Wall clock time and date at job start Mon Mar 30 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.98949 * 2 1 4 4 O 1.43745 * 109.87813 * 238.92053 * 2 1 3 5 5 C 1.44384 * 106.97494 * 214.05938 * 4 2 1 6 6 C 1.54993 * 103.48982 * 40.06134 * 5 4 2 7 7 C 1.54103 * 109.88091 * 121.08772 * 2 1 3 8 8 O 1.42891 * 110.60195 * 240.18468 * 7 2 1 9 9 C 1.52997 * 110.48483 * 2.77799 * 7 2 1 10 10 N 1.46907 * 109.46765 * 176.21948 * 9 7 2 11 11 C 1.46902 * 110.99665 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46901 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 H 1.08999 * 109.47234 * 298.91210 * 1 2 3 24 24 H 1.09000 * 109.47439 * 58.91209 * 1 2 3 25 25 H 1.08997 * 109.47390 * 178.91062 * 1 2 3 26 26 H 1.08993 * 110.62203 * 281.55935 * 5 4 2 27 27 H 1.09006 * 110.61550 * 158.55584 * 5 4 2 28 28 H 1.09001 * 110.90770 * 204.77679 * 6 5 4 29 29 H 1.09005 * 110.93890 * 81.18701 * 6 5 4 30 30 H 0.96698 * 114.00406 * 181.91989 * 8 7 2 31 31 H 1.08995 * 109.47319 * 56.22218 * 9 7 2 32 32 H 1.08993 * 109.46983 * 296.21849 * 9 7 2 33 33 H 1.00898 * 110.99982 * 303.95153 * 10 9 7 34 34 H 1.09001 * 109.46712 * 60.00151 * 11 10 9 35 35 H 1.09002 * 109.47411 * 300.00262 * 11 10 9 36 36 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 37 37 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 38 38 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 39 39 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 -1.1578 5 6 3.2379 -1.3640 -0.7649 6 6 2.9196 -1.8915 0.6574 7 6 2.0540 -0.7483 1.2411 8 8 2.8504 0.1182 2.0515 9 6 0.8898 -1.3191 2.0533 10 7 1.4161 -2.1029 3.1789 11 6 0.3241 -2.6673 3.9833 12 6 0.9101 -3.4754 5.1429 13 6 -0.2272 -4.0638 5.9804 14 6 0.3587 -4.8713 7.1403 15 6 -0.7614 -5.4514 7.9649 16 1 -1.7885 -5.2633 7.6889 17 6 -0.4751 -6.2232 9.0709 18 7 0.7757 -6.4527 9.4066 19 14 -1.8635 -6.9417 10.0935 20 1 -3.1680 -6.5385 9.5095 21 1 -1.7601 -8.4231 10.0973 22 1 -1.7661 -6.4351 11.4859 23 1 -0.3634 0.4968 0.8996 24 1 -0.3634 0.5306 -0.8800 25 1 -0.3634 -1.0274 -0.0195 26 1 4.0684 -0.6588 -0.7357 27 1 3.4584 -2.1907 -1.4403 28 1 3.8332 -2.0225 1.2372 29 1 2.3542 -2.8222 0.6102 30 1 3.2295 -0.3106 2.8309 31 1 0.2825 -1.9615 1.4157 32 1 0.2776 -0.5019 2.4344 33 1 2.0389 -2.8276 2.8550 34 1 -0.2875 -3.3190 3.3593 35 1 -0.2919 -1.8592 4.3778 36 1 1.5219 -2.8240 5.7670 37 1 1.5257 -4.2835 4.7481 38 1 -0.8433 -3.2559 6.3752 39 1 -0.8387 -4.7153 5.3561 40 1 0.9750 -5.6792 6.7458 41 1 0.9700 -4.2197 7.7646 42 1 0.9771 -6.9960 10.1846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385345307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:50 Heat of formation + Delta-G solvation = -118.160780 kcal Electronic energy + Delta-G solvation = -19305.573690 eV Core-core repulsion = 16284.660836 eV Total energy + Delta-G solvation = -3020.912854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56315 -37.16913 -35.93927 -34.10567 -32.63779 -31.94620 -31.12154 -28.54072 -26.22676 -24.95391 -23.70228 -22.71775 -21.41626 -20.23433 -19.77568 -17.51294 -16.45477 -16.36481 -16.13357 -15.81729 -15.67056 -14.77550 -14.51124 -14.36890 -14.00846 -13.45864 -13.17612 -12.80086 -12.68946 -12.57019 -12.30056 -11.94246 -11.83197 -11.69384 -11.53473 -11.44379 -11.02668 -10.79230 -10.59432 -10.50363 -10.45137 -10.17721 -9.98322 -9.66226 -9.27677 -9.00982 -8.55314 -8.34293 -5.99320 -4.01524 3.30850 3.38235 3.42441 3.48842 3.75488 3.90251 4.19669 4.41421 4.46545 4.70775 4.77522 4.89631 5.00157 5.12536 5.24687 5.29109 5.33177 5.36324 5.38648 5.45282 5.51249 5.55657 5.67518 5.72626 5.83889 5.88617 6.09248 6.18058 6.46010 6.51325 6.77598 6.86498 6.94609 7.17640 7.23830 7.48619 7.69463 7.84597 8.01593 8.44483 9.06187 9.62537 11.12068 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.048900 B = 0.002860 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.461887 B = 9786.664613 C = 9993.220977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.086 3.914 3 H 0.081 0.919 4 O -0.372 6.372 5 C 0.050 3.950 6 C -0.185 4.185 7 C 0.110 3.890 8 O -0.550 6.550 9 C 0.036 3.964 10 N -0.694 5.694 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.390 0.610 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.338 0.662 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 11.528 -19.750 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 H 0.099 0.901 4 O -0.292 6.292 5 C -0.027 4.027 6 C -0.223 4.223 7 C 0.068 3.932 8 O -0.358 6.358 9 C -0.094 4.094 10 N -0.325 5.325 11 C -0.068 4.068 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.239 0.761 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.587 12.420 -19.870 23.706 hybrid contribution -0.703 -1.669 0.731 1.953 sum 2.885 10.751 -19.140 22.141 Atomic orbital electron populations 1.22040 0.93023 1.03207 1.02882 1.22586 0.95130 0.96354 0.83125 0.90075 1.88912 1.39819 1.67820 1.32625 1.23494 0.87799 0.96443 0.94924 1.23839 1.01455 0.99209 0.97791 1.22474 0.90440 0.89332 0.90991 1.86413 1.68516 1.39714 1.41121 1.22761 0.96162 0.98310 0.92166 1.60481 1.20137 1.29353 1.22543 1.22078 0.92300 0.97607 0.94787 1.21642 0.99406 0.98432 0.95856 1.21591 0.96330 0.98989 0.97821 1.19092 0.96118 0.94543 0.91864 1.21325 0.93124 1.30845 1.10529 0.92724 1.25039 0.95447 0.96492 0.97593 1.69981 1.17454 1.39303 1.26818 0.86551 0.82517 0.78832 0.80200 1.19763 1.21039 1.20997 0.90600 0.91564 0.91444 0.91746 0.88819 0.89100 0.89927 0.76055 0.93755 0.89680 0.84442 0.95413 0.91086 0.91579 0.92784 0.93395 0.93672 0.96760 0.96592 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.40 37.15 0.31 -0.98 16 2 C 0.09 0.85 3.88 -26.16 -0.10 0.75 16 3 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 4 O -0.37 -4.01 11.19 -35.23 -0.39 -4.41 16 5 C 0.05 0.42 7.72 38.21 0.29 0.72 16 6 C -0.18 -1.52 5.49 -24.72 -0.14 -1.66 16 7 C 0.11 1.04 1.17 -89.09 -0.10 0.94 16 8 O -0.55 -5.79 12.98 -35.23 -0.46 -6.24 16 9 C 0.04 0.35 3.62 -3.82 -0.01 0.34 16 10 N -0.69 -7.70 6.01 -113.78 -0.68 -8.38 16 11 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 12 C -0.12 -1.89 5.47 -26.73 -0.15 -2.04 16 13 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 14 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H 0.08 0.58 6.93 -51.93 -0.36 0.22 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.57 6.61 -51.93 -0.34 0.22 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 30 H 0.39 3.48 8.62 45.56 0.39 3.87 16 31 H 0.04 0.43 6.60 -51.93 -0.34 0.09 16 32 H 0.08 0.88 6.95 -51.93 -0.36 0.52 16 33 H 0.34 3.48 7.60 -39.29 -0.30 3.18 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -31.13 333.12 -8.14 -39.27 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.74 Total: 1.23 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.60 Total: -16.81 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.05 Total: -34.82 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.85 Total: -10.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.13 -8.14 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385345307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.890 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds