Wall clock time and date at job start Mon Mar 30 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47039 * 2 1 4 4 O 1.42902 * 109.47427 * 240.00443 * 2 1 3 5 5 C 1.52995 * 109.47372 * 120.00227 * 2 1 3 6 6 C 1.53001 * 109.47333 * 185.89124 * 5 2 1 7 7 H 1.09002 * 109.87500 * 52.85072 * 6 5 2 8 8 C 1.54310 * 109.89243 * 291.65063 * 6 5 2 9 9 C 1.55139 * 103.02138 * 218.30971 * 8 6 5 10 10 C 1.54905 * 101.64945 * 35.65147 * 9 8 6 11 11 N 1.47440 * 109.88808 * 173.87502 * 6 5 2 12 12 C 1.46898 * 111.00149 * 356.15328 * 11 6 5 13 13 C 1.53003 * 109.47103 * 176.12592 * 12 11 6 14 14 O 1.42894 * 109.47332 * 65.00123 * 13 12 11 15 15 C 1.42898 * 114.00357 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47597 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00460 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00475 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99823 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47220 * 89.99899 * 20 18 16 22 22 H 1.48504 * 109.47238 * 209.99983 * 20 18 16 23 23 H 1.48508 * 109.46997 * 329.99830 * 20 18 16 24 24 H 1.08999 * 109.47115 * 299.99824 * 1 2 3 25 25 H 1.09000 * 109.47127 * 59.99989 * 1 2 3 26 26 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 27 27 H 0.96705 * 113.99549 * 300.00277 * 4 2 1 28 28 H 1.09006 * 109.47112 * 305.89399 * 5 2 1 29 29 H 1.08996 * 109.47160 * 65.88760 * 5 2 1 30 30 H 1.09003 * 110.70406 * 336.69384 * 8 6 5 31 31 H 1.08996 * 110.70963 * 99.92362 * 8 6 5 32 32 H 1.08997 * 110.99111 * 277.56046 * 9 8 6 33 33 H 1.09001 * 110.98813 * 153.74422 * 9 8 6 34 34 H 1.09006 * 110.36877 * 204.09999 * 10 9 8 35 35 H 1.08999 * 110.37332 * 81.76513 * 10 9 8 36 36 H 1.08994 * 109.47208 * 296.12650 * 12 11 6 37 37 H 1.09004 * 109.47210 * 56.12559 * 12 11 6 38 38 H 1.09003 * 109.46852 * 185.00171 * 13 12 11 39 39 H 1.09003 * 109.47053 * 304.99870 * 13 12 11 40 40 H 1.09004 * 109.46997 * 299.99797 * 15 14 13 41 41 H 1.09006 * 109.46860 * 59.99800 * 15 14 13 42 42 H 0.97001 * 120.00155 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5628 -0.5943 1.3254 7 1 3.8516 0.4540 1.2493 8 6 4.2150 -1.4060 0.1866 9 6 5.4717 -2.0124 0.8648 10 6 4.9506 -2.2908 2.2968 11 7 4.0500 -1.1576 2.5979 12 6 2.9304 -1.5861 3.4469 13 6 3.4755 -2.2512 4.7124 14 8 4.1900 -1.2866 5.4875 15 6 4.7436 -1.8079 6.6974 16 6 5.4714 -0.7107 7.4305 17 1 5.5079 0.2851 7.0139 18 6 6.0915 -0.9782 8.6325 19 7 6.7271 -0.0208 9.2720 20 14 6.0302 -2.7010 9.3520 21 1 7.1929 -3.4839 8.8618 22 1 6.0771 -2.6205 10.8341 23 1 4.7716 -3.3683 8.9321 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7210 -1.5952 -1.2330 28 1 1.5931 -0.2720 2.1361 29 1 1.7653 -1.7748 1.1980 30 1 3.5450 -2.1938 -0.1578 31 1 4.4996 -0.7529 -0.6383 32 1 6.2917 -1.2946 0.8803 33 1 5.7733 -2.9369 0.3724 34 1 5.7796 -2.3150 3.0042 35 1 4.3998 -3.2309 2.3241 36 1 2.3303 -0.7188 3.7219 37 1 2.3115 -2.2976 2.9002 38 1 2.6474 -2.6481 5.2997 39 1 4.1467 -3.0641 4.4353 40 1 3.9421 -2.1958 7.3261 41 1 5.4413 -2.6114 6.4611 42 1 7.1637 -0.2092 10.1175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339051605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:15 Heat of formation + Delta-G solvation = -122.147502 kcal Electronic energy + Delta-G solvation = -19985.905829 eV Core-core repulsion = 16964.820098 eV Total energy + Delta-G solvation = -3021.085731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88878 -38.67879 -37.92284 -34.94001 -33.64381 -33.08588 -30.70813 -30.27507 -28.44780 -26.35671 -24.11408 -23.85370 -22.61398 -21.86432 -20.35996 -19.01386 -17.76295 -17.31019 -17.24761 -16.60262 -16.43229 -16.31511 -15.95351 -15.40372 -14.78829 -14.71230 -14.47029 -14.30526 -13.70970 -13.64079 -13.33070 -13.12799 -12.96702 -12.87347 -12.63313 -12.60966 -12.12638 -11.96188 -11.89084 -11.78963 -11.67530 -11.54060 -11.41139 -11.29917 -10.92333 -10.79524 -10.30477 -9.03833 -8.37397 -6.45314 1.31689 1.35443 1.46309 2.28929 2.94801 2.97247 3.17144 3.49012 3.75979 3.77439 3.87133 4.02578 4.19666 4.24685 4.28240 4.32304 4.44577 4.48965 4.51814 4.58516 4.61248 4.64855 4.69994 4.89473 4.91101 4.97665 5.02675 5.05672 5.09279 5.11341 5.22969 5.27405 5.35236 5.44118 5.47618 5.94139 6.18808 6.24715 6.59152 6.80385 6.91777 7.19507 8.80157 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.034062 B = 0.004058 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.844541 B = 6898.769707 C = 7195.106097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H 0.086 0.914 4 O -0.571 6.571 5 C -0.161 4.161 6 C 0.074 3.926 7 H 0.062 0.938 8 C -0.108 4.108 9 C -0.131 4.131 10 C 0.042 3.958 11 N -0.546 5.546 12 C 0.062 3.938 13 C 0.047 3.953 14 O -0.394 6.394 15 C 0.180 3.820 16 C -0.545 4.545 17 H 0.026 0.974 18 C 0.012 3.988 19 N -0.943 5.943 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.245 1.245 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.384 0.616 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.011 0.989 41 H 0.006 0.994 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -8.733 -20.904 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.104 0.896 4 O -0.378 6.378 5 C -0.199 4.199 6 C -0.034 4.034 7 H 0.080 0.920 8 C -0.147 4.147 9 C -0.169 4.169 10 C -0.085 4.085 11 N -0.271 5.271 12 C -0.065 4.065 13 C -0.030 4.030 14 O -0.314 6.314 15 C 0.104 3.896 16 C -0.582 4.582 17 H 0.045 0.955 18 C -0.186 4.186 19 N -0.583 5.583 20 Si 0.779 3.221 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.169 1.169 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.233 0.767 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.023 0.977 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.761 -7.527 -20.622 24.904 hybrid contribution -0.282 -1.307 0.698 1.508 sum -12.043 -8.833 -19.924 24.900 Atomic orbital electron populations 1.22440 0.95342 1.03168 1.02769 1.21770 0.93342 0.96152 0.83699 0.89555 1.86602 1.77261 1.30012 1.43923 1.22856 0.95247 1.02084 0.99715 1.22427 0.94050 0.98984 0.87948 0.92012 1.22708 0.95859 0.99334 0.96769 1.22754 0.98323 1.01631 0.94202 1.22999 0.96088 0.92441 0.97006 1.63577 1.17404 1.30836 1.15270 1.22336 0.92774 0.99774 0.91632 1.22825 0.95383 0.91931 0.92836 1.87977 1.71753 1.36810 1.34822 1.20276 0.92308 0.93872 0.83133 1.21168 1.34337 0.96714 1.06022 0.95530 1.25868 0.93573 1.02782 0.96340 1.70041 1.35778 1.35428 1.17047 0.85581 0.80382 0.78179 0.77999 1.18443 1.19640 1.16867 0.91523 0.91887 0.91302 0.76681 0.90636 0.90084 0.89785 0.90638 0.92195 0.89096 0.93135 0.92591 0.90626 0.90382 0.92508 0.93624 0.97141 0.97662 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.53 71.98 0.69 -1.43 16 2 C 0.11 1.64 3.57 30.59 0.11 1.75 16 3 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 4 O -0.57 -8.32 10.98 -148.98 -1.64 -9.96 16 5 C -0.16 -2.73 3.12 30.59 0.10 -2.64 16 6 C 0.07 1.71 3.44 45.26 0.16 1.87 16 7 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 8 C -0.11 -2.05 4.86 31.77 0.15 -1.90 16 9 C -0.13 -2.85 7.08 31.98 0.23 -2.62 16 10 C 0.04 1.14 5.26 86.77 0.46 1.60 16 11 N -0.55 -16.36 5.22 -860.56 -4.49 -20.85 16 12 C 0.06 1.74 4.10 86.30 0.35 2.10 16 13 C 0.05 1.63 5.86 71.98 0.42 2.06 16 14 O -0.39 -19.22 10.27 -148.98 -1.53 -20.75 16 15 C 0.18 9.38 4.76 71.24 0.34 9.72 16 16 C -0.54 -34.43 9.99 25.60 0.26 -34.17 16 17 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 18 C 0.01 0.73 5.47 84.65 0.46 1.20 16 19 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 20 Si 0.96 44.24 27.47 68.60 1.88 46.12 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.38 2.99 8.66 -74.05 -0.64 2.35 16 28 H 0.08 1.43 6.30 -2.38 -0.02 1.42 16 29 H 0.08 1.13 6.89 -2.39 -0.02 1.12 16 30 H 0.08 1.24 6.84 -2.39 -0.02 1.23 16 31 H 0.07 1.47 7.98 -2.39 -0.02 1.45 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.68 8.12 -2.38 -0.02 1.66 16 35 H 0.06 1.31 7.42 -2.39 -0.02 1.29 16 36 H 0.08 2.21 6.85 -2.39 -0.02 2.20 16 37 H 0.08 1.61 6.43 -2.38 -0.02 1.60 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.49 6.63 -2.39 -0.02 1.48 16 40 H 0.01 0.54 7.20 -2.38 -0.02 0.52 16 41 H 0.01 0.28 7.57 -2.38 -0.02 0.26 16 42 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -74.89 324.09 -1.47 -76.36 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.29 Total: 12.03 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.72 Total: -22.48 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -4.19 Total: -81.32 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -3.17 Total: -30.71 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -74.89 -1.47 -76.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339051605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.787 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds