Wall clock time and date at job start Mon Mar 30 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47665 * 2 1 4 4 C 1.50702 * 109.47248 * 120.00732 * 2 1 3 5 5 H 1.07996 * 120.00286 * 116.67243 * 4 2 1 6 6 C 1.37882 * 119.99605 * 296.67683 * 4 2 1 7 7 N 1.31510 * 119.99983 * 352.39286 * 6 4 2 8 8 Si 1.86801 * 119.99794 * 172.67966 * 6 4 2 9 9 H 1.48501 * 109.46865 * 264.79000 * 8 6 4 10 10 H 1.48494 * 109.47181 * 24.78760 * 8 6 4 11 11 H 1.48494 * 109.47146 * 144.79188 * 8 6 4 12 12 N 1.46900 * 109.47007 * 240.00279 * 2 1 3 13 13 C 1.46903 * 111.00093 * 84.99710 * 12 2 1 14 14 C 1.52996 * 109.47201 * 180.02562 * 13 12 2 15 15 C 1.53006 * 109.47228 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47027 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46524 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.62392 * 180.30594 * 17 16 15 19 19 O 1.43752 * 109.63595 * 60.06712 * 17 16 15 20 20 C 1.44780 * 104.81650 * 215.80679 * 19 17 16 21 21 C 1.54915 * 101.72191 * 36.09927 * 20 19 17 22 22 O 1.43372 * 109.63142 * 300.69654 * 17 16 15 23 23 H 1.08992 * 109.47550 * 177.66107 * 1 2 3 24 24 H 1.09003 * 109.46886 * 297.65739 * 1 2 3 25 25 H 1.08998 * 109.47467 * 57.65312 * 1 2 3 26 26 H 0.97007 * 119.99993 * 180.27562 * 7 6 4 27 27 H 1.00903 * 110.99877 * 321.04986 * 12 2 1 28 28 H 1.08998 * 109.47502 * 300.00549 * 13 12 2 29 29 H 1.09003 * 109.46498 * 60.00243 * 13 12 2 30 30 H 1.08998 * 109.47338 * 300.00645 * 14 13 12 31 31 H 1.09003 * 109.47199 * 60.00668 * 14 13 12 32 32 H 1.09000 * 109.46356 * 300.00298 * 15 14 13 33 33 H 1.08993 * 109.46792 * 59.99877 * 15 14 13 34 34 H 1.09003 * 109.47045 * 299.99441 * 16 15 14 35 35 H 1.09003 * 109.47572 * 60.00079 * 16 15 14 36 36 H 1.09004 * 109.47107 * 60.00409 * 18 17 16 37 37 H 1.09002 * 109.46885 * 180.02562 * 18 17 16 38 38 H 1.08993 * 109.47296 * 299.99839 * 18 17 16 39 39 H 1.08999 * 110.97803 * 277.99646 * 20 19 17 40 40 H 1.08996 * 111.01417 * 154.21813 * 20 19 17 41 41 H 1.09003 * 110.69500 * 206.04396 * 21 20 19 42 42 H 1.08999 * 110.69669 * 82.84104 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6082 -1.6189 1.1321 6 6 1.7567 -0.2010 2.4816 7 7 1.1874 0.9786 2.6003 8 14 2.1991 -1.1826 4.0081 9 1 1.0157 -1.9589 4.4575 10 1 3.3114 -2.1143 3.6923 11 1 2.6218 -0.2549 5.0878 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6608 0.4203 -4.7695 16 6 3.1727 -0.3356 -5.9973 17 6 3.2380 0.6176 -7.1923 18 6 3.7424 -0.1367 -8.4243 19 8 4.1314 1.7039 -6.8954 20 6 3.5362 2.8582 -7.5353 21 6 2.0247 2.5850 -7.3342 22 8 1.9334 1.1510 -7.4548 23 1 -0.3634 -1.0267 -0.0419 24 1 -0.3633 0.4770 0.9103 25 1 -0.3634 0.5498 -0.8682 26 1 0.9971 1.3389 3.4807 27 1 1.4494 -1.4978 -1.4101 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0462 -2.1182 30 1 3.5901 -0.9272 -3.3692 31 1 1.9181 -1.3563 -3.8031 32 1 1.6656 0.8147 -4.9748 33 1 3.3377 1.2433 -4.5407 34 1 4.1679 -0.7303 -5.7921 35 1 2.4954 -1.1585 -6.2259 36 1 3.0615 -0.9568 -8.6522 37 1 3.7884 0.5447 -9.2738 38 1 4.7370 -0.5351 -8.2244 39 1 3.7892 2.8907 -8.5950 40 1 3.8359 3.7797 -7.0362 41 1 1.4379 3.0750 -8.1113 42 1 1.7028 2.9097 -6.3447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390296093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:06 Heat of formation + Delta-G solvation = -130.794925 kcal Electronic energy + Delta-G solvation = -19491.273186 eV Core-core repulsion = 16469.812475 eV Total energy + Delta-G solvation = -3021.460711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56874 -38.24056 -36.12736 -35.95221 -34.43353 -32.91179 -30.63331 -29.40612 -27.91901 -27.19880 -24.20545 -24.10409 -22.23926 -21.97155 -21.68693 -18.41295 -18.24065 -17.38486 -16.83994 -16.74468 -16.45609 -15.82701 -15.45363 -15.21286 -14.78856 -14.61979 -14.28508 -13.84902 -13.76048 -13.70630 -13.34446 -13.16440 -13.11872 -12.99622 -12.80301 -12.64097 -12.31489 -12.28693 -12.22781 -12.04877 -11.95265 -11.62958 -11.43658 -11.07882 -11.04854 -10.49931 -10.46296 -8.97829 -8.12008 -6.20821 1.43126 1.43349 1.55423 2.44496 2.49089 3.00677 3.17439 3.47206 3.69755 3.87700 3.89303 4.05690 4.08067 4.25635 4.31042 4.42400 4.51493 4.54902 4.66844 4.67804 4.73784 4.76575 4.79024 4.85212 4.91056 4.95163 5.00324 5.01576 5.06528 5.15779 5.20846 5.35817 5.41983 5.48680 5.64642 5.76702 6.18142 6.23213 6.65765 6.85518 6.94637 7.48241 8.95977 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.042667 B = 0.003219 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.091825 B = 8697.014173 C = 8876.934389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.284 1.284 12 N -0.690 5.690 13 C 0.064 3.936 14 C -0.102 4.102 15 C -0.102 4.102 16 C -0.119 4.119 17 C 0.248 3.752 18 C -0.167 4.167 19 O -0.391 6.391 20 C 0.012 3.988 21 C 0.014 3.986 22 O -0.395 6.395 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.015 0.985 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 1.504 -23.468 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.193 1.193 11 H -0.210 1.210 12 N -0.319 5.319 13 C -0.066 4.066 14 C -0.139 4.139 15 C -0.140 4.140 16 C -0.157 4.157 17 C 0.171 3.829 18 C -0.224 4.224 19 O -0.312 6.312 20 C -0.064 4.064 21 C -0.062 4.062 22 O -0.317 6.317 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.484 1.574 -23.099 23.413 hybrid contribution -0.913 0.190 0.861 1.269 sum 2.572 1.764 -22.238 22.455 Atomic orbital electron populations 1.22179 0.99993 0.99225 0.99610 1.18964 0.89966 0.92873 0.87877 0.98171 1.21469 1.33220 1.09845 0.91116 0.92624 1.25764 0.95482 0.95747 1.02032 1.70078 1.44683 1.17562 1.24184 0.85491 0.78560 0.78506 0.78755 1.19971 1.19335 1.21001 1.60679 1.57827 1.09742 1.03694 1.21910 0.97949 0.95612 0.91108 1.21453 1.01674 0.98122 0.92690 1.21313 1.00884 0.98153 0.93684 1.21934 1.03057 0.97747 0.92956 1.23569 0.76547 0.87894 0.94878 1.22341 1.02624 1.01130 0.96315 1.89260 1.47356 1.19032 1.75541 1.24560 0.91347 0.90520 0.99936 1.24365 0.97551 0.80687 1.03602 1.88867 1.30281 1.20667 1.91851 0.94172 0.93280 0.95478 0.92974 0.85074 0.96693 0.93583 0.91716 0.91486 0.92502 0.92653 0.89784 0.89358 0.90120 0.91374 0.90023 0.89198 0.86034 0.86136 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 9.01 71.98 0.65 -6.76 16 2 C 0.21 11.21 2.46 44.17 0.11 11.32 16 3 H 0.00 0.02 7.79 -2.39 -0.02 0.00 16 4 C -0.52 -29.80 8.79 25.60 0.23 -29.57 16 5 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 6 C 0.01 0.45 5.21 84.66 0.44 0.89 16 7 N -0.93 -55.04 11.92 21.45 0.26 -54.78 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 N -0.69 -30.56 6.23 -495.45 -3.09 -33.65 16 13 C 0.06 2.40 5.48 86.30 0.47 2.87 16 14 C -0.10 -2.98 5.47 30.59 0.17 -2.81 16 15 C -0.10 -2.65 4.92 30.60 0.15 -2.49 16 16 C -0.12 -2.59 4.72 30.59 0.14 -2.45 16 17 C 0.25 5.10 1.06 30.60 0.03 5.13 16 18 C -0.17 -2.65 9.19 71.98 0.66 -1.99 16 19 O -0.39 -8.57 10.34 -126.22 -1.31 -9.87 16 20 C 0.01 0.18 7.91 72.64 0.57 0.75 16 21 C 0.01 0.22 8.07 72.64 0.59 0.81 16 22 O -0.39 -8.57 10.17 -126.22 -1.28 -9.85 16 23 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 24 H 0.05 2.66 6.59 -2.39 -0.02 2.65 16 25 H 0.03 1.18 7.51 -2.39 -0.02 1.16 16 26 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 27 H 0.33 13.59 8.45 -89.69 -0.76 12.83 16 28 H 0.01 0.56 7.48 -2.39 -0.02 0.54 16 29 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.52 7.67 -2.39 -0.02 1.50 16 33 H 0.05 1.54 7.69 -2.39 -0.02 1.53 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.80 336.86 1.03 -64.77 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.21 Total: 20.78 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 4.21 Total: -24.29 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.83 Total: -88.43 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -2.59 Total: -19.72 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.80 1.03 -64.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390296093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.028 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds