Wall clock time and date at job start Mon Mar 30 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.89196 * 2 1 4 4 O 1.43243 * 109.82847 * 120.93116 * 2 1 3 5 5 C 1.43646 * 109.96628 * 117.80355 * 4 2 1 6 6 C 1.55206 * 105.26261 * 24.28573 * 5 4 2 7 7 C 1.54382 * 109.83183 * 239.06792 * 2 1 3 8 8 H 1.09005 * 110.84456 * 337.52416 * 7 2 1 9 9 N 1.46902 * 110.84626 * 100.93723 * 7 2 1 10 10 C 1.46890 * 111.00026 * 286.78902 * 9 7 2 11 11 C 1.52996 * 109.47594 * 286.41006 * 10 9 7 12 12 O 1.42906 * 109.46920 * 67.34980 * 11 10 9 13 13 C 1.46902 * 110.99812 * 50.74717 * 9 7 2 14 14 C 1.52993 * 109.46945 * 163.62171 * 13 9 7 15 15 C 1.53004 * 109.47241 * 179.97438 * 14 13 9 16 16 C 1.50704 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99482 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00152 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99549 * 180.27198 * 18 16 15 21 21 H 1.48498 * 109.46867 * 179.72443 * 20 18 16 22 22 H 1.48493 * 109.47428 * 299.72231 * 20 18 16 23 23 H 1.48500 * 109.47020 * 59.72637 * 20 18 16 24 24 H 1.09000 * 109.46703 * 180.93081 * 1 2 3 25 25 H 1.09003 * 109.46917 * 300.93416 * 1 2 3 26 26 H 1.09000 * 109.46988 * 60.93299 * 1 2 3 27 27 H 1.09007 * 110.30563 * 143.34214 * 5 4 2 28 28 H 1.08997 * 110.30772 * 265.40898 * 5 4 2 29 29 H 1.08999 * 111.30004 * 205.88130 * 6 5 4 30 30 H 1.09001 * 111.05271 * 81.64160 * 6 5 4 31 31 H 1.09000 * 109.47599 * 46.41259 * 10 9 7 32 32 H 1.09005 * 109.47160 * 166.41055 * 10 9 7 33 33 H 1.08998 * 109.47791 * 187.35451 * 11 10 9 34 34 H 1.09004 * 109.47382 * 307.35529 * 11 10 9 35 35 H 0.96699 * 113.99512 * 184.98358 * 12 11 10 36 36 H 1.09003 * 109.46875 * 43.62384 * 13 9 7 37 37 H 1.08996 * 109.46758 * 283.62241 * 13 9 7 38 38 H 1.09010 * 109.47295 * 59.99997 * 14 13 9 39 39 H 1.09000 * 109.47619 * 300.00104 * 14 13 9 40 40 H 1.08994 * 109.47042 * 60.00215 * 15 14 13 41 41 H 1.08996 * 109.46870 * 300.00319 * 15 14 13 42 42 H 0.96996 * 120.00146 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 8 2.0160 -0.6926 1.1559 5 6 2.7748 -1.8444 0.7546 6 6 3.2724 -1.5261 -0.6807 7 6 2.0539 -0.7465 -1.2457 8 1 1.3000 -1.4323 -1.6324 9 7 2.4762 0.2024 -2.2846 10 6 1.3146 0.8336 -2.9247 11 6 0.6287 -0.1764 -3.8467 12 8 0.0471 -1.2195 -3.0617 13 6 3.3885 1.2138 -1.7343 14 6 4.1190 1.9184 -2.8790 15 6 5.0687 2.9723 -2.3060 16 6 5.7878 3.6668 -3.4337 17 1 5.5879 3.3843 -4.4567 18 6 6.7019 4.6620 -3.1591 19 7 6.9457 5.0054 -1.9133 20 14 7.5877 5.5280 -4.5572 21 1 8.5058 6.5541 -4.0012 22 1 8.3691 4.5357 -5.3382 23 1 6.5923 6.1826 -5.4437 24 1 -0.3633 -1.0276 0.0167 25 1 -0.3633 0.5283 0.8815 26 1 -0.3633 0.4993 -0.8982 27 1 3.6211 -1.9924 1.4255 28 1 2.1406 -2.7308 0.7454 29 1 3.4527 -2.4387 -1.2487 30 1 4.1632 -0.8984 -0.6560 31 1 0.6118 1.1623 -2.1591 32 1 1.6439 1.6932 -3.5086 33 1 -0.1513 0.3254 -4.4193 34 1 1.3636 -0.6025 -4.5297 35 1 -0.3395 -1.9357 -3.5839 36 1 4.1158 0.7305 -1.0819 37 1 2.8174 1.9454 -1.1627 38 1 3.3916 2.4017 -3.5315 39 1 4.6900 1.1867 -3.4507 40 1 5.7961 2.4895 -1.6534 41 1 4.4973 3.7039 -1.7347 42 1 7.5889 5.7053 -1.7202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361552497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:00 Heat of formation + Delta-G solvation = -98.866888 kcal Electronic energy + Delta-G solvation = -20448.474764 eV Core-core repulsion = 17428.398556 eV Total energy + Delta-G solvation = -3020.076208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15412 -37.49918 -36.03168 -33.65339 -31.69410 -31.44778 -30.80328 -28.65369 -26.41645 -24.87417 -23.07393 -21.90063 -21.54054 -20.44065 -19.32178 -17.60835 -16.88976 -16.32446 -15.85324 -15.38104 -14.96308 -14.51401 -14.31018 -14.02474 -13.74147 -13.48070 -13.36102 -12.83062 -12.32916 -12.18243 -11.96926 -11.81487 -11.52809 -11.46427 -11.18054 -11.03792 -10.87013 -10.77346 -10.66166 -10.50504 -10.39689 -9.82988 -9.59599 -9.35453 -9.27406 -9.04895 -8.32089 -7.97902 -5.97264 -3.99604 3.34605 3.38988 3.41326 3.79145 4.17542 4.23517 4.48360 4.67615 4.87287 5.06965 5.18691 5.23150 5.26275 5.33608 5.38323 5.40851 5.46497 5.61433 5.67092 5.75023 5.79601 5.89508 5.95437 5.99894 6.05732 6.13238 6.27942 6.35244 6.47948 6.71730 6.78276 7.12388 7.14406 7.36640 7.40281 7.54223 7.70730 7.85831 8.03067 8.46016 9.07447 9.64196 11.14114 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.004778 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.648718 B = 5858.234882 C = 6494.264590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.039 3.961 3 H 0.081 0.919 4 O -0.381 6.381 5 C 0.051 3.949 6 C -0.155 4.155 7 C 0.050 3.950 8 H 0.128 0.872 9 N -0.519 5.519 10 C 0.042 3.958 11 C 0.081 3.919 12 O -0.568 6.568 13 C 0.044 3.956 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.371 0.629 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 -14.001 -0.053 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 H 0.099 0.901 4 O -0.300 6.300 5 C -0.026 4.026 6 C -0.193 4.193 7 C -0.059 4.059 8 H 0.145 0.855 9 N -0.242 5.242 10 C -0.085 4.085 11 C 0.003 3.997 12 O -0.374 6.374 13 C -0.082 4.082 14 C -0.139 4.139 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.120 -13.681 0.388 18.959 hybrid contribution 0.014 0.669 -0.761 1.014 sum -13.107 -13.011 -0.374 18.472 Atomic orbital electron populations 1.22158 0.94960 1.02288 1.01714 1.23567 0.94621 0.97459 0.86391 0.90115 1.88399 1.70876 1.40399 1.30286 1.23364 0.94841 0.88894 0.95472 1.23444 0.99239 1.01318 0.95257 1.23769 0.97059 0.95164 0.89887 0.85499 1.62214 1.14969 1.17817 1.29248 1.22362 0.91894 0.96309 0.97964 1.22259 0.95447 0.88692 0.93270 1.86466 1.78436 1.35053 1.37473 1.22465 0.94855 0.92605 0.98286 1.21631 0.98126 0.98103 0.96071 1.19070 0.93565 0.92700 0.96252 1.21207 1.22713 1.18730 0.93096 0.92771 1.25025 0.96957 0.97042 0.95434 1.69954 1.34855 1.30819 1.17904 0.86666 0.79591 0.79351 0.82435 1.21316 1.20255 1.20291 0.92346 0.92865 0.91240 0.89978 0.92664 0.89899 0.89575 0.93528 0.88722 0.93583 0.92595 0.78152 0.90736 0.94908 0.93622 0.92647 0.96652 0.96858 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.31 37.16 0.35 -1.61 16 2 C 0.04 0.56 3.12 -26.00 -0.08 0.48 16 3 H 0.08 1.32 5.55 -51.93 -0.29 1.03 16 4 O -0.38 -5.87 11.02 -35.23 -0.39 -6.26 16 5 C 0.05 0.64 7.78 38.33 0.30 0.93 16 6 C -0.15 -2.01 6.65 -24.34 -0.16 -2.17 16 7 C 0.05 0.68 2.41 -65.77 -0.16 0.52 16 8 H 0.13 1.66 4.77 -51.93 -0.25 1.42 16 9 N -0.52 -7.69 4.43 -224.33 -0.99 -8.68 16 10 C 0.04 0.56 5.27 -3.83 -0.02 0.54 16 11 C 0.08 0.84 7.34 37.16 0.27 1.11 16 12 O -0.57 -5.41 10.65 -35.23 -0.38 -5.78 16 13 C 0.04 0.79 3.88 -3.83 -0.01 0.77 16 14 C -0.10 -2.10 5.22 -26.73 -0.14 -2.24 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.85 5.88 -51.93 -0.31 0.55 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.25 5.90 -51.93 -0.31 0.95 16 31 H 0.05 0.62 5.08 -51.93 -0.26 0.35 16 32 H 0.09 1.31 6.30 -51.93 -0.33 0.98 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.37 1.95 9.12 45.56 0.42 2.37 16 36 H 0.07 1.36 5.71 -51.93 -0.30 1.06 16 37 H 0.03 0.60 6.49 -51.93 -0.34 0.26 16 38 H 0.05 0.92 6.57 -51.92 -0.34 0.58 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -31.68 319.58 -7.50 -39.18 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.07 Total: 1.29 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.21 Total: -14.83 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.26 Total: -35.20 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.76 Total: -12.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.68 -7.50 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361552497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.690 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds