atomic orbital electron populations 1.21736 0.95428 1.01578 1.01303 1.22135 0.95999 0.87868 1.01297 1.61702 1.18281 1.18160 1.29471 1.22081 1.02268 0.91530 0.90054 1.22563 0.89750 0.96036 0.93322 1.87895 1.47172 1.25715 1.70361 1.19718 0.95452 0.77848 0.93157 1.21380 1.10054 0.94574 1.31839 0.92525 1.25967 1.00424 0.95268 0.97640 1.70084 1.38448 1.02008 1.46695 0.85144 0.77897 0.78390 0.78015 1.19050 1.19243 1.19579 1.22364 0.88495 1.01207 0.94973 1.22975 0.93253 0.92163 0.89942 0.90920 1.22988 0.94644 1.01485 0.99085 1.23142 0.96716 1.00192 0.98576 1.23774 0.90561 1.02077 0.88136 1.89145 1.52153 1.61868 1.28128 0.94543 0.90279 0.93578 0.90220 0.93204 0.90149 0.90916 0.93709 0.95345 1.00009 1.00690 0.92098 0.91247 0.92384 0.89713 0.88212 0.91628 0.87723 0.91072 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.00 71.98 0.72 -3.13 16 2 C 0.05 1.35 5.55 86.30 0.48 1.82 16 3 N -0.55 -17.59 4.31 -896.22 -3.87 -21.46 16 4 C 0.07 2.15 5.21 86.31 0.45 2.60 16 5 C 0.06 2.50 6.13 71.98 0.44 2.94 16 6 O -0.39 -21.20 10.27 -148.98 -1.53 -22.73 16 7 C 0.21 13.08 5.69 71.24 0.41 13.48 16 8 C -0.54 -34.68 9.43 25.60 0.24 -34.44 16 9 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 10 C 0.00 0.30 5.46 84.66 0.46 0.76 16 11 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 12 Si 0.98 46.95 29.54 68.60 2.03 48.97 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.06 1.56 4.24 86.30 0.37 1.93 16 17 C 0.07 1.92 3.41 30.97 0.11 2.03 16 18 H 0.07 1.71 6.10 -2.39 -0.01 1.70 16 19 C -0.14 -2.60 6.64 31.59 0.21 -2.39 16 20 C -0.15 -2.92 7.17 31.98 0.23 -2.69 16 21 C 0.03 0.81 7.72 72.75 0.56 1.37 16 22 O -0.39 -14.03 11.17 -148.98 -1.66 -15.69 16 23 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.32 6.52 -2.39 -0.02 1.30 16 26 H 0.08 1.82 5.86 -2.38 -0.01 1.80 16 27 H 0.05 1.00 8.05 -2.39 -0.02 0.98 16 28 H 0.08 2.54 6.24 -2.39 -0.01 2.52 16 29 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.19 6.68 -2.39 -0.02 1.17 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H -0.02 -1.60 8.14 -2.38 -0.02 -1.62 16 34 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 35 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 36 H 0.06 1.86 6.59 -2.39 -0.02 1.84 16 37 H 0.08 1.39 7.70 -2.39 -0.02 1.37 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.90 333.95 0.89 -76.01 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.97 Total: 9.16 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.67 Total: -15.71 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.58 Total: -80.01 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -3.19 Total: -38.42 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.90 0.89 -76.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338946086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.328 kcal (2) G-P(sol) polarization free energy of solvation -76.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds