Wall clock time and date at job start Mon Mar 30 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.54345 * 2 1 4 4 C 1.53102 * 109.50620 * 120.10543 * 2 1 3 5 5 N 1.47016 * 109.25461 * 63.08868 * 4 2 1 6 6 C 1.47012 * 110.75470 * 58.61239 * 5 4 2 7 7 C 1.53096 * 109.26008 * 301.38665 * 6 5 4 8 8 H 1.09002 * 109.50591 * 296.91160 * 7 6 5 9 9 C 1.53004 * 109.54317 * 176.80215 * 7 6 5 10 10 O 1.42896 * 109.47176 * 175.10556 * 9 7 6 11 11 C 1.42896 * 114.00066 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46801 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46621 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00605 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00152 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46948 * 59.99825 * 19 17 15 21 21 H 1.48502 * 109.47013 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46769 * 299.99831 * 19 17 15 23 23 O 1.43015 * 109.50930 * 239.89192 * 2 1 3 24 24 H 1.08994 * 109.46979 * 180.10808 * 1 2 3 25 25 H 1.08997 * 109.47019 * 300.11123 * 1 2 3 26 26 H 1.08999 * 109.46762 * 60.10825 * 1 2 3 27 27 H 1.08995 * 109.50576 * 183.02154 * 4 2 1 28 28 H 1.08996 * 109.50723 * 303.15782 * 4 2 1 29 29 H 1.00906 * 111.00121 * 294.84257 * 5 4 2 30 30 H 1.08997 * 109.50764 * 181.44919 * 6 5 4 31 31 H 1.09004 * 109.50176 * 61.31811 * 6 5 4 32 32 H 1.09000 * 109.47086 * 295.10639 * 9 7 6 33 33 H 1.09005 * 109.46701 * 55.10589 * 9 7 6 34 34 H 1.09007 * 109.47157 * 300.00370 * 11 10 9 35 35 H 1.08997 * 109.47253 * 59.99986 * 11 10 9 36 36 H 1.08997 * 109.46895 * 300.00092 * 12 11 10 37 37 H 1.09000 * 109.46978 * 60.00030 * 12 11 10 38 38 H 1.08997 * 109.47280 * 299.99874 * 13 12 11 39 39 H 1.09000 * 109.46630 * 59.99900 * 13 12 11 40 40 H 1.08997 * 109.47370 * 300.00149 * 14 13 12 41 41 H 1.09000 * 109.46915 * 60.00338 * 14 13 12 42 42 H 0.97007 * 120.00426 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2485 5 7 1.6110 -2.1290 1.2045 6 6 2.1185 -2.7916 -0.0057 7 6 1.6066 -2.0469 -1.2416 8 1 0.5188 -2.1064 -1.2777 9 6 2.1952 -2.6828 -2.5026 10 8 1.6290 -2.0614 -3.6581 11 6 2.1147 -2.5844 -4.8961 12 6 1.4446 -1.8489 -6.0585 13 6 1.9652 -2.4085 -7.3839 14 6 1.2946 -1.6734 -8.5462 15 6 1.8078 -2.2242 -9.8517 16 1 2.5387 -3.0192 -9.8525 17 6 1.3441 -1.7131 -11.0454 18 7 0.4536 -0.7452 -11.0446 19 14 1.9796 -2.3961 -12.6637 20 1 1.6645 -3.8449 -12.7472 21 1 1.3298 -1.6818 -13.7918 22 1 3.4503 -2.2043 -12.7384 23 8 2.0076 -0.6762 -1.1662 24 1 -0.3633 -1.0276 0.0019 25 1 -0.3633 0.5155 0.8890 26 1 -0.3633 0.5122 -0.8910 27 1 3.1298 -0.6773 1.2760 28 1 1.6331 -0.2460 2.1390 29 1 0.6062 -2.2015 1.2620 30 1 1.7668 -3.8230 -0.0306 31 1 3.2084 -2.7780 0.0018 32 1 3.2763 -2.5444 -2.5086 33 1 1.9652 -3.7482 -2.5135 34 1 3.1942 -2.4436 -4.9515 35 1 1.8835 -3.6478 -4.9569 36 1 0.3651 -1.9894 -6.0032 37 1 1.6763 -0.7856 -5.9974 38 1 3.0446 -2.2677 -7.4389 39 1 1.7339 -3.4719 -7.4451 40 1 0.2152 -1.8146 -8.4911 41 1 1.5255 -0.6099 -8.4851 42 1 0.1270 -0.3858 -11.8844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385240305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:03 Heat of formation + Delta-G solvation = -136.968084 kcal Electronic energy + Delta-G solvation = -19083.952272 eV Core-core repulsion = 16062.223872 eV Total energy + Delta-G solvation = -3021.728400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08172 -38.96432 -36.45585 -35.49359 -34.51401 -33.69550 -30.89797 -29.94150 -27.49369 -26.45389 -25.08294 -23.50345 -23.33229 -21.77997 -20.89241 -18.44882 -17.81939 -17.69281 -17.47945 -16.86093 -16.56214 -16.51445 -15.84885 -15.55672 -15.43824 -14.86141 -14.34087 -14.20040 -13.84705 -13.64899 -13.44459 -12.96549 -12.86648 -12.83526 -12.74167 -12.41944 -12.35164 -12.28579 -12.17808 -11.94058 -11.88945 -11.46758 -11.34675 -11.11972 -11.00748 -10.57677 -10.54871 -9.28072 -8.20350 -6.32459 1.39627 1.43529 1.51444 2.40181 2.58640 2.69287 3.12355 3.19717 3.71309 3.86042 3.93965 4.00877 4.04747 4.10407 4.19896 4.29082 4.34535 4.44088 4.45052 4.46317 4.58772 4.62352 4.68214 4.72932 4.85709 4.88765 4.92398 5.01112 5.14707 5.17603 5.23852 5.27027 5.51888 5.73924 5.78772 5.84611 6.16948 6.23347 6.28515 6.31527 6.84871 7.37002 8.91675 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.053676 B = 0.002710 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.527715 B =10330.011583 C =10658.695832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.038 3.962 3 H 0.110 0.890 4 C 0.031 3.969 5 N -0.680 5.680 6 C 0.036 3.964 7 C 0.052 3.948 8 H 0.063 0.937 9 C 0.065 3.935 10 O -0.408 6.408 11 C 0.072 3.928 12 C -0.110 4.110 13 C -0.094 4.094 14 C 0.022 3.978 15 C -0.546 4.546 16 H 0.063 0.937 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.266 1.266 23 O -0.394 6.394 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.349 0.651 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.059 0.941 40 H -0.010 1.010 41 H -0.012 1.012 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.740 26.936 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.127 0.873 4 C -0.099 4.099 5 N -0.310 5.310 6 C -0.094 4.094 7 C -0.007 4.007 8 H 0.081 0.919 9 C -0.012 4.012 10 O -0.328 6.328 11 C -0.004 4.004 12 C -0.147 4.147 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.191 1.191 23 O -0.313 6.313 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.168 0.832 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.008 0.992 41 H 0.006 0.994 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.056 -3.634 27.135 27.548 hybrid contribution -0.574 0.338 -1.734 1.857 sum 2.482 -3.296 25.401 25.734 Atomic orbital electron populations 1.22357 0.95564 1.02570 1.03374 1.23109 0.94582 0.97830 0.86555 0.87265 1.22682 1.01696 0.88129 0.97380 1.60938 1.18005 1.14659 1.37359 1.22588 1.01695 0.98919 0.86237 1.22916 0.99086 0.83259 0.95433 0.91943 1.22639 0.97831 0.96865 0.83860 1.87906 1.67536 1.63093 1.14245 1.22497 0.97761 0.97492 0.82685 1.21457 1.00278 0.99783 0.93231 1.21353 0.99614 0.99521 0.92624 1.19022 0.94652 0.94535 0.93323 1.21710 1.24546 1.19776 0.92317 0.91829 1.26065 0.95205 0.95273 1.03644 1.70111 1.31682 1.27929 1.27920 0.85445 0.78781 0.78737 0.77747 1.18931 1.20863 1.19051 1.88178 1.75674 1.23521 1.43967 0.92353 0.89093 0.93159 0.90371 0.87485 0.83210 0.87502 0.89896 0.92448 0.89464 0.92674 0.91768 0.92576 0.93106 0.92549 0.92208 0.99165 0.99387 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.75 71.98 0.63 -2.07 16 2 C 0.04 0.64 3.92 30.63 0.12 0.76 16 3 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.03 0.40 6.23 86.32 0.54 0.93 16 5 N -0.68 -8.95 6.85 -512.99 -3.51 -12.46 16 6 C 0.04 0.51 6.05 86.31 0.52 1.03 16 7 C 0.05 1.05 2.68 30.63 0.08 1.13 16 8 H 0.06 1.30 6.49 -2.39 -0.02 1.28 16 9 C 0.06 1.42 5.61 71.98 0.40 1.83 16 10 O -0.41 -12.52 10.31 -144.55 -1.49 -14.01 16 11 C 0.07 2.14 5.94 71.98 0.43 2.57 16 12 C -0.11 -4.09 5.58 30.60 0.17 -3.92 16 13 C -0.09 -3.96 5.15 30.60 0.16 -3.80 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 16 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 19 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 O -0.39 -9.68 10.25 -144.55 -1.48 -11.16 16 24 H 0.06 0.83 5.28 -2.39 -0.01 0.82 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.35 3.82 7.34 -89.69 -0.66 3.16 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -70.52 334.59 0.03 -70.49 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.31 Total: 10.29 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.90 Total: -31.70 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -3.23 Total: -70.89 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -2.97 Total: -25.17 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -70.52 0.03 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385240305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.480 kcal (2) G-P(sol) polarization free energy of solvation -70.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds