Wall clock time and date at job start Mon Mar 30 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.54511 * 2 1 4 4 C 1.53097 * 109.51014 * 239.89346 * 2 1 3 5 5 N 1.47012 * 109.29453 * 183.24027 * 4 2 1 6 6 C 1.46905 * 111.03185 * 182.34522 * 5 4 2 7 7 C 1.52998 * 109.46929 * 46.34333 * 6 5 4 8 8 O 1.42903 * 109.47126 * 64.99963 * 7 6 5 9 9 C 1.42902 * 113.99811 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46898 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00361 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99795 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00111 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99928 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47327 * 90.00305 * 14 12 10 16 16 H 1.48503 * 109.46916 * 210.00292 * 14 12 10 17 17 H 1.48500 * 109.47261 * 329.99694 * 14 12 10 18 18 C 1.47014 * 110.75171 * 58.54996 * 5 4 2 19 19 H 1.08998 * 109.51158 * 61.40783 * 18 5 4 20 20 C 1.53006 * 109.50362 * 181.49281 * 18 5 4 21 21 C 1.53100 * 109.29034 * 301.44736 * 18 5 4 22 22 H 1.09005 * 109.50569 * 296.84887 * 21 18 5 23 23 C 1.53002 * 109.50385 * 176.76378 * 21 18 5 24 24 O 1.43006 * 109.25837 * 56.83078 * 21 18 5 25 25 H 1.09001 * 109.47052 * 299.89167 * 1 2 3 26 26 H 1.09001 * 109.47037 * 59.89125 * 1 2 3 27 27 H 1.08996 * 109.47125 * 179.88907 * 1 2 3 28 28 H 1.09005 * 109.50456 * 303.15452 * 4 2 1 29 29 H 1.09001 * 109.50595 * 63.23661 * 4 2 1 30 30 H 1.09004 * 109.46707 * 166.33974 * 6 5 4 31 31 H 1.08993 * 109.47256 * 286.33754 * 6 5 4 32 32 H 1.09001 * 109.47094 * 184.99119 * 7 6 5 33 33 H 1.08996 * 109.47187 * 304.99321 * 7 6 5 34 34 H 1.09010 * 109.47018 * 299.99343 * 9 8 7 35 35 H 1.08998 * 109.47495 * 59.99262 * 9 8 7 36 36 H 0.97002 * 120.00220 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.47002 * 179.90813 * 20 18 5 38 38 H 1.08993 * 109.46955 * 299.91250 * 20 18 5 39 39 H 1.09000 * 109.47050 * 59.91079 * 20 18 5 40 40 H 1.09006 * 109.46887 * 60.00411 * 23 21 18 41 41 H 1.09003 * 109.47183 * 179.97438 * 23 21 18 42 42 H 1.09002 * 109.47080 * 300.00206 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2484 5 7 3.5093 -0.7893 -1.2049 6 6 4.0446 -1.4287 -2.4143 7 6 3.3600 -0.8386 -3.6488 8 8 3.7028 0.5435 -3.7686 9 6 3.1114 1.1934 -4.8955 10 6 3.5379 2.6386 -4.9228 11 1 4.1944 3.0225 -4.1561 12 6 3.0898 3.4707 -5.9267 13 7 3.4615 4.7320 -5.9503 14 14 1.9546 2.8066 -7.2533 15 1 0.5424 2.9728 -6.8252 16 1 2.1800 3.5533 -8.5170 17 1 2.2392 1.3657 -7.4725 18 6 3.9640 -1.4884 0.0058 19 1 3.5873 -2.5112 -0.0013 20 6 5.4935 -1.5075 0.0408 21 6 3.4334 -0.7568 1.2416 22 1 3.8540 0.2482 1.2782 23 6 3.8357 -1.5251 2.5021 24 8 2.0076 -0.6762 1.1662 25 1 -0.3633 0.5122 0.8910 26 1 -0.3633 0.5155 -0.8890 27 1 -0.3633 -1.0276 -0.0020 28 1 1.6332 -1.7342 -1.2760 29 1 1.7268 -0.1798 -2.1390 30 1 5.1184 -1.2508 -2.4744 31 1 3.8560 -2.5014 -2.3720 32 1 3.6916 -1.3736 -4.5387 33 1 2.2793 -0.9375 -3.5470 34 1 3.4374 0.7006 -5.8115 35 1 2.0256 1.1367 -4.8192 36 1 3.1465 5.3173 -6.6568 37 1 5.8300 -2.0245 0.9394 38 1 5.8705 -2.0271 -0.8401 39 1 5.8696 -0.4845 0.0479 40 1 4.9225 -1.5895 2.5570 41 1 3.4582 -1.0036 3.3816 42 1 3.4136 -2.5295 2.4656 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339111958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:02 Heat of formation + Delta-G solvation = -88.550703 kcal Electronic energy + Delta-G solvation = -20422.391975 eV Core-core repulsion = 17402.763110 eV Total energy + Delta-G solvation = -3019.628864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03975 -37.25761 -35.67723 -34.30946 -32.61916 -30.97795 -29.32735 -28.81740 -27.44196 -25.24946 -23.88954 -21.84136 -21.55904 -21.03581 -19.92364 -16.92172 -16.64657 -16.24901 -15.79370 -15.59521 -14.81472 -14.60989 -14.45755 -14.16619 -13.49389 -13.17966 -13.14873 -12.98414 -12.51016 -12.39958 -12.20512 -12.13458 -12.05257 -11.70643 -11.63509 -11.31433 -11.21840 -10.92281 -10.81654 -10.74200 -10.37383 -10.27114 -9.85523 -9.38746 -9.16322 -8.83013 -8.45317 -8.14401 -6.10275 -4.08908 3.24137 3.31364 3.32454 3.67054 3.83779 4.35824 4.57803 4.69715 4.88680 4.94375 5.09278 5.20828 5.22193 5.31059 5.31788 5.37649 5.44456 5.45766 5.52476 5.64040 5.65391 5.70381 5.80942 5.85029 5.86731 5.90626 5.99575 6.05651 6.10359 6.16918 6.22734 6.29303 6.59547 6.99387 7.12816 7.16046 7.32407 7.60941 8.04431 8.68690 9.02895 9.49253 11.02872 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.004995 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.276134 B = 5603.709193 C = 5969.424144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.072 0.928 4 C 0.022 3.978 5 N -0.519 5.519 6 C 0.061 3.939 7 C 0.053 3.947 8 O -0.364 6.364 9 C 0.167 3.833 10 C -0.515 4.515 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.051 3.949 19 H 0.043 0.957 20 C -0.147 4.147 21 C 0.095 3.905 22 H 0.068 0.932 23 C -0.144 4.144 24 O -0.385 6.385 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.000 1.000 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -15.003 12.885 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.106 4.106 5 N -0.245 5.245 6 C -0.066 4.066 7 C -0.025 4.025 8 O -0.283 6.283 9 C 0.092 3.908 10 C -0.553 4.553 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.701 3.299 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.058 4.058 19 H 0.060 0.940 20 C -0.204 4.204 21 C 0.037 3.963 22 H 0.086 0.914 23 C -0.201 4.201 24 O -0.304 6.304 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.754 -14.322 13.052 19.456 hybrid contribution -0.946 -1.121 -1.365 2.004 sum -2.700 -15.443 11.686 19.553 Atomic orbital electron populations 1.21734 0.92946 1.02512 1.02809 1.22160 0.94572 0.96138 0.83925 0.91046 1.22906 0.88030 0.99502 1.00121 1.62143 1.08620 1.52456 1.01236 1.22177 1.01096 0.94614 0.88702 1.22483 0.97770 0.86392 0.95823 1.88036 1.72029 1.19119 1.49071 1.20599 0.92043 0.94003 0.84160 1.20884 1.30752 0.91273 1.12429 0.89889 1.24761 0.96106 0.94654 0.97401 1.69874 1.45048 1.04689 1.33814 0.86875 0.81603 0.79519 0.81876 1.19961 1.20791 1.19201 1.22325 0.96509 0.95760 0.91175 0.93957 1.21891 0.93655 1.03169 1.01690 1.22124 0.81296 0.99114 0.93783 0.91413 1.21811 1.01418 1.00484 0.96407 1.87919 1.20779 1.78581 1.43169 0.91709 0.90648 0.92250 0.94812 0.88428 0.89442 0.94325 0.93974 0.94160 0.98185 0.98688 0.92401 0.92044 0.92225 0.91219 0.90776 0.91755 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.57 37.16 0.36 -1.32 16 2 C 0.09 1.28 3.43 -26.68 -0.09 1.19 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.02 0.33 4.23 -3.71 -0.02 0.32 16 5 N -0.52 -8.03 4.63 -226.33 -1.05 -9.07 16 6 C 0.06 0.92 4.87 -3.82 -0.02 0.90 16 7 C 0.05 0.94 5.43 37.16 0.20 1.14 16 8 O -0.36 -8.50 10.27 -35.23 -0.36 -8.86 16 9 C 0.17 4.27 4.76 36.01 0.17 4.44 16 10 C -0.52 -15.42 9.99 -34.44 -0.34 -15.76 16 11 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 12 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 14 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 18 C 0.05 0.65 2.04 -67.60 -0.14 0.52 16 19 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 20 C -0.15 -1.61 8.62 37.16 0.32 -1.29 16 21 C 0.09 1.20 2.92 -26.68 -0.08 1.12 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.14 -1.38 9.29 37.16 0.35 -1.03 16 24 O -0.38 -5.48 10.11 -35.23 -0.36 -5.84 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 1.61 5.95 -51.93 -0.31 1.30 16 30 H 0.09 1.32 6.87 -51.93 -0.36 0.97 16 31 H 0.04 0.49 8.08 -51.93 -0.42 0.08 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.67 5.95 -51.93 -0.31 0.36 16 34 H 0.00 0.01 7.20 -51.92 -0.37 -0.36 16 35 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.06 0.53 6.53 -51.93 -0.34 0.19 16 38 H 0.06 0.64 6.61 -51.93 -0.34 0.30 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.58 6.52 -51.93 -0.34 0.25 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -32.21 324.99 -7.58 -39.78 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.42 Total: -2.94 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.61 Total: -7.74 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.28 Total: -36.07 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.72 Total: -14.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.21 -7.58 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339111958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.770 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds