Wall clock time and date at job start Mon Mar 30 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 N 1.46908 * 109.46968 * 186.12258 * 3 2 1 5 5 C 1.46897 * 111.00015 * 173.49456 * 4 3 2 6 6 C 1.52998 * 109.47096 * 196.43545 * 5 4 3 7 7 O 1.42900 * 109.46955 * 62.87964 * 6 5 4 8 8 C 1.42906 * 113.99539 * 180.02562 * 7 6 5 9 9 C 1.50709 * 109.46892 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99622 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99932 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00155 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99996 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46967 * 89.99897 * 13 11 9 15 15 H 1.48495 * 109.47080 * 210.00209 * 13 11 9 16 16 H 1.48511 * 109.46682 * 330.00045 * 13 11 9 17 17 C 1.46894 * 110.99906 * 297.44822 * 4 3 2 18 18 H 1.09001 * 110.80896 * 205.31886 * 17 4 3 19 19 C 1.54813 * 110.91140 * 81.68818 * 17 4 3 20 20 C 1.54102 * 104.19018 * 220.92308 * 19 17 4 21 21 O 1.43748 * 107.29116 * 357.96791 * 20 19 17 22 22 C 1.44376 * 106.97720 * 26.51283 * 21 20 19 23 23 H 1.09003 * 109.46865 * 299.99884 * 1 2 3 24 24 H 1.08998 * 109.47085 * 59.99788 * 1 2 3 25 25 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46865 * 240.00116 * 2 1 3 27 27 H 1.08998 * 109.47085 * 120.00212 * 2 1 3 28 28 H 1.08995 * 109.47038 * 306.12067 * 3 2 1 29 29 H 1.09001 * 109.47355 * 66.12310 * 3 2 1 30 30 H 1.09000 * 109.47291 * 316.43577 * 5 4 3 31 31 H 1.08994 * 109.47267 * 76.43268 * 5 4 3 32 32 H 1.09003 * 109.47146 * 182.88069 * 6 5 4 33 33 H 1.08999 * 109.47236 * 302.87975 * 6 5 4 34 34 H 1.09001 * 109.47180 * 299.99534 * 8 7 6 35 35 H 1.08992 * 109.47405 * 60.00370 * 8 7 6 36 36 H 0.97002 * 120.00294 * 179.97438 * 12 11 9 37 37 H 1.09003 * 110.48287 * 339.59555 * 19 17 4 38 38 H 1.08995 * 110.48579 * 102.10910 * 19 17 4 39 39 H 1.08997 * 109.87726 * 117.38963 * 20 19 17 40 40 H 1.09001 * 109.87391 * 238.54494 * 20 19 17 41 41 H 1.08997 * 110.62083 * 201.43419 * 22 21 20 42 42 H 1.09008 * 110.61730 * 78.43838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5016 1.4451 -0.1477 5 6 4.0122 2.8132 -0.3067 6 6 5.4385 2.7644 -0.8583 7 8 5.4270 2.1666 -2.1562 8 6 6.7170 2.0719 -2.7638 9 6 6.5869 1.4304 -4.1213 10 1 5.6163 1.1253 -4.4836 11 6 7.7070 1.2332 -4.9008 12 7 8.8888 1.6052 -4.4598 13 14 7.5459 0.4375 -6.5831 14 1 7.3221 1.4882 -7.6083 15 1 8.7914 -0.3063 -6.9002 16 1 6.3958 -0.5022 -6.5781 17 6 4.1466 0.7710 0.9869 18 1 5.1638 1.1366 1.1272 19 6 4.1330 -0.7654 0.7973 20 6 3.8020 -1.3160 2.1980 21 8 3.6957 -0.1902 3.0855 22 6 3.3120 0.9457 2.2813 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5899 1.9869 -0.8301 29 1 1.7689 1.9237 0.9397 30 1 3.3734 3.3613 -0.9993 31 1 4.0138 3.3152 0.6608 32 1 5.8359 3.7770 -0.9281 33 1 6.0659 2.1730 -0.1914 34 1 7.1413 3.0699 -2.8731 35 1 7.3705 1.4659 -2.1364 36 1 9.6769 1.4661 -5.0080 37 1 3.3630 -1.0546 0.0820 38 1 5.1104 -1.1177 0.4677 39 1 2.8559 -1.8564 2.1697 40 1 4.5998 -1.9786 2.5337 41 1 3.5729 1.8773 2.7835 42 1 2.2456 0.9149 2.0574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385342802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:34 Heat of formation + Delta-G solvation = -79.433379 kcal Electronic energy + Delta-G solvation = -20293.263328 eV Core-core repulsion = 17274.029820 eV Total energy + Delta-G solvation = -3019.233508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35464 -37.29434 -36.15692 -33.46804 -32.58511 -31.27325 -29.41120 -28.08341 -26.82971 -25.14794 -23.15193 -22.24861 -21.69302 -21.11067 -19.82544 -17.04133 -16.60158 -16.32958 -15.64640 -15.44027 -15.03381 -14.58673 -14.35717 -14.23909 -13.89453 -13.55887 -13.22013 -13.14043 -12.56665 -12.23277 -12.15540 -11.80280 -11.63033 -11.56214 -11.21588 -11.17176 -10.94157 -10.81329 -10.69002 -10.68581 -10.39514 -10.18450 -9.94478 -9.73179 -9.04139 -8.75269 -8.09950 -8.03534 -6.06618 -4.07452 3.32789 3.37640 3.43429 3.62805 4.18844 4.38578 4.60438 4.71503 4.84975 4.93476 5.00660 5.02818 5.12014 5.17723 5.29928 5.30949 5.36992 5.48403 5.55423 5.59774 5.63192 5.72543 5.75429 5.81405 5.93419 5.98336 6.06257 6.13386 6.18288 6.22893 6.25581 6.31880 6.74808 7.14964 7.20445 7.24892 7.48839 7.85124 8.21816 8.67047 9.07431 9.57299 11.05100 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.004679 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.320867 B = 5982.579953 C = 6170.477835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.049 3.951 4 N -0.509 5.509 5 C 0.060 3.940 6 C 0.068 3.932 7 O -0.378 6.378 8 C 0.194 3.806 9 C -0.509 4.509 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.906 3.094 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.055 3.945 18 H 0.095 0.905 19 C -0.159 4.159 20 C 0.045 3.955 21 O -0.379 6.379 22 C 0.005 3.995 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.034 0.966 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 -1.807 12.963 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.079 4.079 4 N -0.233 5.233 5 C -0.068 4.068 6 C -0.011 4.011 7 O -0.297 6.297 8 C 0.120 3.880 9 C -0.548 4.548 10 H 0.084 0.916 11 C -0.145 4.145 12 N -0.540 5.540 13 Si 0.734 3.266 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.055 4.055 18 H 0.113 0.887 19 C -0.197 4.197 20 C -0.032 4.032 21 O -0.297 6.297 22 C -0.073 4.073 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.329 -2.132 12.609 18.471 hybrid contribution 0.238 0.209 -0.259 0.409 sum -13.091 -1.923 12.350 18.099 Atomic orbital electron populations 1.21764 0.95915 1.01633 1.01618 1.21989 0.95225 0.96900 1.03164 1.22299 0.87929 0.97405 1.00226 1.61965 1.04143 1.17527 1.39635 1.22178 0.97173 0.88638 0.98812 1.22244 0.94461 0.96383 0.87965 1.87945 1.32771 1.81130 1.27902 1.20166 0.79681 0.95390 0.92768 1.21058 0.94282 1.39241 1.00178 0.91564 1.24940 0.94893 0.95912 0.98801 1.69964 0.98371 1.47788 1.37880 0.86360 0.77543 0.79368 0.83359 1.20529 1.21147 1.19628 1.23282 0.98863 0.95277 0.88045 0.88716 1.23265 1.04585 0.94736 0.97091 1.23206 1.00817 0.89545 0.89632 1.88840 1.90220 1.18586 1.32093 1.24523 1.00110 0.90206 0.92486 0.93151 0.92549 0.92658 0.90312 0.91243 0.90436 0.94623 0.89995 0.94157 0.94313 0.94781 0.98099 0.97984 0.92758 0.88384 0.90080 0.92602 0.89920 0.89668 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.14 -1.46 3.97 -26.73 -0.11 -1.57 16 3 C 0.05 0.58 4.41 -3.82 -0.02 0.56 16 4 N -0.51 -7.39 4.40 -224.26 -0.99 -8.37 16 5 C 0.06 0.87 5.32 -3.83 -0.02 0.85 16 6 C 0.07 1.26 6.07 37.16 0.23 1.48 16 7 O -0.38 -9.21 10.24 -35.23 -0.36 -9.57 16 8 C 0.19 5.41 5.69 36.01 0.20 5.62 16 9 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16 10 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 13 Si 0.91 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 17 C 0.05 0.74 2.95 -65.71 -0.19 0.55 16 18 H 0.09 1.39 6.34 -51.93 -0.33 1.06 16 19 C -0.16 -2.05 5.89 -25.20 -0.15 -2.20 16 20 C 0.04 0.51 7.11 37.73 0.27 0.78 16 21 O -0.38 -5.03 11.52 -35.23 -0.41 -5.44 16 22 C 0.00 0.06 6.19 38.21 0.24 0.29 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 27 H 0.07 0.74 3.59 -51.93 -0.19 0.55 16 28 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 29 H 0.04 0.37 5.93 -51.93 -0.31 0.07 16 30 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 31 H 0.04 0.49 8.05 -51.93 -0.42 0.07 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.63 6.60 -51.93 -0.34 0.29 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 37 H 0.10 1.26 4.75 -51.93 -0.25 1.01 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.85 4.19 -51.92 -0.22 0.64 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -31.94 322.25 -7.78 -39.72 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.99 Total: -3.13 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.40 Total: -8.61 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.25 Total: -34.89 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.77 Total: -15.00 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.94 -7.78 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385342802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.717 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds