Wall clock time and date at job start Mon Mar 30 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47916 * 2 1 4 4 O 1.42904 * 109.47228 * 120.00785 * 2 1 3 5 5 C 1.53002 * 109.46836 * 240.00116 * 2 1 3 6 6 C 1.53003 * 109.47167 * 175.27056 * 5 2 1 7 7 H 1.08993 * 109.88041 * 56.47236 * 6 5 2 8 8 C 1.54313 * 109.88536 * 295.26913 * 6 5 2 9 9 C 1.55142 * 103.02273 * 218.31061 * 8 6 5 10 10 C 1.54911 * 101.64723 * 35.65423 * 9 8 6 11 11 N 1.47449 * 109.88723 * 177.50208 * 6 5 2 12 12 C 1.46896 * 111.00190 * 356.14783 * 11 6 5 13 13 C 1.52996 * 109.47059 * 185.02881 * 12 11 6 14 14 O 1.42891 * 109.47314 * 64.99893 * 13 12 11 15 15 C 1.42905 * 114.00021 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46905 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99757 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47416 * 89.99781 * 20 18 16 22 22 H 1.48501 * 109.46909 * 210.00010 * 20 18 16 23 23 H 1.48503 * 109.46976 * 329.99802 * 20 18 16 24 24 H 1.08989 * 109.47916 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46974 * 300.00079 * 1 2 3 26 26 H 1.09002 * 109.46967 * 59.99080 * 1 2 3 27 27 H 0.96698 * 114.00217 * 55.04655 * 4 2 1 28 28 H 1.09001 * 109.47339 * 55.26757 * 5 2 1 29 29 H 1.09003 * 109.47037 * 295.26471 * 5 2 1 30 30 H 1.09001 * 110.70939 * 336.69610 * 8 6 5 31 31 H 1.09007 * 110.70417 * 99.92797 * 8 6 5 32 32 H 1.09004 * 110.99072 * 277.56785 * 9 8 6 33 33 H 1.08994 * 110.99072 * 153.74586 * 9 8 6 34 34 H 1.09003 * 110.37201 * 204.09914 * 10 9 8 35 35 H 1.09001 * 110.37290 * 81.76334 * 10 9 8 36 36 H 1.09005 * 109.47262 * 305.02666 * 12 11 6 37 37 H 1.08998 * 109.47368 * 65.02350 * 12 11 6 38 38 H 1.09011 * 109.47012 * 185.00190 * 13 12 11 39 39 H 1.09007 * 109.47204 * 304.99485 * 13 12 11 40 40 H 1.08996 * 109.47073 * 299.99435 * 15 14 13 41 41 H 1.09001 * 109.46690 * 60.00347 * 15 14 13 42 42 H 0.97002 * 119.99601 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0399 -0.7212 -1.2493 6 6 3.5653 -0.6191 -1.3103 7 1 4.0007 -1.0237 -0.3966 8 6 3.9860 0.8548 -1.4885 9 6 5.1915 0.7593 -2.4604 10 6 4.7616 -0.4127 -3.3777 11 7 4.0715 -1.3623 -2.4789 12 6 2.9786 -2.0503 -3.1790 13 6 3.5557 -2.9085 -4.3064 14 8 4.3613 -3.9486 -3.7487 15 6 4.9506 -4.8128 -4.7224 16 6 5.7733 -5.8664 -4.0266 17 1 5.8399 -5.8750 -2.9486 18 6 6.4419 -6.8188 -4.7662 19 7 6.3612 -6.8081 -6.0788 20 14 7.4622 -8.1244 -3.9037 21 1 6.6109 -9.3059 -3.6130 22 1 8.5899 -8.5304 -4.7804 23 1 7.9969 -7.5747 -2.6320 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.6603 -1.5706 1.2718 28 1 1.6090 -0.2587 -2.1373 29 1 1.7475 -1.7705 -1.2079 30 1 3.1776 1.4353 -1.9332 31 1 4.2925 1.2861 -0.5355 32 1 6.1084 0.5180 -1.9226 33 1 5.3065 1.6803 -3.0316 34 1 5.6360 -0.8831 -3.8274 35 1 4.0801 -0.0588 -4.1513 36 1 2.4410 -2.6871 -2.4764 37 1 2.2941 -1.3126 -3.5977 38 1 2.7409 -3.3487 -4.8814 39 1 4.1670 -2.2863 -4.9602 40 1 4.1646 -5.2925 -5.3055 41 1 5.5908 -4.2303 -5.3851 42 1 6.8313 -7.4784 -6.5990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339051603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:10 Heat of formation + Delta-G solvation = -128.322071 kcal Electronic energy + Delta-G solvation = -19898.485034 eV Core-core repulsion = 16877.131553 eV Total energy + Delta-G solvation = -3021.353480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83980 -38.58815 -37.97420 -35.00153 -33.55956 -33.18909 -30.61423 -29.83018 -28.29612 -26.36283 -24.52715 -23.89170 -22.85252 -21.75695 -20.26450 -18.62136 -17.61760 -17.33641 -17.20618 -16.83116 -16.42486 -16.29229 -15.92377 -15.45248 -14.93013 -14.76928 -14.37761 -13.88317 -13.78022 -13.58548 -13.31840 -13.08967 -12.84174 -12.80687 -12.69988 -12.60049 -12.24452 -12.10381 -12.01532 -11.83186 -11.71982 -11.52654 -11.33935 -11.24672 -10.90127 -10.84801 -10.18815 -9.05108 -8.32083 -6.44214 1.39280 1.42522 1.54899 2.35268 2.98709 3.01438 3.24392 3.50275 3.65132 3.79218 3.92452 4.04468 4.16800 4.20936 4.27394 4.35010 4.41024 4.49278 4.55158 4.57206 4.64359 4.68969 4.81191 4.86428 4.90902 4.95219 5.00130 5.05255 5.07254 5.18103 5.20609 5.27512 5.34888 5.46352 5.55398 5.97185 6.17371 6.23109 6.57007 6.86192 6.87450 7.28178 8.80438 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.004126 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.762142 B = 6783.847043 C = 7094.295815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 H 0.100 0.900 4 O -0.581 6.581 5 C -0.161 4.161 6 C 0.076 3.924 7 H 0.068 0.932 8 C -0.127 4.127 9 C -0.124 4.124 10 C 0.039 3.961 11 N -0.544 5.544 12 C 0.066 3.934 13 C 0.055 3.945 14 O -0.396 6.396 15 C 0.209 3.791 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.385 0.615 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.033 0.967 40 H -0.016 1.016 41 H -0.020 1.020 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 17.208 9.315 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.047 3.953 3 H 0.117 0.883 4 O -0.389 6.389 5 C -0.200 4.200 6 C -0.031 4.031 7 H 0.086 0.914 8 C -0.166 4.166 9 C -0.162 4.162 10 C -0.088 4.088 11 N -0.268 5.268 12 C -0.062 4.062 13 C -0.022 4.022 14 O -0.315 6.315 15 C 0.134 3.866 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.571 5.571 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.234 0.766 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.002 0.998 41 H -0.002 1.002 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.317 17.265 9.589 22.281 hybrid contribution -0.284 -0.803 -0.880 1.224 sum -10.601 16.462 8.709 21.429 Atomic orbital electron populations 1.22471 0.95200 1.03030 1.03184 1.21919 0.93489 0.96393 0.83469 0.88255 1.86542 1.73944 1.33204 1.45188 1.22871 0.95332 1.01929 0.99849 1.22383 0.94116 0.93095 0.93522 0.91403 1.22839 0.98007 0.95474 1.00245 1.22675 0.98461 0.97755 0.97322 1.23048 0.98118 0.92309 0.95349 1.63542 1.26736 1.28436 1.08090 1.22305 0.92483 0.96151 0.95244 1.22650 0.93709 0.89694 0.96196 1.87906 1.66373 1.42609 1.34627 1.19786 0.91003 0.87959 0.87827 1.21380 1.30289 1.12633 0.94122 0.92295 1.25963 0.97515 1.00066 0.95621 1.70073 1.44005 1.36613 1.06402 0.85182 0.77903 0.78019 0.78297 1.19076 1.19769 1.19068 0.91951 0.91685 0.90688 0.76593 0.89954 0.91207 0.89834 0.90130 0.91732 0.88878 0.93055 0.92824 0.90017 0.90961 0.93570 0.94856 0.99805 1.00216 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.49 71.98 0.68 -1.51 16 2 C 0.11 1.68 3.49 30.59 0.11 1.79 16 3 H 0.10 1.50 7.23 -2.39 -0.02 1.48 16 4 O -0.58 -11.25 12.83 -148.98 -1.91 -13.16 16 5 C -0.16 -2.97 3.07 30.60 0.09 -2.88 16 6 C 0.08 1.85 3.41 45.26 0.15 2.00 16 7 H 0.07 1.95 7.75 -2.39 -0.02 1.94 16 8 C -0.13 -2.43 5.41 31.77 0.17 -2.25 16 9 C -0.12 -2.68 7.08 31.98 0.23 -2.46 16 10 C 0.04 1.10 5.48 86.77 0.48 1.58 16 11 N -0.54 -16.90 5.15 -860.55 -4.43 -21.33 16 12 C 0.07 1.98 4.06 86.30 0.35 2.33 16 13 C 0.05 2.14 6.01 71.98 0.43 2.58 16 14 O -0.40 -20.54 10.27 -148.98 -1.53 -22.07 16 15 C 0.21 12.36 5.69 71.24 0.41 12.76 16 16 C -0.55 -33.98 9.43 25.60 0.24 -33.74 16 17 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 18 C 0.01 0.39 5.46 84.65 0.46 0.86 16 19 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 20 Si 0.98 45.69 29.54 68.60 2.03 47.71 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.39 5.41 9.03 -74.06 -0.67 4.74 16 28 H 0.08 1.33 6.95 -2.39 -0.02 1.31 16 29 H 0.07 1.41 6.29 -2.39 -0.01 1.40 16 30 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.05 1.33 7.71 -2.39 -0.02 1.31 16 36 H 0.08 2.47 6.32 -2.38 -0.02 2.45 16 37 H 0.07 1.69 6.75 -2.39 -0.02 1.67 16 38 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.03 1.30 7.14 -2.38 -0.02 1.28 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.26 330.91 -1.45 -73.71 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.31 Total: 11.20 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.80 Total: -18.95 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -4.15 Total: -78.44 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -3.44 Total: -35.23 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.26 -1.45 -73.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339051603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.614 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds