Wall clock time and date at job start Mon Mar 30 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.98949 * 2 1 4 4 O 1.43745 * 109.87813 * 238.92053 * 2 1 3 5 5 C 1.44384 * 106.97494 * 214.05938 * 4 2 1 6 6 C 1.54993 * 103.48982 * 40.06134 * 5 4 2 7 7 C 1.54103 * 109.88091 * 121.08772 * 2 1 3 8 8 O 1.42891 * 110.60195 * 240.18468 * 7 2 1 9 9 C 1.52997 * 110.48483 * 2.77799 * 7 2 1 10 10 N 1.46907 * 109.46765 * 176.21948 * 9 7 2 11 11 C 1.46902 * 110.99665 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46901 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 H 1.08999 * 109.47234 * 298.91210 * 1 2 3 24 24 H 1.09000 * 109.47439 * 58.91209 * 1 2 3 25 25 H 1.08997 * 109.47390 * 178.91062 * 1 2 3 26 26 H 1.08993 * 110.62203 * 281.55935 * 5 4 2 27 27 H 1.09006 * 110.61550 * 158.55584 * 5 4 2 28 28 H 1.09001 * 110.90770 * 204.77679 * 6 5 4 29 29 H 1.09005 * 110.93890 * 81.18701 * 6 5 4 30 30 H 0.96698 * 114.00406 * 181.91989 * 8 7 2 31 31 H 1.08995 * 109.47319 * 56.22218 * 9 7 2 32 32 H 1.08993 * 109.46983 * 296.21849 * 9 7 2 33 33 H 1.00898 * 110.99982 * 303.95153 * 10 9 7 34 34 H 1.09001 * 109.46712 * 60.00151 * 11 10 9 35 35 H 1.09002 * 109.47411 * 300.00262 * 11 10 9 36 36 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 37 37 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 38 38 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 39 39 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 40 40 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 -1.1578 5 6 3.2379 -1.3640 -0.7649 6 6 2.9196 -1.8915 0.6574 7 6 2.0540 -0.7483 1.2411 8 8 2.8504 0.1182 2.0515 9 6 0.8898 -1.3191 2.0533 10 7 1.4161 -2.1029 3.1789 11 6 0.3241 -2.6673 3.9833 12 6 0.9101 -3.4754 5.1429 13 6 -0.2272 -4.0638 5.9804 14 6 0.3587 -4.8713 7.1403 15 6 -0.7614 -5.4514 7.9649 16 1 -1.7885 -5.2633 7.6889 17 6 -0.4751 -6.2232 9.0709 18 7 0.7757 -6.4527 9.4066 19 14 -1.8635 -6.9417 10.0935 20 1 -3.1680 -6.5385 9.5095 21 1 -1.7601 -8.4231 10.0973 22 1 -1.7661 -6.4351 11.4859 23 1 -0.3634 0.4968 0.8996 24 1 -0.3634 0.5306 -0.8800 25 1 -0.3634 -1.0274 -0.0195 26 1 4.0684 -0.6588 -0.7357 27 1 3.4584 -2.1907 -1.4403 28 1 3.8332 -2.0225 1.2372 29 1 2.3542 -2.8222 0.6102 30 1 3.2295 -0.3106 2.8309 31 1 0.2825 -1.9615 1.4157 32 1 0.2776 -0.5019 2.4344 33 1 2.0389 -2.8276 2.8550 34 1 -0.2875 -3.3190 3.3593 35 1 -0.2919 -1.8592 4.3778 36 1 1.5219 -2.8240 5.7670 37 1 1.5257 -4.2835 4.7481 38 1 -0.8433 -3.2559 6.3752 39 1 -0.8387 -4.7153 5.3561 40 1 0.9750 -5.6792 6.7458 41 1 0.9700 -4.2197 7.7646 42 1 0.9771 -6.9960 10.1846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385345307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:50 Heat of formation + Delta-G solvation = -141.276407 kcal Electronic energy + Delta-G solvation = -19306.576058 eV Core-core repulsion = 16284.660836 eV Total energy + Delta-G solvation = -3021.915222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30039 -38.11118 -37.01931 -35.70185 -34.12825 -32.99125 -32.01124 -30.07047 -27.36670 -26.10034 -24.94420 -23.52525 -22.74642 -21.80543 -20.66552 -18.48638 -18.23222 -17.20190 -17.07765 -16.79971 -16.51393 -16.40617 -15.75400 -15.59234 -14.88817 -14.47695 -14.29483 -14.24726 -13.71136 -13.54726 -13.45621 -13.23901 -13.07847 -12.83199 -12.65547 -12.52841 -12.30798 -12.23518 -12.10474 -12.09830 -11.55249 -11.36795 -11.29135 -11.05540 -10.87464 -10.69604 -10.55952 -9.45047 -8.20320 -6.31518 1.39642 1.39884 1.53338 2.40669 2.79881 2.98532 3.06946 3.12622 3.49354 3.69114 3.97153 4.07363 4.12695 4.16622 4.26110 4.30502 4.46105 4.53287 4.56194 4.62963 4.67808 4.70070 4.79891 4.83193 4.90984 4.93710 5.01515 5.02651 5.22201 5.24608 5.27455 5.36272 5.55510 5.78472 5.81008 5.87001 5.95272 6.25941 6.37142 6.78043 6.86493 7.37946 8.91686 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.048900 B = 0.002860 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.461887 B = 9786.664613 C = 9993.220977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 H 0.072 0.928 4 O -0.390 6.390 5 C 0.045 3.955 6 C -0.181 4.181 7 C 0.110 3.890 8 O -0.562 6.562 9 C 0.041 3.959 10 N -0.693 5.693 11 C 0.072 3.928 12 C -0.105 4.105 13 C -0.098 4.098 14 C 0.023 3.977 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.395 0.605 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.344 0.656 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 11.486 -20.362 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.090 0.910 4 O -0.310 6.310 5 C -0.031 4.031 6 C -0.219 4.219 7 C 0.069 3.931 8 O -0.371 6.371 9 C -0.088 4.088 10 N -0.325 5.325 11 C -0.057 4.057 12 C -0.143 4.143 13 C -0.136 4.136 14 C -0.014 4.014 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.635 12.385 -20.498 24.094 hybrid contribution -0.344 -1.639 0.905 1.904 sum 2.291 10.745 -19.593 22.463 Atomic orbital electron populations 1.22035 0.92050 1.03397 1.03436 1.22643 0.95983 0.95869 0.83140 0.91023 1.88893 1.40711 1.68101 1.33271 1.23658 0.87136 0.96891 0.95451 1.23827 1.01682 0.98748 0.97636 1.22470 0.90411 0.89582 0.90675 1.86402 1.68717 1.40430 1.41568 1.22724 0.96330 0.98035 0.91715 1.60383 1.19496 1.29474 1.23120 1.21834 0.92622 0.97252 0.93947 1.21454 0.97854 0.98582 0.96385 1.21403 0.97443 0.98412 0.96364 1.19023 0.95168 0.93963 0.93293 1.21783 0.93933 1.31226 1.11279 0.92264 1.26012 0.98201 0.96860 0.98969 1.70109 1.19765 1.40042 1.27540 0.85394 0.79315 0.78037 0.78282 1.18562 1.20317 1.20348 0.89964 0.91161 0.91356 0.91608 0.87235 0.88132 0.89531 0.75416 0.93138 0.90004 0.83704 0.94767 0.91065 0.92413 0.92697 0.93152 0.93162 0.99148 0.99213 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.40 71.98 0.60 -1.75 16 2 C 0.08 1.53 3.88 30.97 0.12 1.65 16 3 H 0.07 1.45 7.97 -2.39 -0.02 1.43 16 4 O -0.39 -7.96 11.19 -148.98 -1.67 -9.62 16 5 C 0.04 0.69 7.72 72.66 0.56 1.25 16 6 C -0.18 -2.65 5.49 31.90 0.18 -2.48 16 7 C 0.11 1.93 1.17 -9.80 -0.01 1.92 16 8 O -0.56 -11.16 12.98 -148.98 -1.93 -13.10 16 9 C 0.04 0.74 3.62 86.30 0.31 1.05 16 10 N -0.69 -14.05 6.01 -513.88 -3.09 -17.13 16 11 C 0.07 1.79 5.69 86.30 0.49 2.28 16 12 C -0.10 -3.34 5.47 30.59 0.17 -3.17 16 13 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 19 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H 0.08 1.15 6.93 -2.39 -0.02 1.13 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.04 6.61 -2.39 -0.02 1.02 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.09 1.21 7.69 -2.38 -0.02 1.19 16 30 H 0.39 6.56 8.62 -74.06 -0.64 5.92 16 31 H 0.05 0.87 6.60 -2.39 -0.02 0.86 16 32 H 0.08 1.55 6.95 -2.39 -0.02 1.53 16 33 H 0.34 6.36 7.60 -89.70 -0.68 5.68 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -66.17 333.12 -1.28 -67.45 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.33 Total: 15.51 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.42 Total: -32.51 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.80 Total: -74.22 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -3.60 Total: -22.72 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.17 -1.28 -67.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385345307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.829 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds