Wall clock time and date at job start Mon Mar 30 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50710 * 2 1 4 4 C 1.53100 * 109.50446 * 239.91612 * 2 1 3 5 5 N 1.47015 * 109.25373 * 183.17318 * 4 2 1 6 6 C 1.46904 * 110.99833 * 182.38897 * 5 4 2 7 7 C 1.53004 * 109.47051 * 293.95652 * 6 5 4 8 8 C 1.53005 * 109.46846 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46861 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46998 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00391 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00451 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99483 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47306 * 90.00247 * 14 12 10 16 16 H 1.48507 * 109.47009 * 209.99942 * 14 12 10 17 17 H 1.48500 * 109.47560 * 329.99825 * 14 12 10 18 18 C 1.47019 * 110.75398 * 58.61801 * 5 4 2 19 19 C 1.53096 * 109.25360 * 301.37668 * 18 5 4 20 20 H 1.08999 * 109.51142 * 296.92056 * 19 18 5 21 21 C 1.53005 * 109.50522 * 176.78406 * 19 18 5 22 22 O 1.42895 * 109.46991 * 175.00420 * 21 19 18 23 23 O 1.43018 * 109.25851 * 56.85704 * 19 18 5 24 24 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46601 * 299.99885 * 1 2 3 26 26 H 1.08995 * 109.47112 * 59.99746 * 1 2 3 27 27 H 1.09005 * 109.50462 * 303.10411 * 4 2 1 28 28 H 1.08997 * 109.50755 * 63.19272 * 4 2 1 29 29 H 1.09002 * 109.47096 * 53.95280 * 6 5 4 30 30 H 1.08995 * 109.47366 * 173.95405 * 6 5 4 31 31 H 1.08997 * 109.46972 * 299.99288 * 7 6 5 32 32 H 1.08995 * 109.47238 * 59.99674 * 7 6 5 33 33 H 1.08997 * 109.47294 * 300.00397 * 8 7 6 34 34 H 1.09007 * 109.46931 * 59.99755 * 8 7 6 35 35 H 1.08997 * 109.47299 * 299.99693 * 9 8 7 36 36 H 1.08999 * 109.47382 * 60.00063 * 9 8 7 37 37 H 0.96998 * 120.00018 * 179.97438 * 13 12 10 38 38 H 1.08991 * 109.50896 * 61.31593 * 18 5 4 39 39 H 1.09001 * 109.50263 * 181.40442 * 18 5 4 40 40 H 1.08998 * 109.47046 * 295.00641 * 21 19 18 41 41 H 1.09000 * 109.46874 * 55.00568 * 21 19 18 42 42 H 0.96711 * 113.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7870 -1.2053 6 6 4.0447 -1.4250 -2.4154 7 6 3.6174 -2.8938 -2.4492 8 6 4.1745 -3.5580 -3.7100 9 6 3.7478 -5.0269 -3.7434 10 6 4.2959 -5.6810 -4.9855 11 1 4.8896 -5.1066 -5.6812 12 6 4.0396 -7.0128 -5.2338 13 7 4.5174 -7.5835 -6.3179 14 14 3.0121 -8.0061 -4.0308 15 1 1.5794 -7.9157 -4.4110 16 1 3.4447 -9.4264 -4.0654 17 1 3.1954 -7.4662 -2.6596 18 6 3.9649 -1.4870 0.0047 19 6 3.4344 -0.7558 1.2408 20 1 3.8537 0.2497 1.2768 21 6 3.8377 -1.5241 2.5010 22 8 3.4440 -0.7825 3.6573 23 8 2.0084 -0.6761 1.1660 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6337 -1.7341 -1.2763 28 1 1.7260 -0.1795 -2.1391 29 1 3.6579 -0.9138 -3.2971 30 1 5.1328 -1.3632 -2.4077 31 1 4.0042 -3.4050 -1.5677 32 1 2.5293 -2.9556 -2.4569 33 1 3.7875 -3.0467 -4.5913 34 1 5.2628 -3.4962 -3.7026 35 1 4.1353 -5.5380 -2.8621 36 1 2.6596 -5.0891 -3.7505 37 1 4.3374 -8.5205 -6.4924 38 1 3.5882 -2.5097 -0.0029 39 1 5.0545 -1.5005 0.0288 40 1 3.3445 -2.4960 2.5074 41 1 4.9185 -1.6650 2.5103 42 1 3.6690 -1.2108 4.4947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385333929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:19 Heat of formation + Delta-G solvation = -109.827545 kcal Electronic energy + Delta-G solvation = -19781.518657 eV Core-core repulsion = 16760.967159 eV Total energy + Delta-G solvation = -3020.551497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09777 -37.18906 -36.46745 -34.16514 -33.20082 -32.15900 -30.10806 -28.62051 -26.49402 -25.67605 -23.25692 -22.09976 -21.54160 -20.31307 -19.80170 -17.58751 -16.96073 -16.68827 -16.12291 -15.60066 -15.19847 -14.64217 -14.61961 -14.29909 -14.14800 -13.76069 -13.05365 -12.77477 -12.65353 -12.60485 -12.39278 -12.18196 -11.94458 -11.82860 -11.37910 -11.23626 -11.00696 -10.91502 -10.63147 -10.45855 -10.28711 -9.96891 -9.73836 -9.69292 -9.63572 -9.19163 -8.55022 -8.28669 -6.05496 -4.03300 3.28863 3.36217 3.40010 3.46399 3.57547 4.08851 4.43917 4.70941 4.74709 4.90541 4.94327 5.01807 5.04656 5.20111 5.21150 5.27767 5.29398 5.31159 5.39379 5.46230 5.60810 5.67413 5.73558 5.76214 5.90572 5.93491 6.00264 6.11897 6.32485 6.53492 6.66931 6.86059 6.88405 6.97088 7.10725 7.29626 7.36962 7.42531 7.79109 8.53419 8.99684 9.57439 11.08124 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.004050 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.258623 B = 6911.464907 C = 7150.496638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.064 0.936 4 C 0.017 3.983 5 N -0.536 5.536 6 C 0.054 3.946 7 C -0.158 4.158 8 C -0.098 4.098 9 C -0.014 4.014 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.020 3.980 19 C 0.097 3.903 20 H 0.071 0.929 21 C 0.084 3.916 22 O -0.566 6.566 23 O -0.372 6.372 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.013 0.987 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 15.304 17.043 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.082 0.918 4 C -0.111 4.111 5 N -0.259 5.259 6 C -0.073 4.073 7 C -0.197 4.197 8 C -0.136 4.136 9 C -0.051 4.051 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.192 1.192 18 C -0.108 4.108 19 C 0.038 3.962 20 H 0.089 0.911 21 C 0.006 3.994 22 O -0.371 6.371 23 O -0.291 6.291 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.975 15.969 16.638 23.402 hybrid contribution -0.395 -1.919 0.571 2.041 sum -4.370 14.049 17.210 22.642 Atomic orbital electron populations 1.21738 0.92830 1.03046 1.02524 1.22149 0.94782 0.95530 0.84355 0.91813 1.22884 0.88354 1.00731 0.99109 1.62482 1.08819 1.52126 1.02436 1.22319 1.00390 0.93161 0.91468 1.22331 1.00978 0.96029 1.00388 1.21371 0.99873 0.97532 0.94839 1.19570 0.95892 0.92243 0.97420 1.21182 1.33115 0.95513 1.06058 0.91066 1.25043 0.95569 0.97798 0.95139 1.69915 1.45973 1.12404 1.26070 0.86773 0.80817 0.79280 0.82357 1.20313 1.21353 1.19160 1.22710 1.01168 0.96942 0.90015 1.22071 0.82151 0.99391 0.92549 0.91124 1.22127 0.98187 0.94356 0.84752 1.86525 1.84643 1.49953 1.15985 1.88027 1.20112 1.78357 1.42638 0.91814 0.91650 0.90896 0.93181 0.89629 0.90445 0.90418 0.92346 0.92461 0.92803 0.92764 0.96901 0.97334 0.92755 0.92868 0.89479 0.92690 0.91917 0.77456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.00 16 2 C 0.09 1.03 3.42 -26.68 -0.09 0.93 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.02 0.21 4.61 -3.71 -0.02 0.19 16 5 N -0.54 -6.71 4.94 -234.30 -1.16 -7.87 16 6 C 0.05 0.71 5.38 -3.82 -0.02 0.69 16 7 C -0.16 -2.50 4.50 -26.73 -0.12 -2.62 16 8 C -0.10 -1.91 5.15 -26.73 -0.14 -2.05 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 10 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 11 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 18 C 0.02 0.24 4.41 -3.71 -0.02 0.22 16 19 C 0.10 1.13 3.09 -26.68 -0.08 1.04 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 C 0.08 0.81 6.71 37.16 0.25 1.06 16 22 O -0.57 -5.74 13.63 -39.74 -0.54 -6.28 16 23 O -0.37 -4.97 10.08 -39.74 -0.40 -5.37 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 6.59 -51.93 -0.34 0.32 16 28 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.92 6.42 -51.93 -0.33 0.59 16 32 H 0.06 0.92 6.61 -51.93 -0.34 0.58 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.05 0.69 6.40 -51.93 -0.33 0.35 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.38 1.94 9.12 45.56 0.42 2.35 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -33.27 328.85 -8.24 -41.51 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.78 Total: -1.36 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.42 Total: -15.54 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.38 Total: -35.31 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.94 Total: -11.64 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.27 -8.24 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385333929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.317 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds