Wall clock time and date at job start Mon Mar 30 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.50698 * 109.47263 * 239.99308 * 2 1 3 5 5 H 1.07996 * 120.00022 * 240.00387 * 4 2 1 6 6 C 1.37881 * 119.99692 * 60.00267 * 4 2 1 7 7 N 1.31518 * 120.00161 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47229 * 90.00094 * 8 6 4 10 10 H 1.48504 * 109.47034 * 209.99834 * 8 6 4 11 11 H 1.48501 * 109.47636 * 329.99883 * 8 6 4 12 12 N 1.46901 * 109.46605 * 119.99651 * 2 1 3 13 13 C 1.46902 * 110.99844 * 274.99751 * 12 2 1 14 14 C 1.53000 * 109.47014 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.61779 * 54.25070 * 14 13 12 16 16 C 1.53002 * 109.47174 * 63.92192 * 15 14 13 17 17 O 1.42892 * 109.47734 * 185.44470 * 16 15 14 18 18 C 1.53181 * 109.54242 * 174.47452 * 14 13 12 19 19 C 1.53098 * 109.16126 * 176.84759 * 18 14 13 20 20 O 1.42905 * 109.42325 * 302.38667 * 19 18 14 21 21 C 1.42923 * 114.08823 * 61.15150 * 20 19 18 22 22 C 1.53088 * 109.42077 * 298.85269 * 21 20 19 23 23 H 1.09001 * 109.47036 * 300.00725 * 1 2 3 24 24 H 1.09000 * 109.46597 * 60.00448 * 1 2 3 25 25 H 1.09004 * 109.46852 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99680 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00743 * 38.95638 * 12 2 1 28 28 H 1.09000 * 109.47060 * 60.00556 * 13 12 2 29 29 H 1.09003 * 109.47344 * 300.00484 * 13 12 2 30 30 H 1.08999 * 109.47362 * 183.91984 * 15 14 13 31 31 H 1.09002 * 109.47391 * 303.92728 * 15 14 13 32 32 H 1.09000 * 109.47177 * 305.44629 * 16 15 14 33 33 H 1.09002 * 109.46871 * 65.43986 * 16 15 14 34 34 H 0.96705 * 114.00429 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.52197 * 56.94365 * 18 14 13 36 36 H 1.09001 * 109.57133 * 296.78231 * 18 14 13 37 37 H 1.08996 * 109.48095 * 62.37349 * 19 18 14 38 38 H 1.08994 * 109.47546 * 182.39744 * 19 18 14 39 39 H 1.08992 * 109.47647 * 178.86291 * 21 20 19 40 40 H 1.09006 * 109.48495 * 58.83867 * 21 20 19 41 41 H 1.09004 * 109.52397 * 297.70465 * 22 21 20 42 42 H 1.09001 * 109.52530 * 177.51643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6310 -1.7569 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2228 2.3469 14 6 2.5961 -0.5326 3.5743 15 6 3.9287 -1.2068 3.2420 16 6 4.9775 -0.1374 2.9301 17 8 6.1852 -0.7665 2.4972 18 6 2.7932 0.4483 4.7342 19 6 3.2314 -0.3274 5.9793 20 8 2.2512 -1.3197 6.2905 21 6 2.0583 -2.2921 5.2610 22 6 1.5731 -1.5954 3.9871 23 1 -0.3633 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7083 1.1605 -3.4845 27 1 1.4496 -1.4978 1.4102 28 1 1.0870 0.6165 2.5525 29 1 2.7588 1.0464 2.1182 30 1 4.2579 -1.8009 4.0945 31 1 3.8017 -1.8550 2.3748 32 1 4.6059 0.5169 2.1415 33 1 5.1750 0.4501 3.8267 34 1 6.8961 -0.1472 2.2820 35 1 1.8551 0.9645 4.9381 36 1 3.5600 1.1766 4.4702 37 1 4.1896 -0.8105 5.7881 38 1 3.3320 0.3601 6.8190 39 1 1.3139 -3.0199 5.5834 40 1 3.0012 -2.8011 5.0603 41 1 0.6104 -1.1203 4.1759 42 1 1.4677 -2.3293 3.1881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390656802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:54 Heat of formation + Delta-G solvation = -109.920574 kcal Electronic energy + Delta-G solvation = -20739.907103 eV Core-core repulsion = 17719.351571 eV Total energy + Delta-G solvation = -3020.555531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16906 -37.00667 -36.13525 -34.47041 -32.08618 -31.15751 -29.21587 -28.61251 -25.56696 -25.03586 -23.95085 -22.61248 -21.92507 -20.12852 -18.22282 -17.17820 -16.57775 -15.98715 -15.72297 -15.41967 -14.80821 -14.56046 -14.45317 -14.35836 -13.50112 -13.30721 -12.93482 -12.85759 -12.39269 -12.18778 -11.69096 -11.55303 -11.28299 -11.16354 -11.03954 -10.98058 -10.88371 -10.64657 -10.53233 -10.18670 -10.06648 -9.99508 -9.84472 -9.60204 -9.26253 -8.93809 -8.35231 -7.19502 -5.97446 -4.00391 3.33249 3.39647 3.44931 3.89335 4.37916 4.46180 4.75400 4.87599 4.91911 5.06048 5.21760 5.27880 5.34247 5.41291 5.47704 5.56502 5.62556 5.68559 5.72350 5.82717 5.90299 5.93492 6.07799 6.16575 6.18345 6.30179 6.46631 6.53418 6.69643 6.76103 6.84248 7.10756 7.20247 7.37401 7.74290 7.85950 7.90283 8.28734 8.54551 8.63280 9.07360 9.65100 11.09585 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.005532 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.793259 B = 5059.907546 C = 5596.179801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.031 0.969 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.070 3.930 14 C -0.052 4.052 15 C -0.101 4.101 16 C 0.078 3.922 17 O -0.575 6.575 18 C -0.150 4.150 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.060 3.940 22 C -0.145 4.145 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.259 0.741 27 H 0.323 0.677 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.373 0.627 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -1.271 14.839 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.309 5.309 13 C -0.060 4.060 14 C -0.053 4.053 15 C -0.139 4.139 16 C 0.001 3.999 17 O -0.380 6.380 18 C -0.188 4.188 19 C -0.016 4.016 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.183 4.183 23 H 0.023 0.977 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.219 0.781 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.457 -1.611 14.790 15.531 hybrid contribution -0.345 0.381 -1.106 1.219 sum 4.112 -1.230 13.684 14.342 Atomic orbital electron populations 1.22431 1.00844 0.99107 1.00404 1.19149 0.89470 0.94312 0.86634 0.95113 1.21164 1.30008 1.12345 0.89591 0.91954 1.24950 0.95390 0.95200 0.99038 1.69887 1.37462 1.23273 1.23266 0.86526 0.79280 0.79239 0.82513 1.20876 1.21435 1.19861 1.60845 1.57828 1.08927 1.03258 1.21940 0.98158 0.95590 0.90355 1.20572 0.95043 0.95137 0.94542 1.21463 0.91987 0.98101 1.02321 1.22290 0.84833 0.95456 0.97368 1.86466 1.24098 1.38087 1.89322 1.22307 1.02525 0.98576 0.95359 1.22568 0.91261 0.90483 0.97252 1.87891 1.60402 1.40558 1.41675 1.22631 1.00598 0.90600 0.87872 1.22225 0.98959 0.99049 0.98023 0.97733 0.89333 0.95422 0.93140 0.85942 0.96310 0.91741 0.92727 0.88876 0.92525 0.94899 0.78072 0.91138 0.90762 0.92999 0.89392 0.89237 0.92845 0.91241 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.94 37.16 0.33 -3.70 16 2 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 3 H 0.03 0.84 7.80 -51.93 -0.40 0.44 16 4 C -0.49 -13.54 8.84 -34.44 -0.30 -13.85 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -13.74 5.16 -107.95 -0.56 -14.29 16 13 C 0.07 1.18 4.05 -3.82 -0.02 1.17 16 14 C -0.05 -0.72 0.37 -154.32 -0.06 -0.77 16 15 C -0.10 -1.47 3.93 -26.73 -0.11 -1.57 16 16 C 0.08 1.10 6.28 37.16 0.23 1.33 16 17 O -0.58 -8.44 13.66 -35.23 -0.48 -8.92 16 18 C -0.15 -1.78 4.56 -26.59 -0.12 -1.90 16 19 C 0.06 0.68 6.57 37.21 0.24 0.93 16 20 O -0.39 -5.00 10.77 -35.23 -0.38 -5.38 16 21 C 0.06 0.70 6.57 37.20 0.24 0.95 16 22 C -0.14 -1.88 4.63 -26.59 -0.12 -2.00 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.32 6.28 6.85 -39.29 -0.27 6.02 16 28 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16 29 H 0.06 1.14 6.63 -51.93 -0.34 0.79 16 30 H 0.05 0.74 5.02 -51.93 -0.26 0.48 16 31 H 0.09 1.61 7.33 -51.93 -0.38 1.23 16 32 H 0.06 0.90 6.42 -51.93 -0.33 0.56 16 33 H 0.03 0.39 6.63 -51.93 -0.34 0.05 16 34 H 0.37 3.75 9.12 45.56 0.42 4.17 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.82 6.34 -51.93 -0.33 0.49 16 37 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.62 6.52 -51.93 -0.34 0.28 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.07 6.86 -51.93 -0.36 0.71 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -30.04 314.35 -7.06 -37.10 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.04 Total: 8.24 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 0.06 Total: -12.95 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.07 Total: -39.39 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.86 Total: -14.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.04 -7.06 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390656802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.819 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds