Wall clock time and date at job start Mon Mar 30 2020 04:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.48797 * 2 1 4 4 C 1.53086 * 109.48193 * 120.03540 * 2 1 3 5 5 C 1.53173 * 109.16461 * 177.59334 * 4 2 1 6 6 H 1.09002 * 109.54855 * 62.97091 * 5 4 2 7 7 C 1.52997 * 109.54662 * 183.15187 * 5 4 2 8 8 N 1.46901 * 109.47478 * 184.99695 * 7 5 4 9 9 C 1.46894 * 111.00307 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47322 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46715 * 64.99927 * 10 9 8 12 12 C 1.42908 * 113.99543 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46652 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00546 * 0.27680 * 13 12 11 15 15 C 1.37885 * 119.99721 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47093 * 60.00328 * 17 15 13 19 19 H 1.48495 * 109.47002 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47239 * 300.00048 * 17 15 13 21 21 C 1.53185 * 109.03497 * 303.01953 * 5 4 2 22 22 C 1.53090 * 109.16576 * 56.97701 * 21 5 4 23 23 O 1.42905 * 109.41694 * 302.39713 * 22 21 5 24 24 H 1.09001 * 109.46966 * 299.96934 * 1 2 3 25 25 H 1.09004 * 109.47572 * 59.96497 * 1 2 3 26 26 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.52459 * 57.68139 * 4 2 1 28 28 H 1.09003 * 109.57159 * 297.52516 * 4 2 1 29 29 H 1.09007 * 109.47348 * 64.99685 * 7 5 4 30 30 H 1.08997 * 109.47173 * 305.00021 * 7 5 4 31 31 H 1.00903 * 110.99817 * 56.04061 * 8 7 5 32 32 H 1.09003 * 109.47473 * 59.99927 * 9 8 7 33 33 H 1.09000 * 109.47103 * 300.00105 * 9 8 7 34 34 H 1.08995 * 109.47267 * 305.00099 * 10 9 8 35 35 H 1.08995 * 109.47083 * 184.99764 * 10 9 8 36 36 H 1.08992 * 109.47346 * 60.00168 * 12 11 10 37 37 H 1.08997 * 109.47015 * 299.99630 * 12 11 10 38 38 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.52223 * 176.88796 * 21 5 4 40 40 H 1.09000 * 109.51689 * 297.07385 * 21 5 4 41 41 H 1.08991 * 109.48219 * 182.41118 * 22 21 5 42 42 H 1.09005 * 109.47774 * 62.37373 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7224 1.2494 5 6 3.5711 -0.7709 1.2120 6 1 3.9690 0.2434 1.2423 7 6 4.0878 -1.5596 2.4169 8 7 5.5554 -1.5042 2.4457 9 6 6.0882 -2.2529 3.5917 10 6 7.6161 -2.1729 3.5875 11 8 8.0227 -0.8192 3.7982 12 6 9.4396 -0.6333 3.8115 13 6 9.7529 0.8229 4.0403 14 1 8.9505 1.5344 4.1677 15 6 11.0642 1.2458 4.0931 16 7 12.0414 0.3785 3.9433 17 14 11.4527 3.0510 4.3760 18 1 10.8842 3.4814 5.6786 19 1 12.9249 3.2442 4.3899 20 1 10.8577 3.8624 3.2839 21 6 4.0176 -1.4600 -0.0812 22 6 3.4306 -0.7092 -1.2793 23 8 2.0065 -0.6740 -1.1666 24 1 -0.3633 0.5134 0.8903 25 1 -0.3634 0.5144 -0.8897 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6443 -1.7376 1.2708 28 1 1.7149 -0.1854 2.1404 29 1 3.7649 -2.5977 2.3373 30 1 3.6897 -1.1247 3.3337 31 1 5.8811 -0.5492 2.4542 32 1 5.7792 -3.2958 3.5198 33 1 5.7041 -1.8232 4.5168 34 1 7.9955 -2.5208 2.6267 35 1 8.0150 -2.8003 4.3844 36 1 9.8564 -0.9491 2.8552 37 1 9.8767 -1.2289 4.6129 38 1 12.9639 0.6762 3.9801 39 1 5.1058 -1.4497 -0.1423 40 1 3.6613 -2.4901 -0.0867 41 1 3.7099 -1.2201 -2.2007 42 1 3.8192 0.3091 -1.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388863770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:03 Heat of formation + Delta-G solvation = -140.854892 kcal Electronic energy + Delta-G solvation = -19233.489756 eV Core-core repulsion = 16211.592812 eV Total energy + Delta-G solvation = -3021.896944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55243 -38.90327 -37.24433 -35.06200 -34.34245 -33.60689 -30.67753 -29.16710 -28.44380 -25.95942 -24.52617 -24.09974 -22.76083 -22.14963 -21.02587 -18.64648 -17.57961 -17.24208 -17.06697 -16.78517 -16.43391 -16.13573 -15.99412 -15.57314 -15.32059 -14.96750 -14.48390 -14.07518 -13.57127 -13.40034 -13.29625 -13.10361 -13.09493 -12.94751 -12.71527 -12.64968 -12.54356 -12.31114 -12.01605 -11.88430 -11.78024 -11.45376 -11.30636 -11.13267 -10.87675 -10.36290 -10.24161 -9.34669 -8.32914 -6.45710 1.39577 1.44317 1.52765 2.33873 2.87979 3.00932 3.14999 3.21701 3.72518 3.86563 3.94777 4.05173 4.19038 4.27892 4.35470 4.36019 4.46729 4.53276 4.59354 4.65738 4.69847 4.78591 4.80955 4.83788 4.85817 4.89436 4.94953 4.98018 5.11070 5.15434 5.17296 5.30718 5.33707 5.44323 5.53372 5.94554 6.09794 6.33747 6.38884 6.51991 6.80120 7.26255 8.79269 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.003409 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.653060 B = 8212.208539 C = 8712.009758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.055 0.945 4 C -0.137 4.137 5 C -0.086 4.086 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.694 5.694 9 C 0.076 3.924 10 C 0.054 3.946 11 O -0.408 6.408 12 C 0.212 3.788 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.265 1.265 21 C -0.135 4.135 22 C 0.059 3.941 23 O -0.400 6.400 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.342 0.658 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.047 0.953 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 -2.999 -6.390 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.073 0.927 4 C -0.175 4.175 5 C -0.105 4.105 6 H 0.080 0.920 7 C -0.060 4.060 8 N -0.326 5.326 9 C -0.053 4.053 10 C -0.023 4.023 11 O -0.328 6.328 12 C 0.137 3.863 13 C -0.587 4.587 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.173 4.173 22 C -0.018 4.018 23 O -0.320 6.320 24 H 0.105 0.895 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.160 0.840 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.340 -3.494 -6.934 22.708 hybrid contribution 0.967 0.978 1.031 1.719 sum -20.372 -2.516 -5.904 21.359 Atomic orbital electron populations 1.21773 0.91866 1.03058 1.03162 1.22232 0.95983 0.94835 0.84768 0.92681 1.22197 0.94371 1.02200 0.98724 1.21175 0.95472 0.99066 0.94775 0.91959 1.21987 0.86788 1.00734 0.96462 1.60488 1.09017 1.19707 1.43358 1.21890 0.91540 0.99883 0.91995 1.22606 0.95950 0.84392 0.99342 1.87749 1.24689 1.26943 1.93469 1.19780 0.76727 0.96383 0.93435 1.21366 0.92870 0.93612 1.50833 0.91880 1.25987 0.95280 1.03905 0.94141 1.70067 1.00149 1.36798 1.50021 0.85223 0.77284 0.77491 0.79347 1.18975 1.20056 1.18934 1.22049 1.01459 0.99700 0.94095 1.22665 0.80292 0.99826 0.98999 1.87884 1.21822 1.78345 1.43903 0.89489 0.91958 0.91928 0.90819 0.89854 0.90414 0.95069 0.84004 0.87895 0.94942 0.93900 0.93441 0.99771 0.99805 0.92023 0.90862 0.91553 0.88067 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 71.98 0.69 -1.25 16 2 C 0.08 1.41 3.26 30.62 0.10 1.51 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.14 -2.32 4.70 30.68 0.14 -2.18 16 5 C -0.09 -1.76 2.42 -10.67 -0.03 -1.79 16 6 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 7 C 0.07 1.53 5.08 86.30 0.44 1.96 16 8 N -0.69 -19.68 6.04 -513.89 -3.11 -22.78 16 9 C 0.08 2.20 6.11 86.30 0.53 2.73 16 10 C 0.05 2.03 6.28 71.98 0.45 2.48 16 11 O -0.41 -19.81 9.85 -148.98 -1.47 -21.28 16 12 C 0.21 12.01 5.69 71.23 0.41 12.42 16 13 C -0.55 -32.79 9.43 25.60 0.24 -32.55 16 14 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 17 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 C -0.14 -2.87 5.27 30.69 0.16 -2.71 16 22 C 0.06 1.18 6.84 72.01 0.49 1.67 16 23 O -0.40 -8.78 10.41 -148.98 -1.55 -10.33 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.34 11.15 8.29 -89.69 -0.74 10.41 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -65.59 339.39 0.49 -65.10 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.22 Total: 15.96 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.09 Total: -16.93 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.82 Total: -78.84 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -3.02 Total: -31.61 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.59 0.49 -65.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388863770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.756 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds