Wall clock time and date at job start Mon Mar 30 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.55021 * 2 1 4 4 C 1.54994 * 110.62002 * 237.12332 * 2 1 3 5 5 C 1.54806 * 102.09432 * 204.47037 * 4 2 1 6 6 H 1.08997 * 110.49243 * 262.07030 * 5 4 2 7 7 N 1.46903 * 110.48725 * 139.55294 * 5 4 2 8 8 C 1.46906 * 110.99618 * 84.42529 * 7 5 4 9 9 C 1.46894 * 111.00402 * 320.47150 * 7 5 4 10 10 C 1.53000 * 109.47403 * 200.68536 * 9 7 5 11 11 O 1.42901 * 109.46775 * 64.99788 * 10 9 7 12 12 C 1.42904 * 113.99591 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46892 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99906 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99898 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00065 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46982 * 90.00278 * 17 15 13 19 19 H 1.48504 * 109.47148 * 210.00192 * 17 15 13 20 20 H 1.48498 * 109.47301 * 330.00326 * 17 15 13 21 21 C 1.54100 * 104.18708 * 20.88337 * 5 4 2 22 22 H 1.09005 * 109.88308 * 242.60545 * 21 5 4 23 23 C 1.52997 * 109.88206 * 121.45208 * 21 5 4 24 24 O 1.43752 * 107.29248 * 2.02699 * 21 5 4 25 25 H 1.09005 * 109.46909 * 182.87709 * 1 2 3 26 26 H 1.08996 * 109.47501 * 302.87703 * 1 2 3 27 27 H 1.09000 * 109.47244 * 62.88291 * 1 2 3 28 28 H 1.09009 * 110.90623 * 86.27281 * 4 2 1 29 29 H 1.08999 * 110.93835 * 322.68539 * 4 2 1 30 30 H 1.08997 * 109.46561 * 300.06935 * 8 7 5 31 31 H 1.09003 * 109.47240 * 60.06907 * 8 7 5 32 32 H 1.08997 * 109.46922 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47501 * 80.68020 * 9 7 5 34 34 H 1.09000 * 109.46807 * 320.68636 * 9 7 5 35 35 H 1.08992 * 109.46849 * 305.00113 * 10 9 7 36 36 H 1.09001 * 109.47005 * 184.99434 * 10 9 7 37 37 H 1.08998 * 109.46867 * 60.00591 * 12 11 10 38 38 H 1.08996 * 109.47322 * 299.99868 * 12 11 10 39 39 H 0.96996 * 120.00490 * 179.97438 * 16 15 13 40 40 H 1.08995 * 109.47405 * 50.02003 * 23 21 5 41 41 H 1.09002 * 109.47213 * 170.02402 * 23 21 5 42 42 H 1.09001 * 109.47271 * 290.01734 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0759 -0.7875 -1.2183 5 6 3.4796 -1.2155 -0.7254 6 1 4.2410 -0.5327 -1.1025 7 7 3.7734 -2.5928 -1.1433 8 6 4.3092 -2.6250 -2.5108 9 6 2.5824 -3.4445 -1.0244 10 6 3.0095 -4.9122 -0.9581 11 8 3.7564 -5.1372 0.2393 12 6 4.2049 -6.4845 0.3999 13 6 4.9774 -6.6065 1.6881 14 1 5.1120 -5.7419 2.3210 15 6 5.5115 -7.8223 2.0591 16 7 5.3472 -8.8754 1.2886 17 14 6.4684 -7.9737 3.6562 18 1 5.5384 -8.3265 4.7589 19 1 7.4975 -9.0354 3.5179 20 1 7.1300 -6.6798 3.9615 21 6 3.3840 -1.1266 0.8100 22 1 4.0854 -0.3799 1.1825 23 6 3.6937 -2.4904 1.4305 24 8 2.0384 -0.7370 1.1326 25 1 -0.3633 -1.0264 0.0516 26 1 -0.3634 0.5578 0.8630 27 1 -0.3634 0.4684 -0.9147 28 1 2.1509 -0.1443 -2.0953 29 1 1.4553 -1.6584 -1.4290 30 1 3.5781 -2.1987 -3.1975 31 1 5.2303 -2.0437 -2.5539 32 1 4.5176 -3.6564 -2.7951 33 1 1.9388 -3.2922 -1.8908 34 1 2.0380 -3.1831 -0.1170 35 1 3.6291 -5.1496 -1.8228 36 1 2.1245 -5.5485 -0.9593 37 1 4.8492 -6.7550 -0.4367 38 1 3.3446 -7.1531 0.4270 39 1 5.7232 -9.7306 1.5493 40 1 4.6223 -2.8777 1.0116 41 1 3.7990 -2.3830 2.5101 42 1 2.8801 -3.1821 1.2119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385786095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:10 Heat of formation + Delta-G solvation = -98.789842 kcal Electronic energy + Delta-G solvation = -20658.078870 eV Core-core repulsion = 17638.006003 eV Total energy + Delta-G solvation = -3020.072867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34994 -38.71324 -37.24451 -34.85386 -33.56125 -32.12402 -30.98250 -29.29834 -28.81488 -26.20883 -24.95860 -24.41323 -22.66310 -21.97373 -20.63500 -18.58840 -17.85300 -17.37912 -17.13250 -16.65525 -16.29417 -16.03480 -15.84116 -15.31554 -14.84985 -14.71066 -14.01734 -13.73562 -13.69030 -13.51976 -13.23695 -13.17494 -12.96877 -12.73893 -12.72292 -12.64014 -12.49253 -12.30438 -12.11324 -11.87158 -11.77975 -11.55937 -11.36614 -11.11281 -10.80390 -10.48378 -10.09019 -9.08669 -8.28177 -6.38807 1.40658 1.43221 1.55328 2.37201 2.84271 2.96992 3.05856 3.27540 3.64329 3.82641 3.96844 4.12675 4.19310 4.20567 4.29773 4.46963 4.51215 4.55130 4.60991 4.65116 4.68075 4.71805 4.79642 4.83377 4.90395 4.94361 4.98512 5.09022 5.14621 5.16090 5.25291 5.28365 5.36364 5.60347 5.82301 6.03210 6.06712 6.18793 6.24072 6.62856 6.92853 7.33326 8.84311 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.004985 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.445996 B = 5616.043219 C = 6035.667875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 H 0.082 0.918 4 C -0.181 4.181 5 C 0.059 3.941 6 H 0.109 0.891 7 N -0.536 5.536 8 C 0.026 3.974 9 C 0.065 3.935 10 C 0.059 3.941 11 O -0.381 6.381 12 C 0.210 3.790 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.978 3.022 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.265 1.265 21 C 0.079 3.921 22 H 0.074 0.926 23 C -0.127 4.127 24 O -0.397 6.397 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.039 0.961 37 H -0.020 1.020 38 H -0.021 1.021 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.028 0.972 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 18.811 -7.859 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.100 0.900 4 C -0.219 4.219 5 C -0.050 4.050 6 H 0.127 0.873 7 N -0.260 5.260 8 C -0.122 4.122 9 C -0.062 4.062 10 C -0.019 4.019 11 O -0.300 6.300 12 C 0.134 3.866 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.802 3.198 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.189 1.189 21 C 0.022 3.978 22 H 0.092 0.908 23 C -0.184 4.184 24 O -0.318 6.318 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.058 0.942 37 H -0.002 1.002 38 H -0.003 1.003 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.595 18.528 -7.246 20.959 hybrid contribution -0.043 -0.605 -0.207 0.640 sum -6.639 17.923 -7.452 20.515 Atomic orbital electron populations 1.21781 0.92420 1.02498 1.03342 1.23216 0.95895 0.95422 0.84498 0.90025 1.23911 0.96815 1.01724 0.99492 1.23174 0.97332 0.89843 0.94666 0.87302 1.61930 1.30710 1.08373 1.24943 1.22435 1.00102 1.02142 0.87483 1.22284 0.91660 0.90598 1.01660 1.22559 0.94452 0.96556 0.88344 1.87943 1.72331 1.29239 1.40491 1.19745 0.91940 0.79409 0.95466 1.21356 1.34104 0.95898 1.06094 0.92108 1.25903 0.97157 0.94692 1.01437 1.70074 1.46568 1.01066 1.39590 0.85252 0.78149 0.78238 0.78200 1.19484 1.20005 1.18930 1.22785 0.83913 0.96616 0.94534 0.90790 1.21781 1.03403 0.95224 0.98002 1.88926 1.28632 1.73845 1.40366 0.93008 0.91973 0.88991 0.88011 0.90134 0.93891 0.90492 0.92547 0.91336 0.90205 0.94471 0.94243 1.00229 1.00337 0.92239 0.90973 0.95300 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.66 71.98 0.70 -1.68 16 2 C 0.07 1.32 3.98 31.28 0.12 1.44 16 3 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.18 -3.29 5.66 31.89 0.18 -3.11 16 5 C 0.06 1.35 3.05 45.90 0.14 1.49 16 6 H 0.11 2.07 7.91 -2.39 -0.02 2.05 16 7 N -0.54 -14.85 3.13 -891.24 -2.79 -17.64 16 8 C 0.03 0.59 9.26 127.69 1.18 1.77 16 9 C 0.07 1.92 2.97 86.30 0.26 2.18 16 10 C 0.06 2.21 6.14 71.98 0.44 2.65 16 11 O -0.38 -18.57 7.99 -148.98 -1.19 -19.76 16 12 C 0.21 12.01 5.69 71.24 0.41 12.41 16 13 C -0.54 -32.54 9.43 25.60 0.24 -32.30 16 14 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.98 45.52 29.54 68.60 2.03 47.54 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.08 2.22 3.75 30.97 0.12 2.34 16 22 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 23 C -0.13 -4.59 7.52 71.98 0.54 -4.04 16 24 O -0.40 -11.32 10.89 -148.98 -1.62 -12.95 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.60 5.13 -2.39 -0.01 1.59 16 30 H 0.04 0.77 8.04 -2.39 -0.02 0.75 16 31 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 32 H 0.06 1.44 6.75 -2.39 -0.02 1.43 16 33 H 0.07 1.62 6.84 -2.39 -0.02 1.61 16 34 H 0.08 2.60 5.07 -2.39 -0.01 2.59 16 35 H 0.04 1.38 6.78 -2.39 -0.02 1.36 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H -0.02 -1.21 8.14 -2.39 -0.02 -1.22 16 38 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.07 2.91 6.99 -2.39 -0.02 2.89 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 2.32 4.32 -2.39 -0.01 2.31 16 Total: -1.00 -68.62 322.19 2.47 -66.15 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.98 Total: 9.59 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.79 Total: -16.03 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.51 Total: -74.56 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -2.81 Total: -32.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.62 2.47 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385786095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.637 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds