Wall clock time and date at job start Mon Mar 30 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47307 * 2 1 4 4 C 1.46900 * 111.00081 * 197.82914 * 3 2 1 5 5 C 1.53005 * 109.46863 * 66.04768 * 4 3 2 6 6 O 1.42902 * 109.47057 * 64.99828 * 5 4 3 7 7 C 1.42899 * 113.99516 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46738 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00421 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00062 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99960 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46923 * 60.00285 * 12 10 8 14 14 H 1.48499 * 109.46942 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46998 * 300.00174 * 12 10 8 16 16 C 1.46900 * 110.99479 * 73.87743 * 3 2 1 17 17 H 1.09001 * 109.52683 * 310.44655 * 16 3 2 18 18 C 1.53173 * 109.52503 * 70.58106 * 16 3 2 19 19 C 1.53178 * 109.03664 * 176.88213 * 18 16 3 20 20 C 1.53090 * 109.16314 * 303.01693 * 19 18 16 21 21 O 1.42902 * 109.41607 * 57.61272 * 20 19 18 22 22 C 1.42908 * 114.09248 * 298.84236 * 21 20 19 23 23 H 1.08999 * 109.47306 * 54.56035 * 1 2 3 24 24 H 1.09000 * 109.47034 * 174.56124 * 1 2 3 25 25 H 1.09001 * 109.47195 * 294.55356 * 1 2 3 26 26 H 1.09005 * 109.47062 * 239.99758 * 2 1 3 27 27 H 1.09005 * 109.47073 * 120.00300 * 2 1 3 28 28 H 1.09002 * 109.47038 * 186.04251 * 4 3 2 29 29 H 1.09002 * 109.47283 * 306.05051 * 4 3 2 30 30 H 1.09005 * 109.46849 * 184.99957 * 5 4 3 31 31 H 1.08999 * 109.46802 * 304.99569 * 5 4 3 32 32 H 1.08996 * 109.47401 * 299.99744 * 7 6 5 33 33 H 1.08999 * 109.47168 * 60.00649 * 7 6 5 34 34 H 0.96996 * 119.99750 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.54205 * 296.74737 * 18 16 3 36 36 H 1.08999 * 109.54658 * 56.92348 * 18 16 3 37 37 H 1.09002 * 109.52380 * 62.92476 * 19 18 16 38 38 H 1.09000 * 109.52242 * 183.11220 * 19 18 16 39 39 H 1.09006 * 109.47882 * 177.58844 * 20 19 18 40 40 H 1.08994 * 109.48124 * 297.62476 * 20 19 18 41 41 H 1.09005 * 109.47621 * 301.17157 * 22 21 20 42 42 H 1.09001 * 109.47709 * 181.14074 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4261 1.4461 -0.4199 5 6 3.5398 1.0198 -1.8850 6 8 2.8572 1.9656 -2.7106 7 6 2.9036 1.6592 -4.1056 8 6 2.1560 2.7161 -4.8770 9 1 1.6922 3.5397 -4.3544 10 6 2.0648 2.6324 -6.2503 11 7 2.6300 1.6299 -6.8869 12 14 1.1387 3.9429 -7.2066 13 1 1.7682 5.2667 -6.9689 14 1 1.1867 3.6245 -8.6562 15 1 -0.2754 3.9788 -6.7547 16 6 1.8361 2.0082 1.3175 17 1 0.8125 1.8486 1.6566 18 6 2.8108 1.3828 2.3200 19 6 2.6646 2.0934 3.6690 20 6 2.9109 3.5921 3.4768 21 8 1.9917 4.1045 2.5101 22 6 2.1143 3.5102 1.2162 23 1 -0.3634 0.5959 -0.8372 24 1 -0.3633 -1.0230 -0.0974 25 1 -0.3634 0.4270 0.9347 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7945 2.4660 -0.3086 29 1 4.0201 0.7753 0.2008 30 1 4.5909 0.9796 -2.1710 31 1 3.0905 0.0350 -2.0127 32 1 3.9414 1.6326 -4.4375 33 1 2.4413 0.6876 -4.2798 34 1 2.5655 1.5708 -7.8529 35 1 2.5819 0.3237 2.4390 36 1 3.8317 1.4963 1.9553 37 1 1.6578 1.9364 4.0562 38 1 3.3933 1.6919 4.3732 39 1 2.7660 4.1089 4.4256 40 1 3.9313 3.7510 3.1283 41 1 3.1244 3.6681 0.8380 42 1 1.3957 3.9680 0.5364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402709600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:36 Heat of formation + Delta-G solvation = -94.732566 kcal Electronic energy + Delta-G solvation = -20216.743082 eV Core-core repulsion = 17196.846152 eV Total energy + Delta-G solvation = -3019.896930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00666 -37.58709 -36.11140 -33.07521 -32.65164 -31.33391 -30.40852 -27.58704 -26.40198 -25.26981 -23.19494 -22.59974 -22.19279 -21.34951 -19.03637 -16.74188 -16.45006 -16.20163 -15.60588 -15.46378 -15.23156 -14.72305 -14.44312 -14.33910 -13.90384 -13.66150 -13.11856 -12.99625 -12.82741 -12.53407 -11.87403 -11.85224 -11.69340 -11.53227 -11.26670 -11.11073 -10.92444 -10.79318 -10.72815 -10.65681 -10.35916 -10.26046 -9.95839 -9.49208 -9.04498 -8.73601 -8.09507 -8.01134 -6.05592 -4.06450 3.36420 3.38566 3.43054 3.67253 4.12988 4.39856 4.62451 4.68927 4.73682 4.87258 4.88308 5.11188 5.19731 5.28871 5.30946 5.31503 5.44217 5.54284 5.60304 5.64292 5.67354 5.70647 5.75452 5.83622 5.87080 6.02038 6.05602 6.12754 6.17473 6.22726 6.32690 6.47397 7.06529 7.15419 7.27590 7.32940 7.49178 7.86050 8.22515 8.67418 9.08043 9.58276 11.06096 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.004479 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.189977 B = 6250.090944 C = 6594.848014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.512 5.512 4 C 0.054 3.946 5 C 0.066 3.934 6 O -0.379 6.379 7 C 0.195 3.805 8 C -0.510 4.510 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.901 5.901 12 Si 0.907 3.093 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.053 3.947 17 H 0.090 0.910 18 C -0.159 4.159 19 C -0.150 4.150 20 C 0.058 3.942 21 O -0.382 6.382 22 C 0.068 3.932 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -2.272 20.039 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 N -0.236 5.236 4 C -0.073 4.073 5 C -0.012 4.012 6 O -0.298 6.298 7 C 0.120 3.880 8 C -0.548 4.548 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.541 5.541 12 Si 0.734 3.266 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.056 4.056 17 H 0.108 0.892 18 C -0.198 4.198 19 C -0.188 4.188 20 C -0.019 4.019 21 O -0.300 6.300 22 C -0.008 4.008 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.373 -1.764 19.605 19.688 hybrid contribution 0.478 -0.516 -0.218 0.737 sum 0.851 -2.280 19.387 19.539 Atomic orbital electron populations 1.21751 0.94916 1.01308 1.02353 1.22159 0.96405 0.88912 1.00620 1.62058 1.19185 1.17690 1.24693 1.22250 0.88409 1.01747 0.94935 1.22296 0.95571 0.93203 0.90166 1.87946 1.74907 1.47509 1.19435 1.20162 0.95779 0.96340 0.75692 1.21027 1.33529 1.09221 0.91051 0.91565 1.24939 0.95935 0.96271 0.97363 1.69957 1.44606 1.30726 1.08779 0.86413 0.80307 0.81567 0.78292 1.20041 1.21248 1.20006 1.22367 0.99790 0.95378 0.88100 0.89220 1.22337 1.00976 1.00420 0.96096 1.22134 1.02687 0.96436 0.97541 1.22563 0.93008 0.93460 0.92880 1.87962 1.58899 1.62593 1.20524 1.22662 1.02406 0.91777 0.84006 0.91065 0.92736 0.93357 0.90261 0.95184 0.90004 0.94213 0.94426 0.94521 0.98098 0.97981 0.92713 0.91514 0.91398 0.91127 0.91207 0.89123 0.93336 0.92769 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.49 16 2 C 0.05 0.62 5.46 -3.82 -0.02 0.60 16 3 N -0.51 -7.55 4.35 -226.47 -0.98 -8.54 16 4 C 0.05 0.81 4.28 -3.82 -0.02 0.79 16 5 C 0.07 1.22 6.02 37.16 0.22 1.45 16 6 O -0.38 -9.22 10.27 -35.23 -0.36 -9.58 16 7 C 0.19 5.42 5.69 36.01 0.20 5.62 16 8 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 9 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 12 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.05 0.66 2.30 -67.58 -0.16 0.51 16 17 H 0.09 1.15 6.60 -51.93 -0.34 0.80 16 18 C -0.16 -1.65 4.62 -26.55 -0.12 -1.77 16 19 C -0.15 -1.33 6.14 -26.59 -0.16 -1.50 16 20 C 0.06 0.56 6.84 37.20 0.25 0.82 16 21 O -0.38 -4.96 10.77 -35.23 -0.38 -5.34 16 22 C 0.07 0.91 6.13 37.20 0.23 1.14 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.56 6.88 -51.93 -0.36 0.20 16 26 H 0.08 1.16 5.84 -51.93 -0.30 0.85 16 27 H 0.03 0.35 6.30 -51.93 -0.33 0.02 16 28 H 0.08 1.24 6.06 -51.93 -0.31 0.92 16 29 H 0.04 0.50 6.76 -51.93 -0.35 0.15 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.67 6.09 -51.93 -0.32 0.35 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 0.67 6.62 -51.93 -0.34 0.33 16 36 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.73 6.28 -51.93 -0.33 0.40 16 42 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -31.61 323.17 -7.85 -39.46 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.09 Total: -3.61 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 0.38 Total: -7.86 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.25 Total: -35.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.74 Total: -14.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.61 -7.85 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402709600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.276 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds