Wall clock time and date at job start Mon Mar 30 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47927 * 2 1 4 4 C 1.53098 * 109.47892 * 239.98133 * 2 1 3 5 5 C 1.53177 * 109.21356 * 182.36258 * 4 2 1 6 6 H 1.09002 * 109.54680 * 297.14715 * 5 4 2 7 7 C 1.52996 * 109.54399 * 176.87607 * 5 4 2 8 8 N 1.46904 * 109.47410 * 175.00262 * 7 5 4 9 9 C 1.46905 * 111.00045 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46864 * 179.97438 * 9 8 7 11 11 O 1.42906 * 109.46736 * 64.99865 * 10 9 8 12 12 C 1.42902 * 113.99553 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46906 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00160 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99755 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00366 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99633 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47409 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46993 * 119.99971 * 17 15 13 20 20 H 1.48497 * 109.46826 * 239.99534 * 17 15 13 21 21 C 1.53311 * 108.96735 * 56.95427 * 5 4 2 22 22 C 1.53100 * 109.19441 * 303.05955 * 21 5 4 23 23 O 1.42899 * 109.49071 * 120.03427 * 2 1 3 24 24 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47035 * 300.01652 * 1 2 3 26 26 H 1.09002 * 109.47005 * 60.02236 * 1 2 3 27 27 H 1.09002 * 109.52244 * 302.30197 * 4 2 1 28 28 H 1.09004 * 109.52508 * 62.42726 * 4 2 1 29 29 H 1.08999 * 109.47734 * 295.00396 * 7 5 4 30 30 H 1.09002 * 109.47212 * 55.00632 * 7 5 4 31 31 H 1.00900 * 110.99606 * 303.95207 * 8 7 5 32 32 H 1.09001 * 109.46973 * 299.99802 * 9 8 7 33 33 H 1.08995 * 109.47250 * 59.99996 * 9 8 7 34 34 H 1.08996 * 109.46783 * 184.99555 * 10 9 8 35 35 H 1.08998 * 109.47233 * 305.00000 * 10 9 8 36 36 H 1.08995 * 109.47495 * 300.00173 * 12 11 10 37 37 H 1.08996 * 109.47168 * 60.00335 * 12 11 10 38 38 H 0.96994 * 120.00204 * 180.02562 * 16 15 13 39 39 H 1.08992 * 109.51110 * 183.14032 * 21 5 4 40 40 H 1.08999 * 109.55790 * 62.99958 * 21 5 4 41 41 H 1.09002 * 109.47233 * 297.62202 * 22 21 5 42 42 H 1.08999 * 109.48998 * 177.59482 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7704 -1.2141 6 1 3.9688 0.2441 -1.2427 7 6 4.0865 -1.5583 -2.4201 8 7 5.5542 -1.5026 -2.4505 9 6 6.0857 -2.2496 -3.5984 10 6 7.6136 -2.1682 -3.5965 11 8 8.1247 -2.8361 -2.4412 12 6 9.5502 -2.8189 -2.3430 13 6 9.9767 -3.5479 -1.0949 14 1 9.2334 -3.9807 -0.4417 15 6 11.3157 -3.6614 -0.7864 16 7 12.2208 -3.1340 -1.5815 17 14 11.8443 -4.5657 0.7604 18 1 10.6431 -5.0629 1.4781 19 1 12.7112 -5.7134 0.3910 20 1 12.5988 -3.6391 1.6420 21 6 4.0179 -1.4596 0.0803 22 6 3.4310 -0.7091 1.2787 23 8 2.0068 -0.6743 1.1662 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.6444 -1.7374 -1.2712 28 1 1.7137 -0.1847 -2.1400 29 1 3.7640 -2.5964 -2.3408 30 1 3.6874 -1.1228 -3.3362 31 1 5.8797 -0.5475 -2.4590 32 1 5.7770 -3.2926 -3.5275 33 1 5.7004 -1.8186 -4.5223 34 1 8.0039 -2.6462 -4.4949 35 1 7.9217 -1.1229 -3.5779 36 1 9.9805 -3.3106 -3.2155 37 1 9.8989 -1.7872 -2.2987 38 1 13.1627 -3.2142 -1.3646 39 1 5.1061 -1.4492 0.1414 40 1 3.6627 -2.4901 0.0864 41 1 3.8194 0.3092 1.2954 42 1 3.7104 -1.2200 2.2002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388863772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:06 Heat of formation + Delta-G solvation = -116.253780 kcal Electronic energy + Delta-G solvation = -19302.192837 eV Core-core repulsion = 16281.362678 eV Total energy + Delta-G solvation = -3020.830160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68565 -37.24882 -35.94590 -33.55377 -32.85756 -32.51696 -29.25898 -27.92870 -26.76173 -24.90510 -23.20289 -22.27329 -21.52501 -21.33679 -20.11662 -16.47991 -16.38344 -16.07851 -15.74526 -15.51132 -15.07516 -14.75349 -14.63260 -14.32532 -14.02206 -13.38689 -13.24859 -12.74410 -12.62988 -12.52595 -12.17728 -12.00418 -11.88645 -11.65944 -11.22069 -11.19622 -10.90713 -10.78185 -10.73902 -10.64078 -10.41447 -10.27503 -9.95873 -9.48128 -9.03588 -8.77475 -8.17767 -8.09522 -6.07070 -4.07867 3.32003 3.38351 3.45615 3.67788 4.16172 4.38846 4.59615 4.72472 4.76679 4.85790 4.94217 5.05985 5.20253 5.29331 5.29550 5.35938 5.40472 5.48064 5.51186 5.58299 5.60102 5.68720 5.74102 5.85464 5.89226 5.91210 6.02511 6.06453 6.10386 6.27807 6.33939 6.41390 7.13746 7.17642 7.20388 7.47639 7.56334 7.85324 8.21161 8.65976 9.07389 9.57010 11.04725 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.003680 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.114208 B = 7607.191761 C = 8551.446898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.054 0.946 4 C -0.144 4.144 5 C -0.086 4.086 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.674 5.674 9 C 0.066 3.934 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.143 4.143 22 C 0.060 3.940 23 O -0.384 6.384 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.338 0.662 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.862 7.452 -0.983 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.072 0.928 4 C -0.182 4.182 5 C -0.105 4.105 6 H 0.086 0.914 7 C -0.063 4.063 8 N -0.305 5.305 9 C -0.063 4.063 10 C -0.013 4.013 11 O -0.299 6.299 12 C 0.119 3.881 13 C -0.547 4.547 14 H 0.086 0.914 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.180 4.180 22 C -0.017 4.017 23 O -0.304 6.304 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.826 6.762 -0.292 21.898 hybrid contribution 0.705 0.439 -0.529 0.985 sum -20.121 7.201 -0.822 21.386 Atomic orbital electron populations 1.21766 0.93388 1.02866 1.02176 1.22030 0.94744 0.94906 0.85407 0.92758 1.22257 0.95853 1.01974 0.98147 1.21204 0.94231 0.99455 0.95562 0.91370 1.21971 0.88362 1.00424 0.95541 1.60301 1.07180 1.18570 1.44490 1.21970 0.94535 0.99440 0.90393 1.22227 0.92465 0.96126 0.90486 1.87958 1.24582 1.75943 1.41456 1.20186 0.75080 0.95903 0.96958 1.21109 0.91892 1.34605 1.07130 0.91445 1.24956 0.96175 0.95979 0.97533 1.69973 1.01057 1.45454 1.37563 0.86295 0.78608 0.79249 0.82445 1.19426 1.20915 1.20887 1.22167 1.02920 0.99737 0.93203 1.22651 0.80290 0.99637 0.99105 1.87905 1.21692 1.77971 1.42809 0.91835 0.91986 0.91294 0.90941 0.91295 0.91020 0.95902 0.84463 0.90448 0.95015 0.94252 0.94847 0.98034 0.97927 0.92801 0.88932 0.91292 0.93465 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.57 37.16 0.36 -0.77 16 2 C 0.09 0.84 3.26 -26.68 -0.09 0.75 16 3 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.14 -1.34 4.70 -26.59 -0.12 -1.46 16 5 C -0.09 -0.92 2.42 -90.37 -0.22 -1.14 16 6 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 7 C 0.07 0.77 5.08 -3.82 -0.02 0.76 16 8 N -0.67 -9.70 6.00 -113.77 -0.68 -10.38 16 9 C 0.07 0.98 6.07 -3.82 -0.02 0.96 16 10 C 0.07 1.21 6.22 37.16 0.23 1.44 16 11 O -0.38 -9.35 10.27 -35.23 -0.36 -9.71 16 12 C 0.19 5.40 5.69 36.01 0.20 5.61 16 13 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 17 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.14 -1.74 5.28 -26.52 -0.14 -1.88 16 22 C 0.06 0.67 6.84 37.21 0.25 0.93 16 23 O -0.38 -4.62 10.41 -35.23 -0.37 -4.99 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.34 4.57 8.73 -39.29 -0.34 4.22 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 1.31 7.88 -51.93 -0.41 0.90 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -32.06 340.14 -8.47 -40.53 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.91 Total: -2.21 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.01 Total: -8.92 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.05 Total: -36.98 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.73 Total: -14.70 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.06 -8.47 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388863772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.725 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds