Wall clock time and date at job start Mon Mar 30 2020 04:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.05874 * 2 1 4 4 C 1.54265 * 110.03104 * 121.42345 * 2 1 3 5 5 C 1.54888 * 104.19779 * 95.67098 * 4 2 1 6 6 C 1.54965 * 102.77650 * 37.91376 * 5 4 2 7 7 C 1.53883 * 110.02753 * 238.58839 * 2 1 3 8 8 O 1.42898 * 110.03389 * 0.04902 * 7 2 1 9 9 C 1.52999 * 110.02906 * 121.43382 * 7 2 1 10 10 N 1.46906 * 109.46897 * 179.30801 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47046 * 65.00004 * 12 11 10 14 14 C 1.42901 * 113.99910 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47277 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00302 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99714 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47441 * 59.99411 * 19 17 15 21 21 H 1.48503 * 109.47273 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47098 * 299.99372 * 19 17 15 23 23 H 1.09000 * 109.47857 * 181.41175 * 1 2 3 24 24 H 1.09008 * 109.46927 * 301.41287 * 1 2 3 25 25 H 1.09005 * 109.47306 * 61.40946 * 1 2 3 26 26 H 1.08998 * 110.48484 * 214.35124 * 4 2 1 27 27 H 1.08997 * 110.48812 * 336.85819 * 4 2 1 28 28 H 1.09000 * 110.75796 * 156.25265 * 5 4 2 29 29 H 1.08997 * 110.75765 * 279.63132 * 5 4 2 30 30 H 1.09001 * 110.53148 * 203.43310 * 6 5 4 31 31 H 1.09002 * 110.47862 * 80.76452 * 6 5 4 32 32 H 0.96695 * 114.00061 * 180.69568 * 8 7 2 33 33 H 1.09000 * 109.47486 * 59.30825 * 9 7 2 34 34 H 1.09001 * 109.47362 * 299.30103 * 9 7 2 35 35 H 1.00902 * 110.99923 * 303.95801 * 10 9 7 36 36 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 37 37 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 38 38 H 1.08997 * 109.46702 * 184.99892 * 12 11 10 39 39 H 1.09002 * 109.47126 * 304.99895 * 12 11 10 40 40 H 1.09001 * 109.47039 * 299.99914 * 14 13 12 41 41 H 1.09003 * 109.47349 * 59.99836 * 14 13 12 42 42 H 0.96998 * 120.00202 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 1.2368 5 6 2.3279 -2.1903 0.7189 6 6 2.8870 -1.9414 -0.7048 7 6 2.0570 -0.7535 -1.2339 8 8 0.9633 -1.2319 -2.0194 9 6 2.9408 0.1705 -2.0742 10 7 3.4502 -0.5655 -3.2391 11 6 4.3044 0.2923 -4.0713 12 6 4.8153 -0.5076 -5.2714 13 8 3.7137 -0.8687 -6.1069 14 6 4.0839 -1.6223 -7.2633 15 6 2.8513 -1.9461 -8.0676 16 1 1.8822 -1.6105 -7.7293 17 6 2.9607 -2.6719 -9.2348 18 7 4.1408 -3.0811 -9.6465 19 14 1.4328 -3.0739 -10.2314 20 1 0.7711 -1.8133 -10.6534 21 1 1.8175 -3.8569 -11.4331 22 1 0.4951 -3.8708 -9.4001 23 1 -0.3635 -1.0273 0.0253 24 1 -0.3633 0.5357 0.8771 25 1 -0.3634 0.4918 -0.9024 26 1 2.9810 -0.3003 1.5966 27 1 1.3070 -0.7677 2.0263 28 1 3.0674 -2.6933 1.3420 29 1 1.4030 -2.7652 0.6749 30 1 2.7388 -2.8199 -1.3327 31 1 3.9437 -1.6779 -0.6588 32 1 1.2308 -1.7252 -2.8068 33 1 3.7783 0.5200 -1.4706 34 1 2.3548 1.0251 -2.4123 35 1 3.9426 -1.3986 -2.9534 36 1 3.7276 1.1476 -4.4231 37 1 5.1514 0.6430 -3.4818 38 1 5.5187 0.1004 -5.8402 39 1 5.3160 -1.4098 -4.9202 40 1 4.7720 -1.0371 -7.8734 41 1 4.5697 -2.5476 -6.9538 42 1 4.2179 -3.5913 -10.4678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385778281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:10 Heat of formation + Delta-G solvation = -118.439930 kcal Electronic energy + Delta-G solvation = -19691.080856 eV Core-core repulsion = 16670.155897 eV Total energy + Delta-G solvation = -3020.924959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78487 -37.05232 -35.35019 -34.57283 -32.64665 -31.18783 -30.08659 -27.64384 -26.51455 -25.73478 -23.04082 -22.28171 -21.64640 -20.70328 -19.39483 -16.68472 -16.23498 -16.00832 -15.78030 -15.72955 -15.08369 -14.80888 -14.21823 -13.82113 -13.63708 -13.32361 -13.03537 -12.81592 -12.64482 -12.49627 -12.30182 -11.77186 -11.61141 -11.37676 -11.24920 -11.06603 -10.81408 -10.77045 -10.73393 -10.66937 -10.56387 -10.29621 -9.97073 -9.65031 -9.06667 -8.77355 -8.27581 -8.11015 -6.06848 -4.07929 3.36051 3.38134 3.42740 4.10565 4.21485 4.37639 4.39177 4.64307 4.76106 4.89653 5.09411 5.17120 5.19867 5.29445 5.29693 5.43691 5.46142 5.46932 5.55608 5.65156 5.70970 5.79321 5.81144 5.86133 5.90889 6.00517 6.04813 6.08437 6.14663 6.22355 6.30195 6.42969 7.08029 7.14567 7.46615 7.48467 7.84846 7.96758 8.20697 8.64903 9.06492 9.56910 11.04834 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.003872 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.420335 B = 7230.050612 C = 7706.435220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.153 4.153 7 C 0.140 3.860 8 O -0.550 6.550 9 C 0.036 3.964 10 N -0.677 5.677 11 C 0.067 3.933 12 C 0.065 3.935 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.387 0.613 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.337 0.663 36 H 0.078 0.922 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.033 0.967 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 5.027 21.158 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.191 4.191 7 C 0.098 3.902 8 O -0.358 6.358 9 C -0.094 4.094 10 N -0.308 5.308 11 C -0.062 4.062 12 C -0.013 4.013 13 O -0.299 6.299 14 C 0.120 3.880 15 C -0.550 4.550 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.910 5.386 21.111 21.871 hybrid contribution 0.962 -0.540 -0.639 1.275 sum -0.948 4.846 20.472 21.059 Atomic orbital electron populations 1.21498 0.93803 1.02263 1.00870 1.21751 0.97369 0.98562 0.92595 0.90754 1.22453 1.00665 0.95696 0.97060 1.22432 1.00909 0.96677 0.95708 1.23106 0.99396 0.99151 0.97424 1.21708 0.86229 0.92076 0.90170 1.86440 1.32521 1.75583 1.41210 1.22730 0.97620 0.97544 0.91512 1.60248 1.42520 1.08441 1.19630 1.21969 0.94629 0.96456 0.93170 1.22228 0.90639 0.96930 0.91537 1.87956 1.30181 1.74512 1.37288 1.20179 0.96665 0.89491 0.81705 1.21033 0.93823 1.33910 1.06206 0.91511 1.24945 0.96651 0.95649 0.97287 1.69954 1.22903 1.37852 1.23354 0.86398 0.82509 0.78520 0.79062 1.20035 1.21243 1.19968 0.92174 0.93748 0.92095 0.91809 0.91368 0.91817 0.91183 0.90530 0.91478 0.76290 0.95145 0.90383 0.84424 0.90315 0.94896 0.94173 0.94851 0.98044 0.97921 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.08 37.16 0.30 -1.03 16 2 C -0.08 -0.84 3.16 -89.50 -0.28 -1.12 16 3 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 4 C -0.12 -1.03 6.37 -25.07 -0.16 -1.19 16 5 C -0.12 -1.08 6.91 -24.70 -0.17 -1.25 16 6 C -0.15 -1.54 5.08 -25.03 -0.13 -1.66 16 7 C 0.14 1.57 1.10 -89.50 -0.10 1.48 16 8 O -0.55 -7.45 11.12 -35.23 -0.39 -7.85 16 9 C 0.04 0.42 4.52 -3.82 -0.02 0.41 16 10 N -0.68 -9.49 5.86 -113.78 -0.67 -10.16 16 11 C 0.07 0.98 6.07 -3.82 -0.02 0.96 16 12 C 0.06 1.19 6.22 37.16 0.23 1.42 16 13 O -0.38 -9.24 10.27 -35.23 -0.36 -9.61 16 14 C 0.19 5.39 5.69 36.00 0.20 5.60 16 15 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 24 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.53 7.84 -51.93 -0.41 0.13 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 31 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 32 H 0.39 5.30 8.50 45.56 0.39 5.68 16 33 H 0.03 0.33 8.13 -51.93 -0.42 -0.10 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.34 4.43 7.67 -39.29 -0.30 4.13 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -31.49 336.54 -8.17 -39.66 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.98 Total: 2.75 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.56 Total: -10.48 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.07 Total: -36.69 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.75 Total: -17.45 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.49 -8.17 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385778281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.779 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds