Wall clock time and date at job start Mon Mar 30 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99663 * 2 1 4 4 C 1.53006 * 112.84692 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47002 * 170.32989 * 4 3 2 6 6 C 1.52997 * 109.47127 * 50.33415 * 4 3 2 7 7 N 1.46899 * 109.47163 * 290.33225 * 4 3 2 8 8 C 1.46900 * 110.99567 * 205.00122 * 7 4 3 9 9 C 1.53007 * 109.46744 * 179.97438 * 8 7 4 10 10 O 1.42904 * 109.46922 * 64.99947 * 9 8 7 11 11 C 1.42900 * 113.99859 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47154 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00413 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99515 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47524 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47039 * 120.00471 * 16 14 12 19 19 H 1.48505 * 109.47095 * 240.00130 * 16 14 12 20 20 C 1.53782 * 113.61444 * 311.19165 * 3 2 1 21 21 C 1.53957 * 87.01469 * 89.23056 * 20 3 2 22 22 C 1.53776 * 113.61698 * 48.80420 * 3 2 1 23 23 H 1.09003 * 109.47353 * 60.00527 * 1 2 3 24 24 H 1.08998 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47283 * 299.99953 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99697 * 6 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 6 4 3 29 29 H 1.00897 * 110.99858 * 81.04858 * 7 4 3 30 30 H 1.08995 * 109.47661 * 299.99688 * 8 7 4 31 31 H 1.08995 * 109.47175 * 60.00477 * 8 7 4 32 32 H 1.09003 * 109.47113 * 184.99987 * 9 8 7 33 33 H 1.09002 * 109.47178 * 305.00345 * 9 8 7 34 34 H 1.09002 * 109.47150 * 300.00222 * 11 10 9 35 35 H 1.08995 * 109.46773 * 59.99791 * 11 10 9 36 36 H 0.96999 * 120.00251 * 179.97438 * 15 14 12 37 37 H 1.09001 * 113.61419 * 203.75174 * 20 3 2 38 38 H 1.09001 * 113.61317 * 334.65371 * 20 3 2 39 39 H 1.09001 * 113.53869 * 270.80941 * 21 20 3 40 40 H 1.09002 * 113.74254 * 139.94437 * 21 20 3 41 41 H 1.09001 * 113.61151 * 25.34541 * 22 3 2 42 42 H 1.08996 * 113.61594 * 156.25035 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5399 1.2748 0.0006 5 1 3.9235 2.2804 -0.1720 6 6 4.0317 0.3438 -1.1094 7 7 4.0192 0.7841 1.2996 8 6 5.3765 1.2721 1.5783 9 6 5.8401 0.7419 2.9366 10 8 5.9545 -0.6814 2.8786 11 6 6.3842 -1.2803 4.1028 12 6 6.4701 -2.7746 3.9279 13 1 6.2218 -3.2221 2.9768 14 6 6.8667 -3.5703 4.9817 15 7 7.1695 -3.0253 6.1397 16 14 6.9739 -5.4226 4.7647 17 1 6.5842 -5.7819 3.3775 18 1 8.3664 -5.8710 5.0191 19 1 6.0566 -6.0874 5.7249 20 6 1.4129 2.2457 -1.0603 21 6 0.3745 2.6521 0.0012 22 6 1.4129 2.2457 1.0602 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.6760 0.7080 -2.0733 27 1 5.1215 0.3223 -1.1092 28 1 3.6481 -0.6617 -0.9368 29 1 3.9813 -0.2233 1.3419 30 1 6.0553 0.9223 0.8005 31 1 5.3744 2.3619 1.5956 32 1 6.8096 1.1746 3.1839 33 1 5.1137 1.0171 3.7013 34 1 7.3650 -0.8896 4.3738 35 1 5.6694 -1.0469 4.8919 36 1 7.4481 -3.5852 6.8812 37 1 2.0808 3.0567 -1.3507 38 1 0.9833 1.7231 -1.9150 39 1 -0.5170 2.0249 0.0006 40 1 0.1426 3.7172 0.0032 41 1 0.9833 1.7232 1.9149 42 1 2.0807 3.0567 1.3506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412029147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:26 Heat of formation + Delta-G solvation = -68.422642 kcal Electronic energy + Delta-G solvation = -19904.015919 eV Core-core repulsion = 16885.259873 eV Total energy + Delta-G solvation = -3018.756046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62197 -37.23259 -35.72147 -34.81412 -32.71979 -31.08015 -27.81785 -27.43859 -26.46159 -25.59679 -24.44340 -22.32246 -21.50716 -20.90069 -19.88132 -16.52981 -16.33996 -16.09864 -15.63217 -15.45439 -15.07983 -14.55525 -14.38050 -13.97336 -13.81968 -13.54538 -13.10919 -12.88105 -12.39762 -12.30472 -12.25810 -12.05706 -11.92768 -11.58583 -11.19979 -11.06697 -10.83561 -10.76764 -10.70864 -10.67162 -10.47325 -10.07177 -9.86088 -9.37603 -9.04937 -8.78458 -8.12541 -8.06347 -6.07439 -4.08741 3.31707 3.38039 3.44799 3.71188 4.16820 4.38592 4.41979 4.58240 4.72759 4.95433 5.00665 5.11170 5.23578 5.29212 5.29977 5.38200 5.44051 5.52989 5.56896 5.61552 5.63786 5.74906 5.75858 5.83395 5.86827 5.98945 6.05770 6.13928 6.21090 6.27332 6.37097 6.42822 7.15687 7.23772 7.37660 7.48479 7.78242 7.83465 8.19648 8.62718 9.05174 9.56089 11.04212 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.004082 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.548387 B = 6857.205843 C = 7243.349978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.352 6.352 3 C 0.111 3.889 4 C 0.109 3.891 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.677 5.677 8 C 0.065 3.935 9 C 0.063 3.937 10 O -0.398 6.398 11 C 0.197 3.803 12 C -0.512 4.512 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.165 4.165 21 C -0.166 4.166 22 C -0.145 4.145 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.361 0.639 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.003 0.997 35 H 0.006 0.994 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.927 12.232 -13.650 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.270 6.270 3 C 0.071 3.929 4 C -0.002 4.002 5 H 0.102 0.898 6 C -0.237 4.237 7 N -0.310 5.310 8 C -0.064 4.064 9 C -0.015 4.015 10 O -0.318 6.318 11 C 0.123 3.877 12 C -0.551 4.551 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.203 4.203 21 C -0.203 4.203 22 C -0.183 4.183 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.182 0.818 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.084 12.390 -13.257 21.801 hybrid contribution 0.485 -1.060 -0.287 1.200 sum -11.599 11.331 -13.544 21.127 Atomic orbital electron populations 1.23017 0.82082 1.02294 0.99921 1.87962 1.19006 1.25732 1.94251 1.22535 0.92704 0.82858 0.94828 1.21401 0.91008 0.98689 0.89091 0.89782 1.22398 1.01001 1.01403 0.98935 1.60514 1.23144 1.18254 1.29046 1.21979 0.89141 0.98639 0.96648 1.22286 0.98328 0.84865 0.96041 1.87798 1.88947 1.16562 1.38488 1.20170 0.93384 0.93152 0.81025 1.21103 1.45089 0.90551 0.98330 0.91553 1.24943 0.95261 0.99462 0.94848 1.69973 1.46003 1.35680 1.02184 0.86300 0.77627 0.84313 0.78363 1.19488 1.20907 1.20842 1.23611 0.99048 0.99968 0.97709 1.23408 0.97981 1.01707 0.97202 1.23320 0.97754 0.99680 0.97527 0.93864 0.90061 0.93396 0.92707 0.92704 0.91313 0.81787 0.94790 0.90949 0.94316 0.93633 0.97894 0.97644 0.92759 0.89319 0.91128 0.89257 0.91484 0.90734 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.17 101.05 0.93 1.16 16 2 O -0.35 -4.71 9.94 -35.23 -0.35 -5.06 16 3 C 0.11 1.31 1.11 -89.81 -0.10 1.21 16 4 C 0.11 1.36 2.21 -67.71 -0.15 1.21 16 5 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 6 C -0.18 -2.23 8.93 37.16 0.33 -1.90 16 7 N -0.68 -10.42 6.04 -106.72 -0.64 -11.06 16 8 C 0.07 1.00 5.90 -3.82 -0.02 0.98 16 9 C 0.06 1.19 6.28 37.16 0.23 1.43 16 10 O -0.40 -9.71 9.85 -35.23 -0.35 -10.06 16 11 C 0.20 5.52 5.69 36.00 0.20 5.72 16 12 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 13 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 16 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.17 -1.54 6.88 -25.83 -0.18 -1.72 16 21 C -0.17 -1.47 7.30 -25.83 -0.19 -1.66 16 22 C -0.15 -1.60 6.68 -25.92 -0.17 -1.77 16 23 H 0.04 0.37 5.86 -51.93 -0.30 0.07 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.46 5.86 -51.93 -0.30 0.16 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 28 H 0.07 0.97 7.63 -51.93 -0.40 0.58 16 29 H 0.36 6.52 8.03 -39.29 -0.32 6.21 16 30 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 31 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 0.74 7.99 -51.93 -0.41 0.32 16 38 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 39 H 0.09 0.73 4.83 -51.93 -0.25 0.48 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 42 H 0.09 0.98 8.10 -51.93 -0.42 0.55 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -31.41 331.95 -7.44 -38.85 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.27 Total: 1.22 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 0.46 Total: -9.47 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.09 Total: -37.63 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.70 Total: -15.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.41 -7.44 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412029147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.576 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds