Wall clock time and date at job start Mon Mar 30 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 N 1.46904 * 109.47367 * 239.99756 * 2 1 3 5 5 C 1.46902 * 110.99557 * 85.00104 * 4 2 1 6 6 C 1.52998 * 109.46748 * 180.02562 * 5 4 2 7 7 O 1.42906 * 109.47212 * 65.00172 * 6 5 4 8 8 C 1.42894 * 114.00137 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47263 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99758 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52998 * 109.47169 * 119.99777 * 2 1 3 18 18 H 1.09001 * 109.48321 * 300.02515 * 17 2 1 19 19 C 1.53089 * 109.48410 * 180.02562 * 17 2 1 20 20 C 1.53184 * 109.16549 * 182.41166 * 19 17 2 21 21 C 1.53177 * 109.03613 * 56.97830 * 20 19 17 22 22 C 1.53093 * 109.16404 * 303.01995 * 21 20 19 23 23 O 1.42903 * 109.47853 * 60.05818 * 17 2 1 24 24 H 1.09003 * 109.47014 * 300.00715 * 1 2 3 25 25 H 1.09007 * 109.46990 * 59.99847 * 1 2 3 26 26 H 1.08991 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.00898 * 110.99554 * 321.05027 * 4 2 1 28 28 H 1.08996 * 109.47044 * 60.00376 * 5 4 2 29 29 H 1.08994 * 109.47663 * 300.00026 * 5 4 2 30 30 H 1.09001 * 109.47860 * 305.00477 * 6 5 4 31 31 H 1.09006 * 109.47541 * 184.99917 * 6 5 4 32 32 H 1.09001 * 109.47678 * 60.00187 * 8 7 6 33 33 H 1.09006 * 109.47375 * 299.99854 * 8 7 6 34 34 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 35 35 H 1.09006 * 109.51997 * 302.31298 * 19 17 2 36 36 H 1.08995 * 109.52052 * 62.43935 * 19 17 2 37 37 H 1.08997 * 109.54015 * 176.84568 * 20 19 17 38 38 H 1.08996 * 109.54051 * 297.11380 * 20 19 17 39 39 H 1.09002 * 109.52292 * 62.92350 * 21 20 19 40 40 H 1.08996 * 109.52373 * 183.11546 * 21 20 19 41 41 H 1.09000 * 109.48271 * 177.59073 * 22 21 20 42 42 H 1.08998 * 109.48458 * 297.61886 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5951 -0.5332 -3.5744 7 8 1.6493 -1.5387 -3.9440 8 6 2.0337 -2.3065 -5.0862 9 6 0.9696 -3.3312 -5.3841 10 1 0.0876 -3.3899 -4.7634 11 6 1.1213 -4.1930 -6.4495 12 7 2.1950 -4.1212 -7.2056 13 14 -0.1974 -5.4636 -6.8181 14 1 0.2014 -6.2606 -8.0060 15 1 -0.3580 -6.3641 -5.6483 16 1 -1.4843 -4.7757 -7.0937 17 6 2.0400 -0.7212 1.2493 18 1 1.6764 -0.2077 2.1394 19 6 3.5709 -0.7208 1.2499 20 6 4.0735 -1.4964 2.4715 21 6 3.4925 -2.9133 2.4375 22 6 1.9646 -2.8290 2.3911 23 8 1.5649 -2.0689 1.2488 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.4496 -1.4979 -1.4100 28 1 2.7589 1.0461 -2.1181 29 1 1.0872 0.6163 -2.5526 30 1 3.5507 -1.0022 -3.3396 31 1 2.7262 0.1641 -4.4019 32 1 2.9778 -2.8121 -4.8833 33 1 2.1528 -1.6457 -5.9450 34 1 2.8799 -3.4616 -7.0139 35 1 3.9356 -1.1980 0.3402 36 1 3.9348 0.3057 1.2938 37 1 5.1620 -1.5479 2.4481 38 1 3.7505 -0.9916 3.3820 39 1 3.8556 -3.4347 1.5518 40 1 3.8004 -3.4548 3.3319 41 1 1.5470 -3.8335 2.3235 42 1 1.5996 -2.3437 3.2962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395407576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:27 Heat of formation + Delta-G solvation = -140.642763 kcal Electronic energy + Delta-G solvation = -19885.831242 eV Core-core repulsion = 16863.943497 eV Total energy + Delta-G solvation = -3021.887746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52310 -39.01060 -37.31575 -35.24695 -34.46912 -33.07960 -30.74851 -29.21660 -27.84821 -26.16872 -24.76358 -24.44189 -22.85852 -21.77405 -20.97220 -19.21760 -17.57554 -17.44296 -17.17938 -16.73648 -16.12184 -15.69172 -15.56689 -15.38342 -15.28002 -15.00514 -14.56089 -14.36717 -14.03726 -13.69771 -13.50031 -13.17519 -13.04704 -12.74109 -12.67436 -12.48496 -12.28753 -12.14046 -11.95519 -11.90801 -11.85466 -11.42107 -11.06032 -10.86710 -10.84976 -10.36221 -10.25652 -9.26836 -8.84421 -6.55185 1.52074 1.61249 1.82448 2.49157 2.94828 3.02854 3.06709 3.20837 3.72965 3.96961 4.04726 4.08709 4.13114 4.23398 4.28480 4.36800 4.39242 4.45241 4.48416 4.51236 4.60698 4.72453 4.75745 4.77489 4.85695 4.89183 4.92734 4.98952 5.02737 5.13715 5.22038 5.24573 5.36032 5.56927 5.66370 5.91175 6.12509 6.32008 6.38537 6.49431 6.64911 7.25797 8.56729 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.004308 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.263834 B = 6497.549391 C = 6897.621471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 H 0.105 0.895 4 N -0.681 5.681 5 C 0.075 3.925 6 C 0.052 3.948 7 O -0.402 6.402 8 C 0.199 3.801 9 C -0.623 4.623 10 H 0.053 0.947 11 C -0.028 4.028 12 N -0.928 5.928 13 Si 1.128 2.872 14 H -0.275 1.275 15 H -0.268 1.268 16 H -0.267 1.267 17 C 0.103 3.897 18 H 0.072 0.928 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.155 4.155 22 C 0.057 3.943 23 O -0.398 6.398 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.342 0.658 28 H 0.108 0.892 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.049 0.951 32 H -0.021 1.021 33 H -0.018 1.018 34 H 0.255 0.745 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 9.104 21.565 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 H 0.123 0.877 4 N -0.312 5.312 5 C -0.054 4.054 6 C -0.025 4.025 7 O -0.322 6.322 8 C 0.124 3.876 9 C -0.661 4.661 10 H 0.071 0.929 11 C -0.226 4.226 12 N -0.564 5.564 13 Si 0.947 3.053 14 H -0.200 1.200 15 H -0.193 1.193 16 H -0.192 1.192 17 C 0.045 3.955 18 H 0.089 0.911 19 C -0.179 4.179 20 C -0.157 4.157 21 C -0.192 4.192 22 C -0.020 4.020 23 O -0.317 6.317 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.160 0.840 28 H 0.126 0.874 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.067 0.933 32 H -0.003 1.003 33 H -0.001 1.001 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.089 7.886 20.656 22.137 hybrid contribution 0.270 1.459 0.515 1.571 sum 1.359 9.345 21.171 23.182 Atomic orbital electron populations 1.22353 0.96830 1.01853 1.02174 1.21736 0.93194 0.97654 0.89458 0.87723 1.60575 1.57679 1.09468 1.03484 1.21959 1.00162 0.94820 0.88477 1.22675 0.92539 0.90464 0.96793 1.87792 1.46426 1.49330 1.48650 1.19917 0.94922 0.89604 0.83168 1.22259 1.07192 1.19610 1.17001 0.92906 1.27613 1.02023 1.01011 0.91921 1.70927 1.09320 1.36101 1.40085 0.82825 0.72197 0.73330 0.76979 1.19986 1.19309 1.19156 1.22209 0.93682 0.82837 0.96745 0.91061 1.22047 0.95613 1.01292 0.98912 1.21600 1.00763 0.95169 0.98196 1.22160 0.96482 0.98080 1.02528 1.22660 0.94397 0.96380 0.88536 1.87961 1.74743 1.24245 1.44774 0.90512 0.93380 0.93522 0.83989 0.87377 0.95003 0.94027 0.93314 1.00307 1.00064 0.93585 0.92167 0.90307 0.91294 0.90701 0.93128 0.89452 0.89182 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.02 71.98 0.65 -3.39 16 2 C 0.09 2.06 2.42 44.91 0.11 2.17 16 3 H 0.10 1.96 7.80 -2.39 -0.02 1.94 16 4 N -0.68 -20.59 5.31 -491.58 -2.61 -23.21 16 5 C 0.07 2.21 5.90 86.30 0.51 2.72 16 6 C 0.05 2.00 6.28 71.98 0.45 2.46 16 7 O -0.40 -20.31 9.85 -148.98 -1.47 -21.77 16 8 C 0.20 11.50 5.00 71.24 0.36 11.86 16 9 C -0.62 -38.55 9.43 25.60 0.24 -38.31 16 10 H 0.05 3.27 7.81 -2.91 -0.02 3.24 16 11 C -0.03 -1.69 5.46 84.65 0.46 -1.23 16 12 N -0.93 -58.55 13.65 21.45 0.29 -58.26 16 13 Si 1.13 51.46 29.90 68.60 2.05 53.51 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 C 0.10 2.23 2.46 30.62 0.08 2.31 16 18 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 19 C -0.14 -2.90 5.29 30.69 0.16 -2.74 16 20 C -0.12 -2.05 6.03 30.72 0.19 -1.86 16 21 C -0.15 -2.90 6.14 30.68 0.19 -2.72 16 22 C 0.06 1.15 6.84 72.01 0.49 1.64 16 23 O -0.40 -10.56 9.60 -148.98 -1.43 -11.99 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.17 7.45 -2.38 -0.02 1.15 16 26 H 0.05 1.29 7.67 -2.39 -0.02 1.27 16 27 H 0.34 12.74 8.03 -89.70 -0.72 12.02 16 28 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 29 H 0.03 0.96 7.44 -2.39 -0.02 0.94 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H -0.02 -1.24 8.01 -2.39 -0.02 -1.26 16 33 H -0.02 -1.07 8.01 -2.38 -0.02 -1.09 16 34 H 0.26 16.27 7.22 -92.71 -0.67 15.60 16 35 H 0.06 1.62 7.54 -2.38 -0.02 1.60 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.23 334.50 1.06 -69.17 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.35 Total: 19.64 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.88 Total: -27.09 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.32 Total: -81.46 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -2.90 Total: -33.76 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -70.23 1.06 -69.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395407576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.478 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds