Wall clock time and date at job start Mon Mar 30 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.52994 * 109.47214 * 180.02562 * 14 13 12 16 16 O 1.42907 * 109.47177 * 179.97438 * 15 14 13 17 17 C 1.42894 * 113.99781 * 179.97438 * 16 15 14 18 18 C 1.53177 * 109.54684 * 269.55571 * 17 16 15 19 19 C 1.53090 * 109.16567 * 183.15216 * 18 17 16 20 20 O 1.42911 * 109.41202 * 57.61270 * 19 18 17 21 21 C 1.42897 * 114.09723 * 298.83930 * 20 19 18 22 22 C 1.53096 * 109.41593 * 61.15981 * 21 20 19 23 23 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 24 24 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 25 25 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 26 26 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 27 27 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 28 28 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 29 29 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 30 30 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 31 31 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 32 32 H 1.09001 * 109.47423 * 299.99856 * 15 14 13 33 33 H 1.08997 * 109.46936 * 60.00133 * 15 14 13 34 34 H 1.09001 * 109.54801 * 29.82529 * 17 16 15 35 35 H 1.08999 * 109.52549 * 303.06346 * 18 17 16 36 36 H 1.09007 * 109.52084 * 63.24886 * 18 17 16 37 37 H 1.08996 * 109.48461 * 297.63205 * 19 18 17 38 38 H 1.09002 * 109.47952 * 177.59016 * 19 18 17 39 39 H 1.08998 * 109.48265 * 301.17591 * 21 20 19 40 40 H 1.09002 * 109.49226 * 181.14472 * 21 20 19 41 41 H 1.08996 * 109.52361 * 182.48695 * 22 21 20 42 42 H 1.09004 * 109.52193 * 62.29073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6609 0.4202 -4.7694 16 8 3.1402 -0.2856 -5.9159 17 6 3.2395 0.5179 -7.0934 18 6 1.9232 0.4486 -7.8736 19 6 2.0656 1.2478 -9.1715 20 8 3.1566 0.7263 -9.9332 21 6 4.4211 0.8084 -9.2727 22 6 4.3733 -0.0085 -7.9787 23 1 -0.3633 0.4033 0.9453 24 1 -0.3634 0.6170 -0.8219 25 1 -0.3633 -1.0202 -0.1234 26 1 1.9017 -1.9132 3.4364 27 1 1.4495 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0462 -2.1183 30 1 3.5903 -0.9272 -3.3692 31 1 1.9182 -1.3565 -3.8030 32 1 1.6658 0.8147 -4.9750 33 1 3.3379 1.2432 -4.5406 34 1 3.4451 1.5511 -6.8136 35 1 1.6935 -0.5906 -8.1090 36 1 1.1198 0.8726 -7.2710 37 1 2.2551 2.2948 -8.9349 38 1 1.1460 1.1666 -9.7511 39 1 4.6414 1.8496 -9.0373 40 1 5.1986 0.4107 -9.9250 41 1 5.3223 0.0887 -7.4514 42 1 4.1931 -1.0570 -8.2163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381286913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:53 Heat of formation + Delta-G solvation = -133.622286 kcal Electronic energy + Delta-G solvation = -19105.844751 eV Core-core repulsion = 16084.261437 eV Total energy + Delta-G solvation = -3021.583315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61131 -38.80384 -38.00319 -35.21240 -33.91680 -32.71081 -32.12097 -29.91069 -26.85089 -25.86783 -24.81765 -24.44418 -22.49110 -21.81541 -21.28356 -19.56269 -18.03829 -17.27222 -17.08936 -16.75411 -16.33127 -16.05877 -15.81567 -15.47764 -15.30612 -14.90709 -14.59531 -14.34953 -13.96310 -13.67900 -13.51595 -13.30154 -13.21935 -12.61101 -12.47189 -12.38625 -12.30366 -12.21671 -11.91002 -11.87102 -11.70581 -11.60018 -11.34271 -11.15172 -10.68755 -10.47082 -10.36672 -9.12473 -8.68181 -6.28690 1.46182 1.53739 1.73149 2.48995 2.51667 2.93591 3.03344 3.54394 3.72944 3.78564 3.95310 3.99362 4.04854 4.20529 4.24620 4.26576 4.40919 4.44369 4.49573 4.50443 4.61460 4.66039 4.68695 4.74282 4.74478 4.79641 4.81667 5.02098 5.03321 5.09465 5.13867 5.19757 5.26980 5.43832 5.88024 6.10021 6.20236 6.24994 6.42821 6.70726 6.77216 7.46291 8.63993 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.049681 B = 0.002927 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.460931 B = 9565.369955 C = 9665.052183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.029 0.971 4 C -0.598 4.598 5 H 0.018 0.982 6 C -0.019 4.019 7 N -0.935 5.935 8 Si 1.081 2.919 9 H -0.289 1.289 10 H -0.267 1.267 11 H -0.246 1.246 12 N -0.693 5.693 13 C 0.064 3.936 14 C -0.106 4.106 15 C 0.070 3.930 16 O -0.400 6.400 17 C 0.081 3.919 18 C -0.176 4.176 19 C 0.063 3.937 20 O -0.403 6.403 21 C 0.064 3.936 22 C -0.153 4.153 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.253 0.747 27 H 0.332 0.668 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 8.556 -27.002 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.047 0.953 4 C -0.636 4.636 5 H 0.036 0.964 6 C -0.217 4.217 7 N -0.571 5.571 8 Si 0.901 3.099 9 H -0.215 1.215 10 H -0.192 1.192 11 H -0.170 1.170 12 N -0.323 5.323 13 C -0.066 4.066 14 C -0.144 4.144 15 C -0.007 4.007 16 O -0.320 6.320 17 C 0.023 3.977 18 C -0.214 4.214 19 C -0.014 4.014 20 O -0.323 6.323 21 C -0.013 4.013 22 C -0.191 4.191 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.150 0.850 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.076 9.540 -25.907 27.629 hybrid contribution -0.541 -1.613 -0.416 1.751 sum 0.534 7.928 -26.323 27.496 Atomic orbital electron populations 1.22671 0.99265 1.00382 1.00584 1.19314 0.90251 0.93932 0.88357 0.95278 1.22150 1.38973 1.09573 0.92868 0.96383 1.27146 0.93115 1.09593 0.91864 1.70975 1.47478 1.05573 1.33038 0.83603 0.78845 0.70974 0.76429 1.21464 1.19208 1.17039 1.60523 1.58308 1.09794 1.03672 1.21858 0.99331 0.95517 0.89867 1.21341 1.02183 0.98499 0.92336 1.22453 0.98899 0.94474 0.84861 1.87911 1.86828 1.38582 1.18689 1.22280 0.95342 0.94974 0.85088 1.22706 0.98486 1.02240 0.97966 1.22678 0.90580 0.96598 0.91539 1.87917 1.16843 1.83797 1.43706 1.22705 0.85890 0.99758 0.92915 1.22309 0.98871 1.01358 0.96528 0.93650 0.92723 0.93956 0.93873 0.85038 0.94632 0.91617 0.91981 0.91750 0.92155 0.92312 0.90844 0.91636 0.89933 0.91584 0.87384 0.91510 0.86954 0.89604 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.04 8.90 71.98 0.64 -6.40 16 2 C 0.19 8.91 2.17 44.17 0.10 9.01 16 3 H 0.03 1.35 6.37 -2.38 -0.02 1.33 16 4 C -0.60 -34.71 9.05 25.60 0.23 -34.48 16 5 H 0.02 1.17 8.06 -2.91 -0.02 1.15 16 6 C -0.02 -1.09 5.19 84.66 0.44 -0.65 16 7 N -0.94 -59.30 13.70 21.45 0.29 -59.00 16 8 Si 1.08 49.64 26.44 68.60 1.81 51.45 16 9 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.25 -9.93 6.15 99.48 0.61 -9.32 16 12 N -0.69 -28.39 6.23 -495.45 -3.09 -31.47 16 13 C 0.06 1.99 5.48 86.30 0.47 2.47 16 14 C -0.11 -2.87 5.84 30.59 0.18 -2.69 16 15 C 0.07 1.54 5.75 71.98 0.41 1.95 16 16 O -0.40 -9.49 10.00 -148.98 -1.49 -10.98 16 17 C 0.08 1.43 2.70 30.72 0.08 1.51 16 18 C -0.18 -2.78 5.76 30.68 0.18 -2.60 16 19 C 0.06 0.82 6.84 72.01 0.49 1.31 16 20 O -0.40 -6.86 10.77 -148.98 -1.60 -8.46 16 21 C 0.06 0.82 6.84 72.01 0.49 1.31 16 22 C -0.15 -2.44 5.79 30.69 0.18 -2.26 16 23 H 0.04 1.97 5.48 -2.39 -0.01 1.96 16 24 H 0.05 1.87 7.64 -2.38 -0.02 1.85 16 25 H 0.04 1.73 8.00 -2.39 -0.02 1.72 16 26 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 27 H 0.33 13.08 8.38 -89.69 -0.75 12.32 16 28 H 0.04 1.01 7.58 -2.39 -0.02 0.99 16 29 H 0.07 2.07 8.05 -2.39 -0.02 2.05 16 30 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.15 7.99 -2.39 -0.02 1.13 16 33 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 34 H 0.07 1.10 7.79 -2.39 -0.02 1.09 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.17 7.99 -2.38 -0.02 1.15 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.48 331.26 -0.09 -68.57 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.09 Total: 21.42 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 3.90 Total: -31.53 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.79 Total: -90.48 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -3.09 Total: -19.44 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.81 Total: 51.45 kcal Total: -68.48 -0.09 -68.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381286913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.050 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds