Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 N 1.46898 * 109.47151 * 187.15358 * 3 2 1 5 5 C 1.46905 * 111.00017 * 171.30412 * 4 3 2 6 6 C 1.52995 * 109.47161 * 195.95048 * 5 4 3 7 7 O 1.42901 * 109.47351 * 62.42979 * 6 5 4 8 8 C 1.42891 * 114.00467 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47428 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99721 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00218 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00247 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99893 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46965 * 269.99637 * 13 11 9 15 15 H 1.48495 * 109.47384 * 30.00004 * 13 11 9 16 16 H 1.48507 * 109.47197 * 150.00130 * 13 11 9 17 17 C 1.46901 * 110.99810 * 295.25654 * 4 3 2 18 18 H 1.09001 * 110.45335 * 199.21639 * 17 4 3 19 19 C 1.54511 * 110.51080 * 321.81624 * 17 4 3 20 20 C 1.54479 * 104.05646 * 118.64666 * 19 17 4 21 21 O 1.44426 * 104.80800 * 23.97973 * 20 19 17 22 22 C 1.44646 * 105.36434 * 319.56320 * 21 20 19 23 23 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47358 * 300.00034 * 1 2 3 25 25 H 1.08996 * 109.47224 * 59.99961 * 1 2 3 26 26 H 1.08993 * 109.47092 * 240.00012 * 2 1 3 27 27 H 1.09001 * 109.47501 * 119.99636 * 2 1 3 28 28 H 1.09004 * 109.47203 * 67.15143 * 3 2 1 29 29 H 1.09008 * 109.47311 * 307.15540 * 3 2 1 30 30 H 1.09001 * 109.47178 * 75.95089 * 5 4 3 31 31 H 1.08994 * 109.47169 * 315.95359 * 5 4 3 32 32 H 1.09004 * 109.47109 * 302.42947 * 6 5 4 33 33 H 1.08997 * 109.47520 * 182.42746 * 6 5 4 34 34 H 1.09000 * 109.47326 * 59.99821 * 8 7 6 35 35 H 1.09007 * 109.47431 * 299.99925 * 8 7 6 36 36 H 0.96999 * 120.00465 * 180.02562 * 12 11 9 37 37 H 1.08998 * 110.51030 * 237.28293 * 19 17 4 38 38 H 1.08996 * 110.50996 * 359.86660 * 19 17 4 39 39 H 1.09007 * 110.37394 * 142.81353 * 20 19 17 40 40 H 1.08997 * 110.37113 * 265.14446 * 20 19 17 41 41 H 1.08999 * 110.33890 * 281.59172 * 22 21 20 42 42 H 1.09001 * 110.50321 * 159.18365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4988 1.4462 -0.1725 5 6 4.0005 2.8106 -0.3837 6 6 5.4220 2.7499 -0.9462 7 8 5.4038 2.0977 -2.2176 8 6 6.6888 1.9876 -2.8329 9 6 6.5519 1.2873 -4.1603 10 1 5.5807 0.9587 -4.4998 11 6 7.6663 1.0660 -4.9412 12 7 7.5468 0.4553 -6.0997 13 14 9.3462 1.6336 -4.3535 14 1 9.5947 3.0186 -4.8283 15 1 9.3875 1.6042 -2.8694 16 1 10.3920 0.7294 -4.8958 17 6 4.1657 0.8113 0.9721 18 1 5.2140 1.1071 1.0142 19 6 3.4465 1.1782 2.2895 20 6 2.9681 -0.1808 2.8469 21 8 3.8559 -1.1550 2.2565 22 6 4.0399 -0.7259 0.8875 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.7848 1.9181 0.9471 29 1 1.5758 1.9920 -0.8191 30 1 4.0080 3.3461 0.5657 31 1 3.3525 3.3308 -1.0891 32 1 6.0604 2.1922 -0.2609 33 1 5.8103 3.7617 -1.0625 34 1 7.3531 1.4139 -2.1866 35 1 7.1038 2.9835 -2.9882 36 1 8.3310 0.2993 -6.6490 37 1 4.1399 1.6529 2.9838 38 1 2.5976 1.8325 2.0917 39 1 3.0552 -0.1972 3.9333 40 1 1.9387 -0.3735 2.5450 41 1 3.1755 -1.0033 0.2841 42 1 4.9494 -1.1587 0.4706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385342803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = -62.330167 kcal Electronic energy + Delta-G solvation = -20392.350751 eV Core-core repulsion = 17373.858894 eV Total energy + Delta-G solvation = -3018.491857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50536 -37.34569 -36.21689 -33.54159 -32.55544 -31.07588 -29.39265 -28.61714 -27.37207 -25.12374 -23.25377 -22.25198 -21.78426 -20.98817 -19.53558 -17.29149 -16.81385 -16.65980 -15.77676 -15.46304 -14.97658 -14.60441 -14.44069 -14.17164 -14.01465 -13.67075 -13.23734 -12.99027 -12.58777 -12.31256 -12.17489 -12.09507 -11.97723 -11.57503 -11.42105 -11.28181 -11.04322 -10.90177 -10.78939 -10.53295 -10.44183 -10.24587 -9.82616 -9.39246 -9.12250 -8.78411 -8.40288 -8.14493 -6.07349 -4.05580 3.26795 3.33905 3.35564 3.72417 4.07530 4.38909 4.56448 4.63931 4.68257 4.85466 4.88879 5.00468 5.10382 5.13898 5.24061 5.33098 5.34101 5.42952 5.47056 5.52427 5.64450 5.70515 5.75919 5.79505 5.84853 5.88365 5.96371 6.05545 6.09447 6.14961 6.19314 6.29132 6.64193 6.66925 7.04741 7.18355 7.20957 7.65034 8.09878 8.73333 9.05911 9.52598 11.05863 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.004824 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.288502 B = 5802.843862 C = 6003.926629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.047 3.953 4 N -0.511 5.511 5 C 0.061 3.939 6 C 0.063 3.937 7 O -0.363 6.363 8 C 0.168 3.832 9 C -0.514 4.514 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.875 3.125 14 H -0.275 1.275 15 H -0.267 1.267 16 H -0.283 1.283 17 C 0.053 3.947 18 H 0.093 0.907 19 C -0.200 4.200 20 C 0.045 3.955 21 O -0.379 6.379 22 C 0.028 3.972 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.000 1.000 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 2.599 18.099 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C -0.081 4.081 4 N -0.234 5.234 5 C -0.067 4.067 6 C -0.015 4.015 7 O -0.281 6.281 8 C 0.092 3.908 9 C -0.552 4.552 10 H 0.101 0.899 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.702 3.298 14 H -0.200 1.200 15 H -0.192 1.192 16 H -0.208 1.208 17 C -0.056 4.056 18 H 0.111 0.889 19 C -0.239 4.239 20 C -0.032 4.032 21 O -0.298 6.298 22 C -0.048 4.048 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.927 2.001 17.510 20.737 hybrid contribution 1.062 1.156 0.922 1.820 sum -9.865 3.157 18.432 21.143 Atomic orbital electron populations 1.21761 0.95891 1.01668 1.01551 1.22220 0.95329 0.97042 1.03601 1.22387 0.87863 0.97528 1.00297 1.62037 1.04067 1.19032 1.38267 1.22128 0.96940 0.88814 0.98803 1.22333 0.95057 0.95964 0.88176 1.88010 1.31429 1.78406 1.30271 1.20580 0.81663 0.94721 0.93808 1.20890 0.96856 1.37166 1.00281 0.89916 1.24758 0.98660 0.94879 0.94669 1.69873 1.30157 1.42136 1.11380 0.86870 0.84389 0.79037 0.79547 1.20023 1.19181 1.20822 1.23119 0.99234 0.95789 0.87498 0.88876 1.23742 1.02155 0.99096 0.98867 1.23375 0.94020 0.87274 0.98507 1.89163 1.67038 1.48573 1.24979 1.24192 1.04205 0.92785 0.83606 0.92609 0.93224 0.92561 0.90214 0.90353 0.94146 0.90525 0.94031 0.89898 0.94626 0.94167 0.98199 0.98777 0.92442 0.90833 0.89213 0.89633 0.91959 0.88697 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.14 -1.59 4.28 -26.73 -0.11 -1.70 16 3 C 0.05 0.54 4.50 -3.83 -0.02 0.52 16 4 N -0.51 -7.20 4.39 -224.77 -0.99 -8.19 16 5 C 0.06 0.85 5.32 -3.82 -0.02 0.83 16 6 C 0.06 1.09 6.07 37.16 0.23 1.32 16 7 O -0.36 -8.48 10.23 -35.23 -0.36 -8.84 16 8 C 0.17 4.32 4.76 36.01 0.17 4.49 16 9 C -0.51 -15.48 9.99 -34.44 -0.34 -15.83 16 10 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 13 Si 0.87 21.67 27.47 -169.99 -4.67 17.01 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 C 0.05 0.69 2.95 -66.15 -0.20 0.50 16 18 H 0.09 1.31 6.28 -51.93 -0.33 0.98 16 19 C -0.20 -2.05 5.97 -25.16 -0.15 -2.20 16 20 C 0.05 0.46 7.01 37.93 0.27 0.73 16 21 O -0.38 -5.14 11.64 -35.23 -0.41 -5.55 16 22 C 0.03 0.39 6.71 37.93 0.25 0.64 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 27 H 0.08 0.85 2.57 -51.93 -0.13 0.71 16 28 H 0.04 0.40 5.21 -51.93 -0.27 0.13 16 29 H 0.08 0.90 7.89 -51.92 -0.41 0.49 16 30 H 0.04 0.48 7.89 -51.93 -0.41 0.07 16 31 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 32 H 0.04 0.60 6.52 -51.93 -0.34 0.26 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.00 0.01 7.20 -51.93 -0.37 -0.37 16 35 H -0.01 -0.13 7.57 -51.93 -0.39 -0.53 16 36 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.84 4.95 -51.93 -0.26 0.58 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 41 H 0.10 1.27 3.87 -51.93 -0.20 1.07 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -32.41 316.35 -7.33 -39.73 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.79 Total: -2.08 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 0.35 Total: -9.64 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.21 Total: -35.39 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.77 Total: -14.40 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.41 -7.33 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385342803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.598 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds