Wall clock time and date at job start Mon Mar 30 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.55021 * 2 1 4 4 C 1.54994 * 110.62002 * 237.12332 * 2 1 3 5 5 C 1.54806 * 102.09432 * 204.47037 * 4 2 1 6 6 H 1.08997 * 110.49243 * 262.07030 * 5 4 2 7 7 N 1.46903 * 110.48725 * 139.55294 * 5 4 2 8 8 C 1.46906 * 110.99618 * 84.42529 * 7 5 4 9 9 C 1.46894 * 111.00402 * 320.47150 * 7 5 4 10 10 C 1.53000 * 109.47403 * 200.68536 * 9 7 5 11 11 O 1.42901 * 109.46775 * 64.99788 * 10 9 7 12 12 C 1.42904 * 113.99591 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46892 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99906 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99898 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00065 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46982 * 90.00278 * 17 15 13 19 19 H 1.48504 * 109.47148 * 210.00192 * 17 15 13 20 20 H 1.48498 * 109.47301 * 330.00326 * 17 15 13 21 21 C 1.54100 * 104.18708 * 20.88337 * 5 4 2 22 22 H 1.09005 * 109.88308 * 242.60545 * 21 5 4 23 23 C 1.52997 * 109.88206 * 121.45208 * 21 5 4 24 24 O 1.43752 * 107.29248 * 2.02699 * 21 5 4 25 25 H 1.09005 * 109.46909 * 182.87709 * 1 2 3 26 26 H 1.08996 * 109.47501 * 302.87703 * 1 2 3 27 27 H 1.09000 * 109.47244 * 62.88291 * 1 2 3 28 28 H 1.09009 * 110.90623 * 86.27281 * 4 2 1 29 29 H 1.08999 * 110.93835 * 322.68539 * 4 2 1 30 30 H 1.08997 * 109.46561 * 300.06935 * 8 7 5 31 31 H 1.09003 * 109.47240 * 60.06907 * 8 7 5 32 32 H 1.08997 * 109.46922 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47501 * 80.68020 * 9 7 5 34 34 H 1.09000 * 109.46807 * 320.68636 * 9 7 5 35 35 H 1.08992 * 109.46849 * 305.00113 * 10 9 7 36 36 H 1.09001 * 109.47005 * 184.99434 * 10 9 7 37 37 H 1.08998 * 109.46867 * 60.00591 * 12 11 10 38 38 H 1.08996 * 109.47322 * 299.99868 * 12 11 10 39 39 H 0.96996 * 120.00490 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47405 * 50.02003 * 23 21 5 41 41 H 1.09002 * 109.47213 * 170.02402 * 23 21 5 42 42 H 1.09001 * 109.47271 * 290.01734 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7875 -1.2183 5 6 3.4796 -1.2155 -0.7254 6 1 4.2410 -0.5327 -1.1025 7 7 3.7734 -2.5928 -1.1433 8 6 4.3092 -2.6250 -2.5108 9 6 2.5824 -3.4445 -1.0244 10 6 3.0095 -4.9122 -0.9581 11 8 3.7564 -5.1372 0.2393 12 6 4.2049 -6.4845 0.3999 13 6 4.9774 -6.6065 1.6881 14 1 5.1120 -5.7419 2.3210 15 6 5.5115 -7.8223 2.0591 16 7 5.3472 -8.8754 1.2886 17 14 6.4684 -7.9737 3.6562 18 1 5.5384 -8.3265 4.7589 19 1 7.4975 -9.0354 3.5179 20 1 7.1300 -6.6798 3.9615 21 6 3.3840 -1.1266 0.8100 22 1 4.0854 -0.3799 1.1825 23 6 3.6937 -2.4904 1.4305 24 8 2.0384 -0.7370 1.1326 25 1 -0.3633 -1.0264 0.0516 26 1 -0.3634 0.5578 0.8630 27 1 -0.3634 0.4684 -0.9147 28 1 2.1509 -0.1443 -2.0953 29 1 1.4553 -1.6584 -1.4290 30 1 3.5781 -2.1987 -3.1975 31 1 5.2303 -2.0437 -2.5539 32 1 4.5176 -3.6564 -2.7951 33 1 1.9388 -3.2922 -1.8908 34 1 2.0380 -3.1831 -0.1170 35 1 3.6291 -5.1496 -1.8228 36 1 2.1245 -5.5485 -0.9593 37 1 4.8492 -6.7550 -0.4367 38 1 3.3446 -7.1531 0.4270 39 1 5.7232 -9.7306 1.5493 40 1 4.6223 -2.8777 1.0116 41 1 3.7990 -2.3830 2.5101 42 1 2.8801 -3.1821 1.2119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385786095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:10 Heat of formation + Delta-G solvation = -78.183632 kcal Electronic energy + Delta-G solvation = -20657.185317 eV Core-core repulsion = 17638.006003 eV Total energy + Delta-G solvation = -3019.179314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30827 -37.22496 -35.78286 -32.65742 -32.59405 -30.95265 -29.58311 -28.19846 -26.84252 -25.11997 -23.72835 -22.26502 -21.59580 -20.86541 -19.53609 -16.85325 -16.32785 -15.98322 -15.74185 -15.34706 -14.83054 -14.62292 -14.36045 -13.89255 -13.63774 -13.11652 -12.91249 -12.72211 -12.55051 -12.07080 -11.94166 -11.79627 -11.66266 -11.43411 -11.39826 -11.07359 -10.86442 -10.77124 -10.69848 -10.62844 -10.42358 -10.10381 -9.93435 -9.39273 -8.98450 -8.71251 -8.07293 -8.02295 -6.03754 -4.04190 3.35279 3.40183 3.45960 3.84000 3.97722 4.41152 4.55330 4.73686 4.83929 4.93022 5.08957 5.13916 5.26789 5.33073 5.39535 5.42516 5.51733 5.55151 5.64098 5.70845 5.75369 5.80701 5.89010 5.95044 5.99084 6.03283 6.12615 6.17334 6.34027 6.51623 6.70143 7.12620 7.17353 7.25650 7.26923 7.34376 7.52680 7.88312 8.25275 8.70306 9.10959 9.60531 11.08005 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.004985 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.445996 B = 5616.043219 C = 6035.667875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.065 0.935 4 C -0.191 4.191 5 C 0.056 3.944 6 H 0.088 0.912 7 N -0.511 5.511 8 C 0.024 3.976 9 C 0.050 3.950 10 C 0.069 3.931 11 O -0.374 6.374 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.078 3.922 22 H 0.064 0.936 23 C -0.137 4.137 24 O -0.372 6.372 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 16.968 -7.377 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.230 4.230 5 C -0.054 4.054 6 H 0.107 0.893 7 N -0.233 5.233 8 C -0.124 4.124 9 C -0.077 4.077 10 C -0.010 4.010 11 O -0.294 6.294 12 C 0.119 3.881 13 C -0.545 4.545 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.732 3.268 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.196 1.196 21 C 0.020 3.980 22 H 0.082 0.918 23 C -0.193 4.193 24 O -0.292 6.292 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.526 16.665 -6.742 19.125 hybrid contribution -0.006 -0.061 -0.299 0.305 sum -6.533 16.604 -7.040 19.182 Atomic orbital electron populations 1.21759 0.93508 1.03003 1.01980 1.22929 0.94963 0.94977 0.85558 0.91749 1.23970 0.98608 1.01636 0.98765 1.23159 0.95398 0.90629 0.96194 0.89340 1.62063 1.30800 1.07171 1.23260 1.22439 0.99033 1.02701 0.88254 1.22495 0.91127 0.93035 1.01074 1.22221 0.94944 0.93601 0.90215 1.87953 1.71680 1.31819 1.37924 1.20157 0.93353 0.77797 0.96748 1.21057 1.32801 0.95490 1.05137 0.91490 1.24933 0.96568 0.95410 0.97648 1.69967 1.46013 1.00426 1.37696 0.86381 0.79501 0.77848 0.83027 1.20571 1.21230 1.19613 1.22864 0.83456 0.98538 0.93114 0.91837 1.21970 1.05367 0.93348 0.98653 1.88954 1.28642 1.73129 1.38438 0.91720 0.91971 0.91546 0.90809 0.89403 0.96245 0.91591 0.90929 0.94292 0.88839 0.94762 0.94541 0.98056 0.98181 0.92823 0.88665 0.94142 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.66 37.16 0.36 -1.02 16 2 C 0.07 0.82 3.98 -25.68 -0.10 0.72 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.19 -2.05 5.66 -24.73 -0.14 -2.19 16 5 C 0.06 0.70 3.05 -66.18 -0.20 0.50 16 6 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 7 N -0.51 -7.37 3.13 -233.05 -0.73 -8.10 16 8 C 0.02 0.29 9.26 60.07 0.56 0.85 16 9 C 0.05 0.75 2.97 -3.83 -0.01 0.74 16 10 C 0.07 1.26 6.14 37.16 0.23 1.49 16 11 O -0.37 -8.77 7.99 -35.23 -0.28 -9.06 16 12 C 0.19 5.32 5.69 36.01 0.20 5.52 16 13 C -0.51 -14.93 9.43 -34.44 -0.32 -15.25 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.08 1.13 3.75 -26.16 -0.10 1.03 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.14 -2.39 7.52 37.16 0.28 -2.12 16 24 O -0.37 -5.49 10.89 -35.23 -0.38 -5.87 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.09 1.00 5.13 -51.93 -0.27 0.73 16 30 H 0.02 0.21 8.04 -51.93 -0.42 -0.21 16 31 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.07 0.96 6.75 -51.93 -0.35 0.61 16 33 H 0.04 0.50 6.84 -51.93 -0.36 0.15 16 34 H 0.09 1.52 5.07 -51.93 -0.26 1.26 16 35 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.49 4.32 -51.93 -0.22 1.27 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -31.14 322.19 -7.37 -38.51 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.20 Total: -2.72 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 0.65 Total: -8.21 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.01 Total: -34.62 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.67 Total: -14.93 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.14 -7.37 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385786095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.675 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds