Wall clock time and date at job start Mon Mar 30 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.27747 * 2 1 4 4 C 1.54946 * 110.30747 * 237.80639 * 2 1 3 5 5 C 1.55303 * 100.93840 * 277.52630 * 4 2 1 6 6 H 1.08999 * 111.02246 * 84.13770 * 5 4 2 7 7 N 1.46904 * 110.84613 * 207.67600 * 5 4 2 8 8 C 1.46904 * 110.99669 * 186.02539 * 7 5 4 9 9 C 1.46895 * 111.00045 * 309.98027 * 7 5 4 10 10 C 1.53005 * 109.46985 * 163.16567 * 9 7 5 11 11 O 1.42900 * 109.47328 * 67.45444 * 10 9 7 12 12 C 1.42901 * 113.99962 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.46917 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00385 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99749 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99745 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 119.99997 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47141 * 90.00042 * 17 15 13 19 19 H 1.48504 * 109.47059 * 209.99591 * 17 15 13 20 20 H 1.48501 * 109.47369 * 329.99656 * 17 15 13 21 21 C 1.54381 * 102.25764 * 325.86834 * 5 4 2 22 22 H 1.08995 * 109.90704 * 140.91303 * 21 5 4 23 23 C 1.53003 * 109.82908 * 261.84397 * 21 5 4 24 24 O 1.43236 * 107.58437 * 21.35147 * 21 5 4 25 25 H 1.09007 * 109.47165 * 299.36276 * 1 2 3 26 26 H 1.08999 * 109.47372 * 179.36365 * 1 2 3 27 27 H 1.08999 * 109.47326 * 59.36177 * 1 2 3 28 28 H 1.08997 * 111.13062 * 35.44971 * 4 2 1 29 29 H 1.09005 * 111.12765 * 159.61278 * 4 2 1 30 30 H 1.09006 * 109.47075 * 68.06682 * 8 7 5 31 31 H 1.09003 * 109.46720 * 188.05760 * 8 7 5 32 32 H 1.08990 * 109.47418 * 308.05995 * 8 7 5 33 33 H 1.09006 * 109.47155 * 283.16207 * 9 7 5 34 34 H 1.09000 * 109.47602 * 43.16332 * 9 7 5 35 35 H 1.08999 * 109.47008 * 187.45542 * 10 9 7 36 36 H 1.09002 * 109.46759 * 307.44925 * 10 9 7 37 37 H 1.08999 * 109.46891 * 300.00102 * 12 11 10 38 38 H 1.08999 * 109.46830 * 59.99858 * 12 11 10 39 39 H 0.96994 * 119.99703 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.46863 * 171.79762 * 23 21 5 41 41 H 1.08999 * 109.47319 * 291.79758 * 23 21 5 42 42 H 1.08998 * 109.47380 * 51.79832 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0677 -0.7742 -1.2297 5 6 1.9827 -2.2377 -0.7169 6 1 0.9824 -2.6455 -0.8624 7 7 2.9896 -3.0814 -1.3745 8 6 2.8203 -4.4918 -1.0000 9 6 2.9444 -2.9149 -2.8332 10 6 4.2367 -3.4559 -3.4485 11 8 4.2866 -4.8742 -3.2814 12 6 5.4605 -5.4824 -3.8237 13 6 5.4080 -6.9704 -3.5918 14 1 4.5630 -7.4080 -3.0810 15 6 6.4390 -7.7734 -4.0318 16 7 6.3934 -9.0721 -3.8289 17 14 7.9008 -7.0167 -4.9146 18 1 8.9422 -6.6486 -3.9220 19 1 8.4602 -7.9990 -5.8777 20 1 7.4623 -5.8009 -5.6460 21 6 2.2971 -2.0771 0.7860 22 1 1.6637 -2.7438 1.3710 23 6 3.7699 -2.4004 1.0455 24 8 2.0287 -0.7157 1.1412 25 1 -0.3634 0.5039 0.8957 26 1 -0.3634 -1.0276 -0.0114 27 1 -0.3634 0.5237 -0.8842 28 1 1.4274 -0.6247 -2.0990 29 1 3.0979 -0.4946 -1.4504 30 1 1.8913 -4.8716 -1.4253 31 1 3.6594 -5.0726 -1.3831 32 1 2.7846 -4.5776 0.0859 33 1 2.0929 -3.4639 -3.2354 34 1 2.8418 -1.8571 -3.0753 35 1 4.2622 -3.2141 -4.5110 36 1 5.0937 -3.0010 -2.9518 37 1 5.5118 -5.2826 -4.8940 38 1 6.3426 -5.0696 -3.3343 39 1 7.1184 -9.6370 -4.1388 40 1 4.0216 -2.1465 2.0753 41 1 3.9430 -3.4639 0.8808 42 1 4.3944 -1.8211 0.3655 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385786087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:05 Heat of formation + Delta-G solvation = -85.311375 kcal Electronic energy + Delta-G solvation = -20264.174198 eV Core-core repulsion = 17244.685802 eV Total energy + Delta-G solvation = -3019.488397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28488 -37.60544 -35.94008 -32.75657 -32.64273 -31.31882 -29.25112 -28.59817 -27.46625 -25.23909 -24.09481 -21.90105 -21.83066 -20.61606 -19.79091 -16.92200 -16.69932 -16.38861 -15.74716 -15.46174 -15.27605 -14.53000 -14.35268 -13.97715 -13.63307 -13.36252 -12.97894 -12.84752 -12.52307 -12.46146 -12.40218 -12.13868 -11.93966 -11.64480 -11.35669 -11.24692 -11.00607 -10.88736 -10.77161 -10.70047 -10.61350 -10.27341 -9.87422 -9.61327 -9.18807 -8.82844 -8.46337 -8.15104 -6.13209 -4.12240 3.24192 3.31256 3.32515 3.64550 3.96957 4.31195 4.34524 4.66089 4.68855 4.82291 4.99267 5.08654 5.08823 5.18732 5.23733 5.37945 5.47329 5.54108 5.59534 5.62588 5.71037 5.79231 5.81979 5.86842 5.93055 5.97612 6.01522 6.08219 6.21065 6.24138 6.54941 6.60026 6.79740 6.98806 7.01064 7.21442 7.28651 7.59313 8.00108 8.64688 8.97266 9.46396 10.99763 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.040939 B = 0.004129 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.778410 B = 6780.347672 C = 6946.207802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 H 0.093 0.907 4 C -0.147 4.147 5 C 0.051 3.949 6 H 0.053 0.947 7 N -0.520 5.520 8 C 0.015 3.985 9 C 0.057 3.943 10 C 0.063 3.937 11 O -0.377 6.377 12 C 0.168 3.832 13 C -0.518 4.518 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.086 3.914 22 H 0.070 0.930 23 C -0.144 4.144 24 O -0.374 6.374 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.001 0.999 38 H -0.001 1.001 39 H 0.266 0.734 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 18.109 5.631 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 H 0.111 0.889 4 C -0.185 4.185 5 C -0.058 4.058 6 H 0.071 0.929 7 N -0.245 5.245 8 C -0.132 4.132 9 C -0.071 4.071 10 C -0.015 4.015 11 O -0.297 6.297 12 C 0.093 3.907 13 C -0.556 4.556 14 H 0.100 0.900 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.028 3.972 22 H 0.088 0.912 23 C -0.201 4.201 24 O -0.294 6.294 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.040 0.960 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.923 18.046 6.055 21.023 hybrid contribution 0.118 0.015 -1.168 1.174 sum -8.806 18.061 4.886 20.679 Atomic orbital electron populations 1.22253 0.95751 1.02505 1.02240 1.22867 0.93582 0.96464 0.85200 0.88929 1.23402 1.02884 0.94115 0.98057 1.23199 0.94303 0.93678 0.94588 0.92869 1.62134 1.46584 1.08347 1.07404 1.22785 1.02927 0.87527 0.99979 1.22237 0.97536 1.00037 0.87303 1.22341 0.96837 0.84747 0.97594 1.87888 1.44375 1.17110 1.80302 1.20582 0.83363 0.94444 0.92306 1.20880 1.07625 0.88690 1.38426 0.90043 1.24770 0.97915 0.94689 0.95582 1.69876 1.33143 1.03688 1.46698 0.86849 0.83226 0.79465 0.80190 1.19903 1.20850 1.19149 1.22636 0.97681 0.83289 0.93572 0.91167 1.21943 0.94505 1.03073 1.00601 1.88472 1.85029 1.21986 1.33875 0.91914 0.92374 0.91704 0.90184 0.89224 0.96001 0.87128 0.92309 0.94029 0.90112 0.94116 0.93393 0.98146 0.98331 0.92376 0.93402 0.90541 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.53 37.16 0.35 -1.06 16 2 C 0.08 0.75 4.19 -25.71 -0.11 0.64 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.15 -1.45 4.50 -24.48 -0.11 -1.56 16 5 C 0.05 0.61 2.20 -65.77 -0.14 0.47 16 6 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16 7 N -0.52 -7.29 3.40 -232.54 -0.79 -8.08 16 8 C 0.01 0.23 8.25 60.07 0.50 0.73 16 9 C 0.06 0.79 5.35 -3.82 -0.02 0.77 16 10 C 0.06 1.07 6.22 37.16 0.23 1.30 16 11 O -0.38 -8.32 7.43 -35.23 -0.26 -8.59 16 12 C 0.17 4.18 4.76 36.00 0.17 4.35 16 13 C -0.52 -15.11 9.99 -34.44 -0.34 -15.45 16 14 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 15 C 0.07 2.10 5.47 -17.81 -0.10 2.01 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 17 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.09 1.05 3.58 -26.01 -0.09 0.96 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 C -0.14 -1.84 8.54 37.16 0.32 -1.53 16 24 O -0.37 -4.70 10.70 -35.23 -0.38 -5.08 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.06 0.52 7.46 -51.93 -0.39 0.13 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.68 7.77 -51.93 -0.40 0.27 16 29 H 0.09 0.94 7.93 -51.93 -0.41 0.52 16 30 H 0.02 0.34 8.02 -51.93 -0.42 -0.08 16 31 H 0.11 2.15 5.66 -51.93 -0.29 1.85 16 32 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 33 H 0.04 0.61 7.96 -51.93 -0.41 0.20 16 34 H 0.08 0.92 5.98 -51.93 -0.31 0.61 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 38 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.03 5.62 -51.93 -0.29 0.74 16 42 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -30.66 322.57 -7.19 -37.85 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.37 Total: -2.57 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 0.65 Total: -8.38 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.02 Total: -34.72 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.64 Total: -13.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.66 -7.19 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385786087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.463 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds