Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.48043 * 2 1 4 4 C 1.53091 * 109.48383 * 120.03781 * 2 1 3 5 5 C 1.53188 * 109.16092 * 62.37249 * 4 2 1 6 6 C 1.53171 * 109.03426 * 56.98014 * 5 4 2 7 7 H 1.09003 * 109.57326 * 62.95732 * 6 5 4 8 8 N 1.46902 * 109.52131 * 183.10875 * 6 5 4 9 9 C 1.46908 * 110.99717 * 65.73484 * 8 6 5 10 10 C 1.46902 * 111.00386 * 189.68450 * 8 6 5 11 11 C 1.53002 * 109.46519 * 75.77811 * 10 8 6 12 12 O 1.42893 * 109.47177 * 65.05373 * 11 10 8 13 13 C 1.42904 * 114.00436 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47632 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99503 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00215 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99960 * 180.27462 * 16 14 13 19 19 H 1.48498 * 109.47277 * 179.72441 * 18 16 14 20 20 H 1.48501 * 109.47120 * 299.72428 * 18 16 14 21 21 H 1.48509 * 109.47152 * 59.72101 * 18 16 14 22 22 C 1.53085 * 109.16776 * 303.01835 * 6 5 4 23 23 O 1.42905 * 109.41760 * 57.60887 * 22 6 5 24 24 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46751 * 300.01620 * 1 2 3 26 26 H 1.08991 * 109.47309 * 60.01585 * 1 2 3 27 27 H 1.08996 * 109.52728 * 182.27746 * 4 2 1 28 28 H 1.09001 * 109.52075 * 302.40699 * 4 2 1 29 29 H 1.09000 * 109.54315 * 297.11536 * 5 4 2 30 30 H 1.09000 * 109.53988 * 176.85356 * 5 4 2 31 31 H 1.08994 * 109.47448 * 188.98641 * 9 8 6 32 32 H 1.09002 * 109.47081 * 308.98958 * 9 8 6 33 33 H 1.08998 * 109.46852 * 68.98302 * 9 8 6 34 34 H 1.09000 * 109.46733 * 315.78054 * 10 8 6 35 35 H 1.08993 * 109.47466 * 195.77838 * 10 8 6 36 36 H 1.09004 * 109.47353 * 305.05162 * 11 10 8 37 37 H 1.09003 * 109.46756 * 185.05144 * 11 10 8 38 38 H 1.08996 * 109.46739 * 59.99510 * 13 12 11 39 39 H 1.09002 * 109.47014 * 300.00185 * 13 12 11 40 40 H 0.97004 * 120.00196 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.48189 * 177.59309 * 22 6 5 42 42 H 1.09002 * 109.48179 * 297.62737 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 1.5757 -2.1816 1.2118 6 6 2.0764 -2.8322 -0.0814 7 1 3.1664 -2.8409 -0.0875 8 7 1.5741 -4.2102 -0.1640 9 6 0.1114 -4.2300 -0.2995 10 6 2.2147 -4.9389 -1.2670 11 6 3.6394 -5.3245 -0.8638 12 8 3.5925 -6.2509 0.2231 13 6 4.8779 -6.6780 0.6788 14 6 4.7098 -7.6478 1.8198 15 1 3.7202 -7.9114 2.1631 16 6 5.8191 -8.1978 2.4263 17 7 7.0240 -7.8765 2.0086 18 14 5.6105 -9.4059 3.8357 19 1 6.9461 -9.8533 4.3060 20 1 4.8887 -8.7442 4.9521 21 1 4.8307 -10.5806 3.3694 22 6 1.5645 -2.0283 -1.2794 23 8 2.0065 -0.6740 -1.1666 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5141 0.8899 26 1 -0.3633 0.5135 -0.8900 27 1 3.1298 -0.6877 1.2708 28 1 1.6431 -0.2354 2.1398 29 1 0.4867 -2.2182 1.2404 30 1 1.9825 -2.7161 2.0702 31 1 -0.2490 -5.2537 -0.1984 32 1 -0.3340 -3.6096 0.4783 33 1 -0.1681 -3.8413 -1.2787 34 1 2.2470 -4.3033 -2.1520 35 1 1.6430 -5.8402 -1.4876 36 1 4.1845 -4.4318 -0.5571 37 1 4.1450 -5.7853 -1.7124 38 1 5.4490 -5.8135 1.0173 39 1 5.4089 -7.1670 -0.1380 40 1 7.8045 -8.2638 2.4350 41 1 1.9530 -2.4619 -2.2009 42 1 0.4749 -2.0548 -1.2961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401490819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = -92.124964 kcal Electronic energy + Delta-G solvation = -20233.521563 eV Core-core repulsion = 17213.737707 eV Total energy + Delta-G solvation = -3019.783856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30840 -37.50865 -36.00695 -33.47153 -32.65888 -31.07875 -29.44177 -27.92625 -26.89097 -25.19478 -24.29654 -22.66979 -22.18114 -20.66755 -18.89062 -16.83391 -16.40157 -16.34472 -15.79922 -15.52383 -15.15682 -14.93956 -14.23872 -14.06922 -13.72290 -13.35855 -13.14635 -13.09336 -12.87053 -12.47086 -12.31624 -11.93896 -11.83922 -11.63831 -11.40828 -11.13609 -10.95829 -10.78681 -10.77884 -10.55495 -10.43850 -10.18178 -9.92308 -9.67300 -9.02739 -8.72443 -8.06907 -7.95279 -6.04390 -4.05307 3.36384 3.38576 3.42905 3.62116 4.08907 4.40533 4.65813 4.69997 4.74711 4.82229 4.93042 4.96013 5.17454 5.25826 5.27105 5.31913 5.34645 5.37962 5.48902 5.53469 5.68238 5.70871 5.76301 5.85969 5.90228 5.94056 5.98542 6.06657 6.11778 6.28725 6.31343 6.34367 7.00040 7.18503 7.23562 7.31034 7.51805 7.86983 8.24314 8.70038 9.09389 9.59286 11.07292 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.004210 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.116634 B = 6648.466704 C = 6841.171136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.114 4.114 6 C 0.051 3.949 7 H 0.093 0.907 8 N -0.515 5.515 9 C 0.019 3.981 10 C 0.057 3.943 11 C 0.069 3.931 12 O -0.380 6.380 13 C 0.195 3.805 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.025 3.975 23 O -0.376 6.376 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 14.925 -5.690 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.026 3.974 3 H 0.118 0.882 4 C -0.187 4.187 5 C -0.152 4.152 6 C -0.058 4.058 7 H 0.111 0.889 8 N -0.239 5.239 9 C -0.129 4.129 10 C -0.071 4.071 11 C -0.009 4.009 12 O -0.300 6.300 13 C 0.120 3.880 14 C -0.549 4.549 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.053 4.053 23 O -0.293 6.293 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.920 14.659 -5.271 20.238 hybrid contribution -0.029 -0.283 0.036 0.286 sum -12.949 14.376 -5.235 20.044 Atomic orbital electron populations 1.22452 0.96634 1.02763 1.02452 1.22200 0.93338 0.96330 0.85551 0.88219 1.22207 1.02207 0.96253 0.98065 1.21665 1.00837 0.94442 0.98228 1.22385 1.01333 0.87478 0.94593 0.88939 1.62058 1.04753 1.12302 1.44786 1.22481 0.88496 1.02638 0.99269 1.22219 0.96242 0.97794 0.90840 1.22214 0.94431 0.93216 0.91067 1.87928 1.32192 1.60810 1.49036 1.20158 0.79868 0.93946 0.94006 1.21029 0.93417 1.24876 1.15552 0.91615 1.24939 0.94838 0.97078 0.97671 1.69958 0.97643 1.44360 1.42052 0.86413 0.77085 0.81083 0.81972 1.21232 1.20046 1.20059 1.23365 0.99159 0.82879 0.99906 1.87977 1.73772 1.24443 1.43151 0.91846 0.91507 0.92107 0.90795 0.90756 0.91621 0.90138 0.91055 0.91451 0.96035 0.93949 0.90091 0.94687 0.94405 0.97953 0.98078 0.92707 0.89284 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 8.65 37.16 0.32 -1.24 16 2 C 0.08 0.83 3.91 -26.68 -0.10 0.73 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.54 5.64 -26.59 -0.15 -1.69 16 5 C -0.11 -1.39 5.00 -26.55 -0.13 -1.52 16 6 C 0.05 0.69 2.31 -67.58 -0.16 0.54 16 7 H 0.09 1.45 6.57 -51.93 -0.34 1.11 16 8 N -0.51 -7.70 4.59 -234.72 -1.08 -8.78 16 9 C 0.02 0.23 8.51 60.07 0.51 0.74 16 10 C 0.06 0.86 5.27 -3.82 -0.02 0.84 16 11 C 0.07 1.32 6.13 37.16 0.23 1.55 16 12 O -0.38 -9.48 10.27 -35.23 -0.36 -9.84 16 13 C 0.19 5.51 5.69 36.00 0.20 5.71 16 14 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 15 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 18 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.03 0.30 5.12 37.20 0.19 0.49 16 23 O -0.38 -4.72 10.60 -35.23 -0.37 -5.09 16 24 H 0.06 0.56 4.97 -51.93 -0.26 0.30 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.72 4.73 -51.93 -0.25 0.48 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.73 6.06 -51.93 -0.31 0.42 16 33 H 0.02 0.22 6.72 -51.93 -0.35 -0.13 16 34 H 0.04 0.54 6.22 -51.93 -0.32 0.22 16 35 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 36 H 0.04 0.67 6.66 -51.93 -0.35 0.32 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.04 6.55 -51.93 -0.34 0.70 16 42 H 0.06 0.60 4.59 -51.93 -0.24 0.36 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -32.38 319.29 -7.76 -40.13 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.94 Total: -3.67 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.47 Total: -8.06 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.34 Total: -35.52 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.74 Total: -14.93 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.38 -7.76 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401490819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.991 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds