Wall clock time and date at job start Mon Mar 30 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.86946 * 2 1 4 4 O 1.43739 * 109.88133 * 238.83601 * 2 1 3 5 5 C 1.44377 * 106.97584 * 267.09133 * 4 2 1 6 6 C 1.55226 * 103.56557 * 320.01122 * 5 4 2 7 7 C 1.54097 * 109.87716 * 121.00240 * 2 1 3 8 8 O 1.42901 * 110.49072 * 358.58949 * 7 2 1 9 9 C 1.52999 * 110.49412 * 236.07254 * 7 2 1 10 10 N 1.46890 * 109.47676 * 186.84521 * 9 7 2 11 11 C 1.46901 * 111.00688 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48502 * 109.47140 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 H 1.08996 * 109.47567 * 298.99802 * 1 2 3 24 24 H 1.09004 * 109.46921 * 58.99215 * 1 2 3 25 25 H 1.08994 * 109.47009 * 178.99214 * 1 2 3 26 26 H 1.08995 * 110.61731 * 78.43986 * 5 4 2 27 27 H 1.08999 * 110.61585 * 201.28204 * 5 4 2 28 28 H 1.09006 * 110.89303 * 278.74791 * 6 5 4 29 29 H 1.08998 * 111.02535 * 155.07446 * 6 5 4 30 30 H 0.96700 * 114.00629 * 178.15002 * 8 7 2 31 31 H 1.09005 * 109.47077 * 66.84194 * 9 7 2 32 32 H 1.09002 * 109.46769 * 306.84905 * 9 7 2 33 33 H 1.00909 * 111.00262 * 56.04820 * 10 9 7 34 34 H 1.09002 * 109.46980 * 59.99769 * 11 10 9 35 35 H 1.09001 * 109.46628 * 300.00190 * 11 10 9 36 36 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 37 37 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 41 41 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 42 42 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 8 2.0188 -0.6995 -1.1566 5 6 2.2280 -2.0724 -0.7618 6 6 2.8316 -1.9534 0.6633 7 6 2.0539 -0.7464 1.2421 8 8 0.9655 -1.1948 2.0523 9 6 2.9883 0.1535 2.0533 10 7 3.6014 -0.6267 3.1364 11 6 4.5076 0.2066 3.9379 12 6 5.1260 -0.6390 5.0529 13 6 6.0703 0.2288 5.8872 14 6 6.6892 -0.6171 7.0018 15 6 7.6188 0.2379 7.8240 16 1 7.7548 1.2802 7.5760 17 6 8.2955 -0.3106 8.8927 18 7 9.1071 0.4354 9.6099 19 14 8.0596 -2.1132 9.3220 20 1 9.0586 -2.9315 8.5888 21 1 8.2420 -2.3020 10.7837 22 1 6.6907 -2.5392 8.9348 23 1 -0.3634 0.4982 0.8988 24 1 -0.3633 0.5294 -0.8808 25 1 -0.3633 -1.0275 -0.0181 26 1 1.2813 -2.6117 -0.7320 27 1 2.9274 -2.5639 -1.4381 28 1 3.8999 -1.7416 0.6166 29 1 2.6403 -2.8548 1.2455 30 1 1.2370 -1.6959 2.8336 31 1 2.4184 0.9798 2.4784 32 1 3.7688 0.5474 1.4024 33 1 4.0821 -1.4357 2.7720 34 1 3.9486 1.0335 4.3760 35 1 5.2986 0.6005 3.2998 36 1 5.6851 -1.4657 4.6144 37 1 4.3352 -1.0333 5.6909 38 1 5.5116 1.0557 6.3256 39 1 6.8611 0.6226 5.2487 40 1 5.8986 -1.0113 7.6403 41 1 7.2479 -1.4437 6.5630 42 1 9.5830 0.0497 10.3620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385345306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:48 Heat of formation + Delta-G solvation = -117.816915 kcal Electronic energy + Delta-G solvation = -19289.966522 eV Core-core repulsion = 16269.068579 eV Total energy + Delta-G solvation = -3020.897943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56394 -37.24421 -36.02776 -34.16881 -32.32060 -31.61746 -31.19312 -29.18317 -27.18726 -24.68667 -23.59288 -22.02529 -21.31333 -20.65068 -20.03116 -17.34514 -16.89896 -16.65611 -16.43239 -15.87826 -14.82241 -14.63713 -14.55238 -14.25065 -14.10826 -13.54317 -13.48261 -12.98651 -12.86338 -12.57713 -12.20318 -12.12605 -11.89652 -11.80127 -11.74252 -11.49866 -11.16579 -10.81346 -10.78254 -10.61036 -10.23522 -10.01721 -9.89673 -9.70215 -9.49370 -9.16151 -8.64877 -8.53242 -6.03818 -4.01625 3.30654 3.38072 3.42271 3.51426 3.74087 3.84027 4.19654 4.37233 4.45737 4.61141 4.77530 4.83755 5.03189 5.11455 5.21366 5.26964 5.30084 5.30593 5.34017 5.40027 5.50661 5.54481 5.69310 5.74159 5.77238 5.96693 6.04181 6.06748 6.31537 6.48858 6.61536 6.71399 6.77693 6.97428 7.15800 7.32314 7.44693 7.45536 7.80994 8.55145 9.01362 9.59018 11.09826 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.046874 B = 0.002958 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.201784 B = 9463.220975 C = 9610.754055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.085 3.915 3 H 0.100 0.900 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.183 4.183 7 C 0.111 3.889 8 O -0.545 6.545 9 C 0.036 3.964 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.118 4.118 13 C -0.101 4.101 14 C -0.014 4.014 15 C -0.521 4.521 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.386 0.614 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.338 0.662 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.046 -4.642 -20.369 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.118 0.882 4 O -0.290 6.290 5 C -0.027 4.027 6 C -0.221 4.221 7 C 0.069 3.931 8 O -0.352 6.352 9 C -0.093 4.093 10 N -0.323 5.323 11 C -0.069 4.069 12 C -0.156 4.156 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.190 1.190 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.236 0.764 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.774 -4.157 -20.445 26.770 hybrid contribution 1.185 -1.197 0.424 1.737 sum -15.589 -5.354 -20.021 25.933 Atomic orbital electron populations 1.21923 0.94318 1.02951 1.01930 1.22725 0.95379 0.96151 0.83099 0.88185 1.88938 1.86141 1.20991 1.32910 1.23533 1.00037 0.84322 0.94852 1.23854 1.00923 0.99625 0.97739 1.22436 0.86702 0.92938 0.91004 1.86469 1.32263 1.75720 1.40737 1.22612 0.97100 0.96749 0.92878 1.60498 1.37777 1.10303 1.23750 1.22070 0.93623 0.96279 0.94914 1.21672 0.99044 0.98433 0.96451 1.21417 0.97065 0.98263 0.97218 1.19565 0.95871 0.95723 0.93938 1.21190 1.24340 0.98114 1.12237 0.91136 1.25057 0.94754 0.97869 0.95976 1.69922 1.28873 1.36174 1.19482 0.86752 0.79166 0.85807 0.77403 1.20368 1.21418 1.18970 0.90973 0.92561 0.91981 0.91868 0.88881 0.89988 0.89115 0.76413 0.89802 0.94069 0.84387 0.90910 0.95216 0.92786 0.91575 0.92754 0.93057 0.96639 0.97235 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.56 37.16 0.32 -1.05 16 2 C 0.08 0.79 3.76 -26.16 -0.10 0.69 16 3 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 4 O -0.37 -3.85 11.19 -35.23 -0.39 -4.24 16 5 C 0.05 0.39 7.67 38.34 0.29 0.69 16 6 C -0.18 -1.40 5.47 -24.60 -0.13 -1.53 16 7 C 0.11 0.97 1.14 -89.09 -0.10 0.87 16 8 O -0.54 -5.06 11.22 -35.23 -0.40 -5.45 16 9 C 0.04 0.34 4.62 -3.83 -0.02 0.32 16 10 N -0.69 -7.14 6.11 -113.79 -0.70 -7.84 16 11 C 0.06 0.75 5.68 -3.83 -0.02 0.73 16 12 C -0.12 -1.79 5.47 -26.74 -0.15 -1.94 16 13 C -0.10 -1.97 5.15 -26.73 -0.14 -2.10 16 14 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 15 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 26 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 29 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.39 3.04 8.73 45.56 0.40 3.44 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 3.21 7.38 -39.29 -0.29 2.92 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -31.34 333.12 -7.87 -39.21 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.92 Total: 0.87 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.59 Total: -17.34 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.08 Total: -35.29 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.79 Total: -9.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.34 -7.87 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385345306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.609 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds