Wall clock time and date at job start Mon Mar 30 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99945 * 2 1 4 4 H 1.08996 * 109.50474 * 330.07040 * 3 2 1 5 5 C 1.53033 * 109.50644 * 90.19774 * 3 2 1 6 6 N 1.46851 * 109.52633 * 60.75678 * 5 3 2 7 7 C 1.46903 * 110.99971 * 185.84250 * 6 5 3 8 8 C 1.53000 * 109.47025 * 284.17899 * 7 6 5 9 9 O 1.42904 * 109.47176 * 66.29810 * 8 7 6 10 10 C 1.42897 * 114.00304 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47011 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00487 * 359.97438 * 11 10 9 13 13 C 1.37887 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00082 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99707 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47063 * 90.00172 * 15 13 11 17 17 H 1.48499 * 109.47044 * 209.99969 * 15 13 11 18 18 H 1.48499 * 109.47127 * 329.99750 * 15 13 11 19 19 C 1.46843 * 111.19658 * 61.74555 * 6 5 3 20 20 C 1.53036 * 109.52421 * 298.26304 * 19 6 5 21 21 C 1.53120 * 109.28326 * 59.17464 * 20 19 6 22 22 H 1.08998 * 109.56950 * 62.28563 * 21 20 19 23 23 C 1.52998 * 109.52503 * 182.44620 * 21 20 19 24 24 H 1.08994 * 109.47531 * 300.00203 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00474 * 1 2 3 26 26 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46460 * 180.77640 * 5 3 2 28 28 H 1.09005 * 109.46241 * 300.75265 * 5 3 2 29 29 H 1.08996 * 109.47005 * 44.17812 * 7 6 5 30 30 H 1.08992 * 109.46603 * 164.18504 * 7 6 5 31 31 H 1.08995 * 109.46950 * 186.29706 * 8 7 6 32 32 H 1.08996 * 109.47431 * 306.29757 * 8 7 6 33 33 H 1.08998 * 109.46971 * 300.00014 * 10 9 8 34 34 H 1.08996 * 109.47408 * 59.99767 * 10 9 8 35 35 H 0.97000 * 119.99606 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.46277 * 58.27201 * 19 6 5 37 37 H 1.08994 * 109.46687 * 178.25153 * 19 6 5 38 38 H 1.09014 * 109.50037 * 299.23413 * 20 19 6 39 39 H 1.08998 * 109.50786 * 179.12533 * 20 19 6 40 40 H 1.08994 * 109.47301 * 179.68561 * 23 21 20 41 41 H 1.09007 * 109.47199 * 299.68264 * 23 21 20 42 42 H 1.08997 * 109.47549 * 59.68134 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3448 2.0000 -0.5126 5 6 2.2226 1.7702 1.4425 6 7 3.1354 0.8456 2.1268 7 6 3.2539 1.1812 3.5520 8 6 4.1454 2.4142 3.7132 9 8 3.4966 3.5497 3.1371 10 6 4.2487 4.7607 3.2352 11 6 3.4737 5.8861 2.5998 12 1 2.5040 5.6956 2.1642 13 6 4.0026 7.1593 2.5745 14 7 3.3265 8.1414 2.0196 15 14 5.6796 7.4890 3.3286 16 1 6.7317 7.2995 2.2978 17 1 5.7288 8.8839 3.8354 18 1 5.9114 6.5457 4.4519 19 6 4.4534 0.8247 1.4797 20 6 4.3077 0.3318 0.0382 21 6 3.3601 1.2640 -0.7217 22 1 3.7852 2.2670 -0.7570 23 6 3.1624 0.7419 -2.1461 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.6531 2.7716 1.4418 28 1 1.2652 1.7870 1.9634 29 1 2.2651 1.3921 3.9590 30 1 3.6958 0.3410 4.0875 31 1 4.3246 2.5969 4.7726 32 1 5.0960 2.2438 3.2079 33 1 4.4297 4.9919 4.2849 34 1 5.2017 4.6393 2.7203 35 1 3.6988 9.0369 2.0016 36 1 4.8736 1.8305 1.4787 37 1 5.1163 0.1548 2.0272 38 1 3.9005 -0.6795 0.0388 39 1 5.2839 0.3311 -0.4467 40 1 2.4834 1.4030 -2.6845 41 1 4.1238 0.7127 -2.6591 42 1 2.7395 -0.2620 -2.1098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339110508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:52 Heat of formation + Delta-G solvation = -115.481704 kcal Electronic energy + Delta-G solvation = -20736.229414 eV Core-core repulsion = 17715.432734 eV Total energy + Delta-G solvation = -3020.796680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85824 -38.93107 -37.34315 -35.38569 -34.74448 -31.30062 -31.14310 -29.75483 -27.78320 -26.99024 -24.34970 -24.14381 -23.54310 -22.06110 -20.39271 -19.06455 -17.61192 -17.39935 -17.08231 -16.74573 -16.41767 -16.17573 -15.76504 -15.45145 -14.92952 -14.74067 -14.53698 -14.49986 -13.73935 -13.64869 -13.32153 -13.28015 -13.03548 -12.87410 -12.84792 -12.55949 -12.36865 -12.20838 -12.07035 -11.85920 -11.58234 -11.49664 -11.39496 -11.06658 -10.95669 -10.41866 -10.28250 -9.07863 -8.40928 -6.48614 1.29160 1.31542 1.42281 2.24940 2.79422 2.91635 3.04963 3.21448 3.78382 3.84084 3.99161 4.15483 4.23651 4.27626 4.38384 4.44056 4.50258 4.52760 4.57562 4.62115 4.65997 4.73388 4.82604 4.84885 4.89023 4.91495 4.92531 5.01207 5.06549 5.10509 5.20762 5.23569 5.35469 5.40964 5.55874 5.88607 6.09089 6.21850 6.44767 6.54911 6.68661 7.15788 8.75814 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.005635 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.821222 B = 4967.566487 C = 5240.962091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.102 3.898 4 H 0.055 0.945 5 C 0.034 3.966 6 N -0.517 5.517 7 C 0.062 3.938 8 C 0.011 3.989 9 O -0.394 6.394 10 C 0.180 3.820 11 C -0.541 4.541 12 H 0.031 0.969 13 C 0.016 3.984 14 N -0.940 5.940 15 Si 0.952 3.048 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.249 1.249 19 C 0.048 3.952 20 C -0.096 4.096 21 C -0.095 4.095 22 H 0.061 0.939 23 C -0.133 4.133 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.273 0.727 36 H 0.019 0.981 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -17.990 -2.648 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.293 6.293 3 C 0.044 3.956 4 H 0.073 0.927 5 C -0.094 4.094 6 N -0.240 5.240 7 C -0.067 4.067 8 C -0.068 4.068 9 O -0.314 6.314 10 C 0.104 3.896 11 C -0.579 4.579 12 H 0.049 0.951 13 C -0.183 4.183 14 N -0.579 5.579 15 Si 0.773 3.227 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.173 1.173 19 C -0.079 4.079 20 C -0.134 4.134 21 C -0.114 4.114 22 H 0.079 0.921 23 C -0.190 4.190 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.603 -18.461 -2.819 18.744 hybrid contribution 0.557 2.031 0.502 2.165 sum 2.159 -16.431 -2.316 16.733 Atomic orbital electron populations 1.22870 0.80957 1.03376 0.99713 1.87893 1.19797 1.26730 1.94873 1.22111 0.94994 0.84778 0.93742 0.92666 1.22615 0.96660 0.94823 0.95337 1.62194 1.10669 1.49348 1.01753 1.22380 1.00009 0.94276 0.89991 1.23501 0.97504 0.87929 0.97821 1.87930 1.46225 1.17167 1.80076 1.20270 0.91429 0.82947 0.94932 1.21096 1.05007 0.93102 1.38669 0.95054 1.25786 1.02360 0.95019 0.95090 1.70022 1.40583 1.01807 1.45471 0.85662 0.78583 0.78541 0.79895 1.18467 1.19739 1.17252 1.22211 0.90403 0.99138 0.96178 1.21491 0.99055 0.99567 0.93268 1.21303 0.94184 0.99563 0.96330 0.92057 1.21659 1.01935 1.01447 0.93956 0.94942 0.93810 0.88179 0.93825 0.92408 0.91075 0.86552 0.92934 0.92950 0.97493 0.97815 0.91802 0.96327 0.89215 0.90580 0.90312 0.93165 0.91626 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 113.37 1.23 1.82 16 2 O -0.37 -10.29 8.91 -148.98 -1.33 -11.62 16 3 C 0.10 3.04 2.41 30.65 0.07 3.12 16 4 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 5 C 0.03 1.18 4.62 86.32 0.40 1.58 16 6 N -0.52 -15.59 4.74 -896.37 -4.25 -19.84 16 7 C 0.06 1.75 6.01 86.30 0.52 2.27 16 8 C 0.01 0.36 5.52 71.98 0.40 0.75 16 9 O -0.39 -17.90 7.55 -148.98 -1.13 -19.03 16 10 C 0.18 9.02 4.76 71.23 0.34 9.36 16 11 C -0.54 -32.73 9.99 25.60 0.26 -32.48 16 12 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 13 C 0.02 0.93 5.47 84.66 0.46 1.39 16 14 N -0.94 -58.84 13.96 21.45 0.30 -58.55 16 15 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 19 C 0.05 1.34 4.49 86.33 0.39 1.72 16 20 C -0.10 -2.39 5.22 30.65 0.16 -2.23 16 21 C -0.10 -2.60 2.62 -10.71 -0.03 -2.63 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 C -0.13 -2.96 9.03 71.98 0.65 -2.31 16 24 H 0.03 0.74 7.87 -2.39 -0.02 0.72 16 25 H 0.04 0.87 8.09 -2.39 -0.02 0.85 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.87 5.80 -2.39 -0.01 1.86 16 28 H 0.06 2.04 7.69 -2.38 -0.02 2.02 16 29 H 0.07 2.13 7.87 -2.39 -0.02 2.11 16 30 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.68 6.05 -2.39 -0.01 1.66 16 33 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 34 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.02 0.60 6.45 -2.38 -0.02 0.59 16 37 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 38 H 0.08 1.91 7.80 -2.38 -0.02 1.89 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.06 1.41 7.63 -2.39 -0.02 1.39 16 Total: -1.00 -68.23 323.64 1.23 -67.00 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.91 Total: 14.33 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.84 Total: -17.62 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -3.95 Total: -78.39 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -2.45 Total: -30.65 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -68.23 1.23 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339110508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.482 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds