Wall clock time and date at job start Mon Mar 30 2020 05:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 N 1.46904 * 109.47367 * 239.99756 * 2 1 3 5 5 C 1.46902 * 110.99557 * 85.00104 * 4 2 1 6 6 C 1.52998 * 109.46748 * 180.02562 * 5 4 2 7 7 O 1.42906 * 109.47212 * 65.00172 * 6 5 4 8 8 C 1.42894 * 114.00137 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47263 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99758 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52998 * 109.47169 * 119.99777 * 2 1 3 18 18 H 1.09001 * 109.48321 * 300.02515 * 17 2 1 19 19 C 1.53089 * 109.48410 * 180.02562 * 17 2 1 20 20 C 1.53184 * 109.16549 * 182.41166 * 19 17 2 21 21 C 1.53177 * 109.03613 * 56.97830 * 20 19 17 22 22 C 1.53093 * 109.16404 * 303.01995 * 21 20 19 23 23 O 1.42903 * 109.47853 * 60.05818 * 17 2 1 24 24 H 1.09003 * 109.47014 * 300.00715 * 1 2 3 25 25 H 1.09007 * 109.46990 * 59.99847 * 1 2 3 26 26 H 1.08991 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.00898 * 110.99554 * 321.05027 * 4 2 1 28 28 H 1.08996 * 109.47044 * 60.00376 * 5 4 2 29 29 H 1.08994 * 109.47663 * 300.00026 * 5 4 2 30 30 H 1.09001 * 109.47860 * 305.00477 * 6 5 4 31 31 H 1.09006 * 109.47541 * 184.99917 * 6 5 4 32 32 H 1.09001 * 109.47678 * 60.00187 * 8 7 6 33 33 H 1.09006 * 109.47375 * 299.99854 * 8 7 6 34 34 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 35 35 H 1.09006 * 109.51997 * 302.31298 * 19 17 2 36 36 H 1.08995 * 109.52052 * 62.43935 * 19 17 2 37 37 H 1.08997 * 109.54015 * 176.84568 * 20 19 17 38 38 H 1.08996 * 109.54051 * 297.11380 * 20 19 17 39 39 H 1.09002 * 109.52292 * 62.92350 * 21 20 19 40 40 H 1.08996 * 109.52373 * 183.11546 * 21 20 19 41 41 H 1.09000 * 109.48271 * 177.59073 * 22 21 20 42 42 H 1.08998 * 109.48458 * 297.61886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5951 -0.5332 -3.5744 7 8 1.6493 -1.5387 -3.9440 8 6 2.0337 -2.3065 -5.0862 9 6 0.9696 -3.3312 -5.3841 10 1 0.0876 -3.3899 -4.7634 11 6 1.1213 -4.1930 -6.4495 12 7 2.1950 -4.1212 -7.2056 13 14 -0.1974 -5.4636 -6.8181 14 1 0.2014 -6.2606 -8.0060 15 1 -0.3580 -6.3641 -5.6483 16 1 -1.4843 -4.7757 -7.0937 17 6 2.0400 -0.7212 1.2493 18 1 1.6764 -0.2077 2.1394 19 6 3.5709 -0.7208 1.2499 20 6 4.0735 -1.4964 2.4715 21 6 3.4925 -2.9133 2.4375 22 6 1.9646 -2.8290 2.3911 23 8 1.5649 -2.0689 1.2488 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.4496 -1.4979 -1.4100 28 1 2.7589 1.0461 -2.1181 29 1 1.0872 0.6163 -2.5526 30 1 3.5507 -1.0022 -3.3396 31 1 2.7262 0.1641 -4.4019 32 1 2.9778 -2.8121 -4.8833 33 1 2.1528 -1.6457 -5.9450 34 1 2.8799 -3.4616 -7.0139 35 1 3.9356 -1.1980 0.3402 36 1 3.9348 0.3057 1.2938 37 1 5.1620 -1.5479 2.4481 38 1 3.7505 -0.9916 3.3820 39 1 3.8556 -3.4347 1.5518 40 1 3.8004 -3.4548 3.3319 41 1 1.5470 -3.8335 2.3235 42 1 1.5996 -2.3437 3.2962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395407576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:28 Heat of formation + Delta-G solvation = -118.746000 kcal Electronic energy + Delta-G solvation = -19884.881727 eV Core-core repulsion = 16863.943497 eV Total energy + Delta-G solvation = -3020.938231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.60924 -37.35587 -35.96080 -33.61988 -33.05661 -31.83491 -29.72594 -27.53054 -26.03211 -25.27099 -23.57485 -22.48786 -21.45566 -20.83175 -20.11942 -16.99040 -16.43609 -16.19784 -15.68590 -15.36074 -14.85192 -14.66892 -14.32661 -13.93178 -13.87162 -13.69906 -13.21854 -13.00243 -12.68709 -12.43189 -12.23529 -11.84115 -11.51927 -11.46050 -11.26652 -11.19611 -11.05406 -11.02465 -10.68219 -10.60791 -10.32410 -10.09253 -10.03116 -9.38231 -8.81755 -8.59624 -8.20651 -8.10110 -6.43202 -4.11419 3.45363 3.48351 3.66989 3.80670 4.35122 4.47585 4.60543 4.76162 4.83657 4.85773 4.97348 5.12073 5.19446 5.28375 5.34922 5.37713 5.41067 5.51712 5.56367 5.65579 5.67225 5.71741 5.81450 5.89575 5.92465 6.02537 6.03623 6.09071 6.17512 6.29910 6.33831 6.45515 6.80896 7.16951 7.20355 7.38893 7.75192 7.93034 8.21731 8.67158 8.84547 9.59142 10.97118 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.004308 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.263834 B = 6497.549391 C = 6897.621471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.083 0.917 4 N -0.674 5.674 5 C 0.065 3.935 6 C 0.060 3.940 7 O -0.389 6.389 8 C 0.189 3.811 9 C -0.595 4.595 10 H 0.060 0.940 11 C 0.017 3.983 12 N -0.912 5.912 13 Si 1.079 2.921 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.105 3.895 18 H 0.051 0.949 19 C -0.143 4.143 20 C -0.122 4.122 21 C -0.156 4.156 22 C 0.063 3.937 23 O -0.367 6.367 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.362 0.638 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.038 0.962 32 H -0.004 1.004 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 8.384 19.915 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.101 0.899 4 N -0.307 5.307 5 C -0.064 4.064 6 C -0.018 4.018 7 O -0.308 6.308 8 C 0.114 3.886 9 C -0.633 4.633 10 H 0.078 0.922 11 C -0.186 4.186 12 N -0.548 5.548 13 Si 0.906 3.094 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.213 1.213 17 C 0.046 3.954 18 H 0.068 0.932 19 C -0.181 4.181 20 C -0.160 4.160 21 C -0.194 4.194 22 C -0.014 4.014 23 O -0.286 6.286 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.183 0.817 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.613 7.120 18.972 20.328 hybrid contribution 0.040 1.609 0.965 1.876 sum 1.653 8.728 19.937 21.827 Atomic orbital electron populations 1.22432 0.96843 1.03133 1.01446 1.21568 0.93157 0.96773 0.90455 0.89911 1.60536 1.57723 1.09813 1.02602 1.21971 0.99637 0.94793 0.90039 1.22334 0.93397 0.91379 0.94647 1.87830 1.44701 1.48244 1.50065 1.20248 0.96203 0.89783 0.82357 1.21900 1.06731 1.18303 1.16379 0.92217 1.25921 1.00753 0.99366 0.92589 1.70800 1.08714 1.35951 1.39329 0.83411 0.74288 0.75393 0.76332 1.20656 1.21183 1.21276 1.22112 0.93385 0.83357 0.96500 0.93154 1.22098 0.95954 1.00509 0.99561 1.21597 1.00478 0.95693 0.98205 1.22177 0.96902 0.97585 1.02727 1.22501 0.93934 0.96374 0.88611 1.87994 1.74159 1.23163 1.43299 0.92771 0.92662 0.91273 0.81669 0.90844 0.94806 0.93643 0.94354 0.98662 0.98930 0.92327 0.89092 0.91834 0.91808 0.92566 0.90689 0.91484 0.89118 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.02 37.16 0.34 -1.87 16 2 C 0.09 1.12 2.42 -67.71 -0.16 0.96 16 3 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 4 N -0.67 -10.29 5.31 -106.73 -0.57 -10.86 16 5 C 0.06 0.99 5.90 -3.82 -0.02 0.97 16 6 C 0.06 1.15 6.28 37.16 0.23 1.38 16 7 O -0.39 -9.58 9.85 -35.23 -0.35 -9.93 16 8 C 0.19 5.28 5.00 36.01 0.18 5.46 16 9 C -0.59 -18.07 9.43 -34.44 -0.32 -18.39 16 10 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 11 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 12 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 13 Si 1.08 25.91 29.90 -169.99 -5.08 20.83 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.10 1.23 2.46 -26.69 -0.07 1.16 16 18 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.14 -1.59 5.29 -26.59 -0.14 -1.73 16 20 C -0.12 -1.17 6.03 -26.54 -0.16 -1.33 16 21 C -0.16 -1.55 6.14 -26.59 -0.16 -1.72 16 22 C 0.06 0.67 6.84 37.21 0.25 0.92 16 23 O -0.37 -4.97 9.60 -35.23 -0.34 -5.31 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.70 7.45 -51.92 -0.39 0.31 16 26 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 27 H 0.36 6.57 8.03 -39.29 -0.32 6.26 16 28 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 29 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.00 -0.12 8.01 -51.93 -0.42 -0.54 16 33 H -0.01 -0.20 8.01 -51.93 -0.42 -0.61 16 34 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 35 H 0.09 1.23 7.54 -51.93 -0.39 0.84 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -32.13 334.50 -8.36 -40.49 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.68 Total: 1.19 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.14 Total: -13.78 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.19 Total: -38.54 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.69 Total: -15.24 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.13 -8.36 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395407576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.258 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds