Wall clock time and date at job start Mon Mar 30 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99945 * 2 1 4 4 H 1.08996 * 109.50474 * 330.07040 * 3 2 1 5 5 C 1.53033 * 109.50644 * 90.19774 * 3 2 1 6 6 N 1.46851 * 109.52633 * 60.75678 * 5 3 2 7 7 C 1.46903 * 110.99971 * 185.84250 * 6 5 3 8 8 C 1.53000 * 109.47025 * 284.17899 * 7 6 5 9 9 O 1.42904 * 109.47176 * 66.29810 * 8 7 6 10 10 C 1.42897 * 114.00304 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47011 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00487 * 359.97438 * 11 10 9 13 13 C 1.37887 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00082 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99707 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47063 * 90.00172 * 15 13 11 17 17 H 1.48499 * 109.47044 * 209.99969 * 15 13 11 18 18 H 1.48499 * 109.47127 * 329.99750 * 15 13 11 19 19 C 1.46843 * 111.19658 * 61.74555 * 6 5 3 20 20 C 1.53036 * 109.52421 * 298.26304 * 19 6 5 21 21 C 1.53120 * 109.28326 * 59.17464 * 20 19 6 22 22 H 1.08998 * 109.56950 * 62.28563 * 21 20 19 23 23 C 1.52998 * 109.52503 * 182.44620 * 21 20 19 24 24 H 1.08994 * 109.47531 * 300.00203 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00474 * 1 2 3 26 26 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46460 * 180.77640 * 5 3 2 28 28 H 1.09005 * 109.46241 * 300.75265 * 5 3 2 29 29 H 1.08996 * 109.47005 * 44.17812 * 7 6 5 30 30 H 1.08992 * 109.46603 * 164.18504 * 7 6 5 31 31 H 1.08995 * 109.46950 * 186.29706 * 8 7 6 32 32 H 1.08996 * 109.47431 * 306.29757 * 8 7 6 33 33 H 1.08998 * 109.46971 * 300.00014 * 10 9 8 34 34 H 1.08996 * 109.47408 * 59.99767 * 10 9 8 35 35 H 0.97000 * 119.99606 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.46277 * 58.27201 * 19 6 5 37 37 H 1.08994 * 109.46687 * 178.25153 * 19 6 5 38 38 H 1.09014 * 109.50037 * 299.23413 * 20 19 6 39 39 H 1.08998 * 109.50786 * 179.12533 * 20 19 6 40 40 H 1.08994 * 109.47301 * 179.68561 * 23 21 20 41 41 H 1.09007 * 109.47199 * 299.68264 * 23 21 20 42 42 H 1.08997 * 109.47549 * 59.68134 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3448 2.0000 -0.5126 5 6 2.2226 1.7702 1.4425 6 7 3.1354 0.8456 2.1268 7 6 3.2539 1.1812 3.5520 8 6 4.1454 2.4142 3.7132 9 8 3.4966 3.5497 3.1371 10 6 4.2487 4.7607 3.2352 11 6 3.4737 5.8861 2.5998 12 1 2.5040 5.6956 2.1642 13 6 4.0026 7.1593 2.5745 14 7 3.3265 8.1414 2.0196 15 14 5.6796 7.4890 3.3286 16 1 6.7317 7.2995 2.2978 17 1 5.7288 8.8839 3.8354 18 1 5.9114 6.5457 4.4519 19 6 4.4534 0.8247 1.4797 20 6 4.3077 0.3318 0.0382 21 6 3.3601 1.2640 -0.7217 22 1 3.7852 2.2670 -0.7570 23 6 3.1624 0.7419 -2.1461 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.6531 2.7716 1.4418 28 1 1.2652 1.7870 1.9634 29 1 2.2651 1.3921 3.9590 30 1 3.6958 0.3410 4.0875 31 1 4.3246 2.5969 4.7726 32 1 5.0960 2.2438 3.2079 33 1 4.4297 4.9919 4.2849 34 1 5.2017 4.6393 2.7203 35 1 3.6988 9.0369 2.0016 36 1 4.8736 1.8305 1.4787 37 1 5.1163 0.1548 2.0272 38 1 3.9005 -0.6795 0.0388 39 1 5.2839 0.3311 -0.4467 40 1 2.4834 1.4030 -2.6845 41 1 4.1238 0.7127 -2.6591 42 1 2.7395 -0.2620 -2.1098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339110508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:53 Heat of formation + Delta-G solvation = -94.000401 kcal Electronic energy + Delta-G solvation = -20735.297915 eV Core-core repulsion = 17715.432734 eV Total energy + Delta-G solvation = -3019.865181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64461 -37.48330 -35.98899 -34.12417 -32.63034 -30.03247 -29.78321 -27.92407 -26.66397 -25.82775 -23.16686 -22.52567 -21.83433 -20.84206 -19.18614 -16.92656 -16.24458 -15.96517 -15.70985 -15.44164 -15.00412 -14.67809 -14.37491 -14.00966 -13.60029 -13.46126 -13.29588 -12.70736 -12.53808 -12.17424 -12.06320 -11.92711 -11.82591 -11.54403 -11.26739 -11.02912 -10.92719 -10.88262 -10.68120 -10.46594 -10.40060 -9.95739 -9.90391 -9.27606 -9.18890 -8.89836 -8.53382 -7.75879 -6.17535 -4.16917 3.19866 3.27405 3.28631 3.96749 4.30061 4.31467 4.63699 4.91706 4.98617 5.09705 5.14085 5.40201 5.41690 5.47576 5.51591 5.57492 5.60917 5.71717 5.72429 5.77047 5.83319 5.86483 5.93582 5.95699 6.08452 6.14580 6.16833 6.28297 6.32394 6.39420 6.50257 6.59793 6.67547 6.93563 7.30912 7.42957 7.53543 7.61321 7.93583 8.58940 8.92366 9.41827 10.95274 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.005635 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.821222 B = 4967.566487 C = 5240.962091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.098 3.902 4 H 0.061 0.939 5 C 0.028 3.972 6 N -0.519 5.519 7 C 0.058 3.942 8 C 0.017 3.983 9 O -0.376 6.376 10 C 0.168 3.832 11 C -0.519 4.519 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.049 3.951 20 C -0.103 4.103 21 C -0.091 4.091 22 H 0.081 0.919 23 C -0.141 4.141 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.002 0.998 34 H -0.004 1.004 35 H 0.267 0.733 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -16.189 -3.207 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.040 3.960 4 H 0.079 0.921 5 C -0.100 4.100 6 N -0.242 5.242 7 C -0.070 4.070 8 C -0.062 4.062 9 O -0.295 6.295 10 C 0.093 3.907 11 C -0.557 4.557 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.532 5.532 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.079 4.079 20 C -0.141 4.141 21 C -0.110 4.110 22 H 0.099 0.901 23 C -0.198 4.198 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.314 -16.632 -3.379 16.974 hybrid contribution 1.295 1.522 0.698 2.117 sum 0.980 -15.109 -2.680 15.377 Atomic orbital electron populations 1.22690 0.82346 1.01883 0.99509 1.87922 1.18261 1.27528 1.94910 1.22236 0.94255 0.84421 0.95095 0.92135 1.22774 0.97104 0.96432 0.93695 1.62125 1.10245 1.50408 1.01454 1.22260 1.00490 0.94302 0.89942 1.23189 0.96744 0.88928 0.97320 1.87918 1.45632 1.16705 1.79271 1.20592 0.91870 0.82912 0.95358 1.20856 1.06169 0.90751 1.37907 0.90042 1.24762 0.97469 0.95704 0.94924 1.69870 1.38124 1.01043 1.44178 0.86865 0.84750 0.78041 0.80180 1.19937 1.20721 1.19187 1.22130 0.90886 0.99875 0.94962 1.21520 0.98325 1.00107 0.94113 1.21294 0.94667 1.00206 0.94840 0.90055 1.21728 1.01097 1.01580 0.95409 0.94324 0.94786 0.90343 0.89833 0.91396 0.90368 0.90038 0.94251 0.93881 0.98067 0.98667 0.92330 0.94017 0.91466 0.90703 0.92177 0.93175 0.93024 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.47 16 2 O -0.37 -5.23 8.91 -35.23 -0.31 -5.54 16 3 C 0.10 1.44 2.41 -26.65 -0.06 1.38 16 4 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 5 C 0.03 0.46 4.62 -3.83 -0.02 0.45 16 6 N -0.52 -8.06 4.74 -234.67 -1.11 -9.17 16 7 C 0.06 0.87 6.01 -3.82 -0.02 0.85 16 8 C 0.02 0.30 5.52 37.16 0.21 0.50 16 9 O -0.38 -8.38 7.55 -35.23 -0.27 -8.65 16 10 C 0.17 4.20 4.76 36.00 0.17 4.37 16 11 C -0.52 -15.12 9.99 -34.44 -0.34 -15.47 16 12 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 15 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 19 C 0.05 0.72 4.49 -3.84 -0.02 0.70 16 20 C -0.10 -1.36 5.22 -26.65 -0.14 -1.50 16 21 C -0.09 -1.26 2.62 -90.50 -0.24 -1.50 16 22 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 23 C -0.14 -1.66 9.03 37.16 0.34 -1.33 16 24 H 0.04 0.45 7.87 -51.93 -0.41 0.04 16 25 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.68 5.80 -51.93 -0.30 1.38 16 28 H 0.07 1.14 7.69 -51.93 -0.40 0.74 16 29 H 0.08 1.20 7.87 -51.93 -0.41 0.79 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.73 6.05 -51.93 -0.31 0.41 16 33 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 34 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.04 0.69 6.45 -51.92 -0.33 0.36 16 37 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 38 H 0.07 1.03 7.80 -51.92 -0.40 0.62 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.06 0.73 7.63 -51.93 -0.40 0.34 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -30.73 323.64 -7.38 -38.11 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.53 Total: -1.74 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 0.87 Total: -8.04 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.34 Total: -35.64 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.58 Total: -14.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.73 -7.38 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339110508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.895 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds