Wall clock time and date at job start Mon Mar 30 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.48309 * 2 1 4 4 C 1.53093 * 109.49387 * 120.02945 * 2 1 3 5 5 C 1.53179 * 109.15772 * 62.37746 * 4 2 1 6 6 H 1.09002 * 109.62148 * 297.06916 * 5 4 2 7 7 C 1.53004 * 109.54174 * 176.85055 * 5 4 2 8 8 N 1.46902 * 109.47422 * 175.44657 * 7 5 4 9 9 C 1.46894 * 110.99820 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.46764 * 180.02562 * 9 8 7 11 11 O 1.42899 * 109.47113 * 64.99856 * 10 9 8 12 12 C 1.42903 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.53178 * 109.03618 * 56.98630 * 5 4 2 22 22 C 1.53095 * 109.16023 * 303.01350 * 21 5 4 23 23 O 1.42899 * 109.41495 * 57.61425 * 22 21 5 24 24 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47103 * 300.02251 * 1 2 3 26 26 H 1.09005 * 109.47600 * 60.02115 * 1 2 3 27 27 H 1.08996 * 109.52289 * 302.47861 * 4 2 1 28 28 H 1.08998 * 109.52352 * 182.28418 * 4 2 1 29 29 H 1.08998 * 109.47305 * 55.44096 * 7 5 4 30 30 H 1.09000 * 109.46779 * 295.44656 * 7 5 4 31 31 H 1.00896 * 110.99723 * 56.03951 * 8 7 5 32 32 H 1.09000 * 109.47283 * 59.99980 * 9 8 7 33 33 H 1.09002 * 109.47562 * 299.99300 * 9 8 7 34 34 H 1.09007 * 109.46516 * 304.99789 * 10 9 8 35 35 H 1.09004 * 109.47113 * 185.00258 * 10 9 8 36 36 H 1.09002 * 109.47382 * 59.99956 * 12 11 10 37 37 H 1.09001 * 109.46938 * 299.99942 * 12 11 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.52434 * 62.92417 * 21 5 4 40 40 H 1.09002 * 109.51792 * 183.10835 * 21 5 4 41 41 H 1.09000 * 109.47544 * 177.59219 * 22 21 5 42 42 H 1.08995 * 109.47854 * 297.61188 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7222 1.2495 5 6 1.5761 -2.1814 1.2119 6 1 0.4872 -2.2196 1.2415 7 6 2.1474 -2.9315 2.4169 8 7 1.6140 -4.3001 2.4397 9 6 2.1425 -5.0521 3.5855 10 6 1.5661 -6.4694 3.5750 11 8 2.0339 -7.1652 2.4178 12 6 1.5510 -8.5059 2.3111 13 6 2.1037 -9.1409 1.0611 14 1 2.7585 -8.5771 0.4132 15 6 1.7741 -10.4419 0.7452 16 7 0.9771 -11.1285 1.5343 17 14 2.4598 -11.2291 -0.8039 18 1 3.3250 -10.2532 -1.5139 19 1 3.2602 -12.4255 -0.4385 20 1 1.3396 -11.6348 -1.6904 21 6 2.0769 -2.8321 -0.0812 22 6 1.5646 -2.0283 -1.2792 23 8 2.0065 -0.6740 -1.1666 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5135 -0.8902 27 1 1.6423 -0.2359 2.1398 28 1 3.1300 -0.6872 1.2707 29 1 1.8635 -2.4156 3.3341 30 1 3.2342 -2.9664 2.3412 31 1 1.8084 -4.7784 1.5728 32 1 1.8588 -4.5509 4.5110 33 1 3.2292 -5.1018 3.5175 34 1 0.4774 -6.4187 3.5531 35 1 1.8872 -6.9989 4.4720 36 1 0.4621 -8.4972 2.2628 37 1 1.8715 -9.0779 3.1819 38 1 0.7450 -12.0437 1.3118 39 1 3.1669 -2.8397 -0.0868 40 1 1.7042 -3.8546 -0.1423 41 1 1.9532 -2.4619 -2.2007 42 1 0.4751 -2.0553 -1.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388863769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:00 Heat of formation + Delta-G solvation = -116.404436 kcal Electronic energy + Delta-G solvation = -19506.245294 eV Core-core repulsion = 16485.408602 eV Total energy + Delta-G solvation = -3020.836693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01442 -37.31963 -35.97474 -33.56343 -32.65498 -32.20906 -29.37908 -28.20301 -26.82241 -24.95903 -23.62502 -22.36184 -21.63005 -21.29824 -19.33791 -16.65991 -16.39081 -16.16862 -16.02976 -15.40085 -15.35315 -14.65837 -14.42951 -14.28875 -14.08942 -13.65737 -13.32575 -13.09986 -12.72443 -12.41851 -11.98782 -11.88400 -11.83375 -11.67911 -11.37579 -11.22635 -11.03928 -10.79938 -10.76688 -10.63181 -10.46453 -10.13446 -10.00281 -9.53066 -9.10391 -8.84041 -8.21841 -8.18214 -6.12024 -4.13834 3.28196 3.34737 3.40821 3.72831 4.25206 4.34071 4.60411 4.63483 4.76225 4.83638 4.93546 5.00061 5.16005 5.24601 5.27887 5.32668 5.35192 5.43729 5.51144 5.56507 5.67203 5.71601 5.75350 5.80876 5.85905 5.96912 5.99285 6.06521 6.11633 6.22091 6.30180 6.36542 7.10374 7.11226 7.22211 7.42906 7.64638 7.78101 8.14236 8.56549 8.99580 9.51181 10.99559 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003867 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.602530 B = 7238.732098 C = 8109.883549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.098 0.902 4 C -0.143 4.143 5 C -0.088 4.088 6 H 0.083 0.917 7 C 0.064 3.936 8 N -0.688 5.688 9 C 0.066 3.934 10 C 0.062 3.938 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.514 4.514 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.155 4.155 22 C 0.058 3.942 23 O -0.381 6.381 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.355 0.645 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 21.073 0.082 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.029 3.971 3 H 0.116 0.884 4 C -0.181 4.181 5 C -0.106 4.106 6 H 0.101 0.899 7 C -0.065 4.065 8 N -0.322 5.322 9 C -0.064 4.064 10 C -0.016 4.016 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.553 4.553 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.193 4.193 22 C -0.018 4.018 23 O -0.300 6.300 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.175 0.825 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.254 21.225 0.152 21.227 hybrid contribution 0.813 -1.062 -0.480 1.421 sum 0.559 20.163 -0.328 20.174 Atomic orbital electron populations 1.22466 0.96433 1.03130 1.02461 1.22130 0.93478 0.96145 0.85319 0.88405 1.22204 1.01715 0.95913 0.98314 1.21231 1.01353 0.93680 0.94382 0.89873 1.21958 0.96442 0.90281 0.97849 1.60516 1.61928 1.02302 1.07439 1.21943 0.97238 0.93113 0.94081 1.22302 0.98053 0.91224 0.90043 1.87783 1.72753 1.29261 1.42192 1.20182 0.93998 0.76590 0.96974 1.21090 1.29550 0.97381 1.07244 0.91580 1.24951 0.95212 0.96803 0.97542 1.69973 1.35560 1.10596 1.37593 0.86295 0.78784 0.79103 0.82391 1.19500 1.20856 1.20803 1.22280 1.01767 1.00471 0.94782 1.22584 0.98892 0.81865 0.98492 1.87970 1.73806 1.25093 1.43089 0.91459 0.91575 0.92043 0.90941 0.91182 0.91412 0.95504 0.82483 0.90769 0.94856 0.93570 0.94165 0.97615 0.97830 0.92699 0.91295 0.89957 0.88916 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 8.65 37.15 0.32 -1.23 16 2 C 0.09 0.80 3.91 -26.69 -0.10 0.70 16 3 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.14 -1.30 4.93 -26.59 -0.13 -1.43 16 5 C -0.09 -0.94 2.17 -90.43 -0.20 -1.13 16 6 H 0.08 0.93 6.63 -51.93 -0.34 0.59 16 7 C 0.06 0.76 5.15 -3.82 -0.02 0.74 16 8 N -0.69 -10.20 6.50 -113.78 -0.74 -10.94 16 9 C 0.07 1.00 6.11 -3.82 -0.02 0.98 16 10 C 0.06 1.16 6.28 37.16 0.23 1.39 16 11 O -0.40 -9.56 9.85 -35.23 -0.35 -9.91 16 12 C 0.20 5.42 5.69 36.01 0.20 5.62 16 13 C -0.51 -15.13 9.43 -34.44 -0.32 -15.46 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 17 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.16 -1.77 5.11 -26.59 -0.14 -1.91 16 22 C 0.06 0.62 6.51 37.21 0.24 0.87 16 23 O -0.38 -4.41 10.60 -35.23 -0.37 -4.78 16 24 H 0.07 0.61 4.98 -51.93 -0.26 0.35 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.35 5.84 6.62 -39.29 -0.26 5.58 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.03 6.84 -51.93 -0.36 0.67 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.55 6.34 -51.93 -0.33 0.22 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -30.92 330.16 -8.23 -39.15 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.43 Total: 0.26 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.03 Total: -9.33 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.00 Total: -37.15 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.72 Total: -14.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.92 -8.23 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388863769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.253 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds