Wall clock time and date at job start Mon Mar 30 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46899 * 110.99846 * 275.00091 * 12 2 1 14 14 C 1.53003 * 109.46947 * 180.02562 * 13 12 2 15 15 C 1.53007 * 109.47092 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.46861 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.46861 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.62814 * 180.31155 * 17 16 15 19 19 O 1.43747 * 109.63131 * 60.07005 * 17 16 15 20 20 C 1.44785 * 104.81361 * 215.80891 * 19 17 16 21 21 C 1.54921 * 101.72388 * 36.10049 * 20 19 17 22 22 O 1.43373 * 109.63037 * 300.70131 * 17 16 15 23 23 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 24 24 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00894 * 110.99952 * 38.95386 * 12 2 1 28 28 H 1.08998 * 109.47462 * 299.99625 * 13 12 2 29 29 H 1.08996 * 109.47253 * 59.99840 * 13 12 2 30 30 H 1.09001 * 109.47174 * 299.99920 * 14 13 12 31 31 H 1.08996 * 109.47322 * 59.99825 * 14 13 12 32 32 H 1.09001 * 109.46982 * 299.99960 * 15 14 13 33 33 H 1.09002 * 109.46925 * 60.00021 * 15 14 13 34 34 H 1.09001 * 109.47556 * 299.99935 * 16 15 14 35 35 H 1.09002 * 109.47067 * 60.00435 * 16 15 14 36 36 H 1.09003 * 109.47583 * 59.99569 * 18 17 16 37 37 H 1.08997 * 109.47641 * 180.02562 * 18 17 16 38 38 H 1.09007 * 109.47069 * 300.00050 * 18 17 16 39 39 H 1.09004 * 110.97791 * 277.99282 * 20 19 17 40 40 H 1.09000 * 111.01293 * 154.22135 * 20 19 17 41 41 H 1.09001 * 110.69523 * 206.04207 * 21 20 19 42 42 H 1.08998 * 110.69325 * 82.83744 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 2.6609 0.4202 4.7695 16 6 3.1741 -0.3354 5.9969 17 6 3.2394 0.6177 7.1920 18 6 3.7596 -0.1324 8.4198 19 8 1.9279 1.1378 7.4672 20 6 2.1531 2.5028 7.8943 21 6 3.3409 2.9228 6.9929 22 8 4.1157 1.7112 6.8887 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9028 -0.5285 -4.4375 27 1 1.4496 -1.4979 1.4101 28 1 2.7588 1.0462 2.1183 29 1 1.0871 0.6164 2.5525 30 1 1.9201 -1.3566 3.8031 31 1 3.5916 -0.9262 3.3684 32 1 3.3367 1.2443 4.5409 33 1 1.6652 0.8132 4.9752 34 1 2.4979 -1.1593 6.2253 35 1 4.1697 -0.7287 5.7914 36 1 4.7564 -0.5218 8.2125 37 1 3.8047 0.5486 9.2697 38 1 3.0879 -0.9588 8.6523 39 1 2.4301 2.5414 8.9479 40 1 1.2777 3.1226 7.7001 41 1 3.9234 3.7130 7.4666 42 1 2.9868 3.2392 6.0117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390295948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:04 Heat of formation + Delta-G solvation = -100.625668 kcal Electronic energy + Delta-G solvation = -19565.688693 eV Core-core repulsion = 16545.536218 eV Total energy + Delta-G solvation = -3020.152474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85804 -36.79373 -35.22597 -34.88586 -32.81233 -31.72015 -29.64903 -28.76661 -26.86629 -25.03145 -23.52682 -22.99096 -20.99232 -20.86492 -20.04059 -17.60378 -16.76858 -16.54707 -16.01687 -15.37651 -14.92530 -14.81146 -14.19237 -14.06121 -13.88822 -13.38200 -13.15682 -12.95993 -12.71617 -12.55428 -12.46592 -12.14258 -12.03764 -11.93480 -11.57669 -11.33169 -11.10659 -10.89828 -10.82070 -10.45094 -10.31495 -10.27734 -10.07597 -9.74820 -9.41697 -9.09033 -8.52420 -7.34065 -6.00307 -3.97127 3.13698 3.28357 3.38386 3.41051 3.70363 4.27511 4.42339 4.44299 4.53377 4.71924 4.85454 5.01920 5.09311 5.12738 5.25439 5.30090 5.32966 5.35841 5.44593 5.57011 5.61236 5.73445 5.76809 5.91049 5.95860 6.02042 6.15995 6.22066 6.28044 6.33669 6.53906 6.58323 6.60986 6.82483 6.88310 7.17336 7.77129 7.99120 8.41693 8.75740 9.11397 9.62785 11.13431 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.038877 B = 0.003467 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.055604 B = 8075.286277 C = 8358.395271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.182 3.818 3 H 0.032 0.968 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.297 1.297 12 N -0.674 5.674 13 C 0.058 3.942 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.120 4.120 17 C 0.253 3.747 18 C -0.171 4.171 19 O -0.369 6.369 20 C 0.015 3.985 21 C 0.020 3.980 22 O -0.375 6.375 23 H 0.025 0.975 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.263 0.737 27 H 0.329 0.671 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 6.227 25.280 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.072 3.928 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.224 1.224 12 N -0.303 5.303 13 C -0.072 4.072 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.157 4.157 17 C 0.176 3.824 18 C -0.228 4.228 19 O -0.289 6.289 20 C -0.062 4.062 21 C -0.056 4.056 22 O -0.296 6.296 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.998 6.166 24.834 25.608 hybrid contribution -1.703 1.123 0.071 2.042 sum -0.705 7.289 24.906 25.960 Atomic orbital electron populations 1.22847 1.01606 1.00830 0.98769 1.19643 0.88492 0.95087 0.89540 0.94979 1.21023 1.31030 1.13692 0.87811 0.90057 1.24954 0.96045 0.96640 0.95890 1.69891 1.46058 1.40409 0.97799 0.86879 0.80550 0.83992 0.76796 1.20817 1.19542 1.22445 1.60606 1.57829 1.08906 1.02965 1.21941 0.98190 0.96114 0.90930 1.21560 1.02121 0.97959 0.93617 1.21456 1.01347 0.98694 0.93629 1.21929 1.02911 0.97512 0.93365 1.23479 0.76648 0.87881 0.94372 1.22370 1.02517 1.00931 0.97006 1.89279 1.27079 1.25917 1.86641 1.24347 0.99488 0.83575 0.98752 1.24186 0.92492 0.88512 1.00452 1.88904 1.34693 1.14691 1.91360 0.95554 0.93731 0.92758 0.92748 0.85370 0.91829 0.96638 0.92522 0.91190 0.91721 0.91905 0.90281 0.89896 0.90620 0.92094 0.90597 0.90938 0.87478 0.88489 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.04 8.64 37.16 0.32 -3.72 16 2 C 0.18 4.43 2.16 -68.86 -0.15 4.28 16 3 H 0.03 0.82 6.86 -51.93 -0.36 0.46 16 4 C -0.50 -14.43 9.42 -34.44 -0.32 -14.76 16 5 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.89 22.43 24.37 -169.99 -4.14 18.29 16 9 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 10 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 N -0.67 -14.23 6.23 -107.95 -0.67 -14.90 16 13 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 14 C -0.11 -1.64 5.48 -26.73 -0.15 -1.78 16 15 C -0.11 -1.41 4.92 -26.73 -0.13 -1.55 16 16 C -0.12 -1.31 4.72 -26.73 -0.13 -1.43 16 17 C 0.25 2.66 1.06 -26.73 -0.03 2.63 16 18 C -0.17 -1.46 9.19 37.16 0.34 -1.11 16 19 O -0.37 -4.01 10.34 -59.04 -0.61 -4.62 16 20 C 0.01 0.11 7.91 38.17 0.30 0.42 16 21 C 0.02 0.17 8.07 38.17 0.31 0.47 16 22 O -0.38 -4.19 10.17 -59.04 -0.60 -4.79 16 23 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 24 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 25 H 0.05 1.17 8.13 -51.93 -0.42 0.74 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.33 6.53 8.47 -39.29 -0.33 6.20 16 28 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 29 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.85 7.67 -51.93 -0.40 0.45 16 33 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -32.27 329.06 -7.57 -39.84 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.52 Total: 2.39 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 0.25 Total: -13.72 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.10 Total: -42.35 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.21 Total: -9.41 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.27 -7.57 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390295948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds