Wall clock time and date at job start Mon Mar 30 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99663 * 2 1 4 4 C 1.53006 * 112.84692 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47002 * 170.32989 * 4 3 2 6 6 C 1.52997 * 109.47127 * 50.33415 * 4 3 2 7 7 N 1.46899 * 109.47163 * 290.33225 * 4 3 2 8 8 C 1.46900 * 110.99567 * 205.00122 * 7 4 3 9 9 C 1.53007 * 109.46744 * 179.97438 * 8 7 4 10 10 O 1.42904 * 109.46922 * 64.99947 * 9 8 7 11 11 C 1.42900 * 113.99859 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47154 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00413 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99515 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47524 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47039 * 120.00471 * 16 14 12 19 19 H 1.48505 * 109.47095 * 240.00130 * 16 14 12 20 20 C 1.53782 * 113.61444 * 311.19165 * 3 2 1 21 21 C 1.53957 * 87.01469 * 89.23056 * 20 3 2 22 22 C 1.53776 * 113.61698 * 48.80420 * 3 2 1 23 23 H 1.09003 * 109.47353 * 60.00527 * 1 2 3 24 24 H 1.08998 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47283 * 299.99953 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99697 * 6 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 6 4 3 29 29 H 1.00897 * 110.99858 * 81.04858 * 7 4 3 30 30 H 1.08995 * 109.47661 * 299.99688 * 8 7 4 31 31 H 1.08995 * 109.47175 * 60.00477 * 8 7 4 32 32 H 1.09003 * 109.47113 * 184.99987 * 9 8 7 33 33 H 1.09002 * 109.47178 * 305.00345 * 9 8 7 34 34 H 1.09002 * 109.47150 * 300.00222 * 11 10 9 35 35 H 1.08995 * 109.46773 * 59.99791 * 11 10 9 36 36 H 0.96999 * 120.00251 * 179.97438 * 15 14 12 37 37 H 1.09001 * 113.61419 * 203.75174 * 20 3 2 38 38 H 1.09001 * 113.61317 * 334.65371 * 20 3 2 39 39 H 1.09001 * 113.53869 * 270.80941 * 21 20 3 40 40 H 1.09002 * 113.74254 * 139.94437 * 21 20 3 41 41 H 1.09001 * 113.61151 * 25.34541 * 22 3 2 42 42 H 1.08996 * 113.61594 * 156.25035 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5399 1.2748 0.0006 5 1 3.9235 2.2804 -0.1720 6 6 4.0317 0.3438 -1.1094 7 7 4.0192 0.7841 1.2996 8 6 5.3765 1.2721 1.5783 9 6 5.8401 0.7419 2.9366 10 8 5.9545 -0.6814 2.8786 11 6 6.3842 -1.2803 4.1028 12 6 6.4701 -2.7746 3.9279 13 1 6.2218 -3.2221 2.9768 14 6 6.8667 -3.5703 4.9817 15 7 7.1695 -3.0253 6.1397 16 14 6.9739 -5.4226 4.7647 17 1 6.5842 -5.7819 3.3775 18 1 8.3664 -5.8710 5.0191 19 1 6.0566 -6.0874 5.7249 20 6 1.4129 2.2457 -1.0603 21 6 0.3745 2.6521 0.0012 22 6 1.4129 2.2457 1.0602 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.6760 0.7080 -2.0733 27 1 5.1215 0.3223 -1.1092 28 1 3.6481 -0.6617 -0.9368 29 1 3.9813 -0.2233 1.3419 30 1 6.0553 0.9223 0.8005 31 1 5.3744 2.3619 1.5956 32 1 6.8096 1.1746 3.1839 33 1 5.1137 1.0171 3.7013 34 1 7.3650 -0.8896 4.3738 35 1 5.6694 -1.0469 4.8919 36 1 7.4481 -3.5852 6.8812 37 1 2.0808 3.0567 -1.3507 38 1 0.9833 1.7231 -1.9150 39 1 -0.5170 2.0249 0.0006 40 1 0.1426 3.7172 0.0032 41 1 0.9833 1.7232 1.9149 42 1 2.0807 3.0567 1.3506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412029147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:26 Heat of formation + Delta-G solvation = -90.393031 kcal Electronic energy + Delta-G solvation = -19904.968627 eV Core-core repulsion = 16885.259873 eV Total energy + Delta-G solvation = -3019.708754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47308 -38.88367 -37.09709 -35.71145 -34.90965 -32.37688 -29.62155 -28.31009 -28.08465 -26.45548 -25.32853 -24.52345 -22.86239 -21.87272 -20.73161 -18.65833 -17.49630 -17.23851 -17.16703 -16.84944 -16.36730 -15.99058 -15.73855 -15.46573 -15.03998 -14.72280 -14.34565 -13.94131 -13.81538 -13.52235 -13.24150 -13.13299 -13.09512 -12.91758 -12.80503 -12.68906 -12.47865 -12.33235 -12.05793 -11.91323 -11.62004 -11.31404 -11.26376 -10.88756 -10.81224 -10.24628 -10.21284 -9.24091 -8.32593 -6.44880 1.39354 1.40974 1.55707 2.34572 2.87791 3.01230 3.11256 3.24574 3.62881 3.75937 3.88262 4.05387 4.15422 4.28038 4.39484 4.45912 4.46551 4.52831 4.56388 4.59372 4.76674 4.80916 4.81030 4.86207 4.86802 4.89477 4.99657 5.05250 5.09843 5.11343 5.18204 5.19892 5.32373 5.45863 5.54722 5.95726 6.17192 6.41671 6.47048 6.53767 6.82289 7.27203 8.80101 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.004082 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.548387 B = 6857.205843 C = 7243.349978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.382 6.382 3 C 0.099 3.901 4 C 0.107 3.893 5 H 0.105 0.895 6 C -0.172 4.172 7 N -0.685 5.685 8 C 0.075 3.925 9 C 0.054 3.946 10 O -0.409 6.409 11 C 0.211 3.789 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.271 1.271 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.150 4.150 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.342 0.658 30 H 0.033 0.967 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.041 0.959 34 H -0.014 1.014 35 H -0.017 1.017 36 H 0.271 0.729 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 12.646 -15.024 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.003 4.003 5 H 0.123 0.877 6 C -0.230 4.230 7 N -0.316 5.316 8 C -0.054 4.054 9 C -0.023 4.023 10 O -0.329 6.329 11 C 0.136 3.864 12 C -0.585 4.585 13 H 0.079 0.921 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.192 4.192 21 C -0.193 4.193 22 C -0.187 4.187 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.160 0.840 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.003 0.997 35 H 0.001 0.999 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.663 12.845 -14.643 23.233 hybrid contribution 0.644 -1.105 0.158 1.288 sum -12.020 11.740 -14.486 22.184 Atomic orbital electron populations 1.23156 0.80728 1.02943 1.00845 1.87918 1.20675 1.26983 1.94535 1.22695 0.92095 0.82812 0.96533 1.21571 0.91883 0.99367 0.87472 0.87725 1.22313 1.00489 1.00249 0.99993 1.60563 1.22992 1.16797 1.31244 1.21960 0.89154 1.00247 0.94021 1.22617 0.98965 0.82064 0.98630 1.87766 1.88735 1.19796 1.36601 1.19784 0.91771 0.93008 0.81793 1.21414 1.46625 0.91769 0.98677 0.92136 1.25957 0.94011 1.05070 0.94140 1.70075 1.45891 1.37999 1.03046 0.85135 0.78330 0.77248 0.78671 1.18926 1.19526 1.19631 1.23578 0.98988 0.99464 0.97208 1.23366 0.97561 1.02721 0.95602 1.23335 0.98666 0.99484 0.97252 0.92008 0.89725 0.93266 0.90742 0.93251 0.93616 0.84008 0.94888 0.87503 0.93360 0.94101 0.99668 0.99892 0.92033 0.87813 0.90641 0.88707 0.89996 0.92742 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.17 113.37 1.04 1.41 16 2 O -0.38 -10.14 9.94 -148.98 -1.48 -11.62 16 3 C 0.10 2.20 1.11 -10.27 -0.01 2.19 16 4 C 0.11 2.54 2.21 44.92 0.10 2.64 16 5 H 0.10 2.04 7.64 -2.39 -0.02 2.02 16 6 C -0.17 -4.14 8.93 71.98 0.64 -3.50 16 7 N -0.69 -20.96 6.04 -491.56 -2.97 -23.92 16 8 C 0.08 2.23 5.90 86.31 0.51 2.74 16 9 C 0.05 2.09 6.28 71.98 0.45 2.54 16 10 O -0.41 -20.56 9.85 -148.98 -1.47 -22.02 16 11 C 0.21 12.29 5.69 71.24 0.41 12.70 16 12 C -0.55 -33.51 9.43 25.60 0.24 -33.27 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.01 0.39 5.46 84.66 0.46 0.85 16 15 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 16 Si 0.98 45.35 29.54 68.60 2.03 47.38 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C -0.15 -2.45 6.88 31.18 0.21 -2.23 16 21 C -0.16 -2.38 7.30 31.18 0.23 -2.15 16 22 C -0.15 -3.12 6.68 31.12 0.21 -2.92 16 23 H 0.06 0.94 5.86 -2.39 -0.01 0.93 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 0.92 5.86 -2.39 -0.01 0.91 16 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 28 H 0.04 1.31 7.63 -2.39 -0.02 1.29 16 29 H 0.34 12.72 8.03 -89.70 -0.72 12.00 16 30 H 0.03 0.99 7.44 -2.39 -0.02 0.98 16 31 H 0.11 2.46 8.05 -2.39 -0.02 2.44 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.10 1.34 7.99 -2.39 -0.02 1.32 16 38 H 0.07 1.15 7.48 -2.39 -0.02 1.13 16 39 H 0.09 1.34 4.83 -2.39 -0.01 1.33 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.34 7.48 -2.39 -0.02 1.32 16 42 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -68.46 331.95 1.15 -67.30 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.27 Total: 18.63 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.49 Total: -18.99 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.68 Total: -80.68 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -2.95 Total: -33.64 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.46 1.15 -67.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412029147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.090 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds